Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:33:21 (6110): wrapper (7.7.26015): starting
10:33:21 (6110): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 10:33:21] Arguments: --nthreads 12
[2025-07-27 10:33:21] Threads: 12
[2025-07-27 10:33:21] Checking for CVMFS
[2025-07-27 10:33:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 10:33:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 10:33:22] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 10:33:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 10:33:22] 2.11.2.0 2913 112127 96044 148815 1 59 15410627 20275201 1 130560 0 38879976 99.971 9816412 10823 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 10:33:22] CVMFS is ok
[2025-07-27 10:33:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 10:33:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 10:33:22] Further information can be found at the LHC@home message board.
[2025-07-27 10:33:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 10:33:22] Checking for apptainer binary...
[2025-07-27 10:33:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 10:33:22] Running /usr/bin/apptainer --version
[2025-07-27 10:33:22] apptainer version 1.3.2-1.el7
[2025-07-27 10:33:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 10:33:23] c-205-6.aglt2.org
[2025-07-27 10:33:23] apptainer works
[2025-07-27 10:33:23] Set ATHENA_PROC_NUMBER=12
[2025-07-27 10:33:23] Set ATHENA_CORE_NUMBER=12
[2025-07-27 10:33:23] Starting ATLAS job with PandaID=6746209413
[2025-07-27 10:33:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 12:03:49]  *** The last 200 lines of the pilot log: ***
[2025-07-27 12:03:49]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 12:03:49]  replicas=None
[2025-07-27 12:03:49]  scope=mc23_13p6TeV
[2025-07-27 12:03:49]  status=None
[2025-07-27 12:03:49]  status_code=0
[2025-07-27 12:03:49]  storage_token=
[2025-07-27 12:03:49]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6746209413/log.45759518._000010.job.log.tgz.1
[2025-07-27 12:03:49]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/06/21/log.45759518._000010.job.log.tgz.1
[2025-07-27 12:03:49]  workdir=None
[2025-07-27 12:03:49] ]
[2025-07-27 12:03:49] 2025-07-27 16:03:08,097 | INFO     | transferring file log.45759518._000010.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6746209413/log.45759518._000010.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 12:03:49] 2025-07-27 16:03:08,097 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6746209413/log.45759518._000010.job.log.tgz.1 /tmp/boinchome/slots/0/log.45759518._000010.job
[2025-07-27 12:03:49] 2025-07-27 16:03:08,119 | INFO     | adding to output.list: log.45759518._000010.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/06/21/log.45759518._000010.job.log.tg
[2025-07-27 12:03:49] 2025-07-27 16:03:08,120 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 12:03:49] 2025-07-27 16:03:08,120 | INFO     | summary of transferred files:
[2025-07-27 12:03:49] 2025-07-27 16:03:08,121 | INFO     |  -- lfn=log.45759518._000010.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 12:03:49] 2025-07-27 16:03:08,121 | INFO     | stage-out finished correctly
[2025-07-27 12:03:49] 2025-07-27 16:03:09,118 | INFO     | PID=9728 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-07-27 12:03:49] 2025-07-27 16:03:09,626 | WARNING  | process 16255 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 12:03:49] 2025-07-27 16:03:09,626 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6746209413/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 12:03:49] 2025-07-27 16:03:09,711 | INFO     | number of running child processes to parent process 16255: 1
[2025-07-27 12:03:49] 2025-07-27 16:03:09,711 | INFO     | maximum number of monitored processes: 6
[2025-07-27 12:03:49] 2025-07-27 16:03:10,670 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 12:03:49] 2025-07-27 16:03:10,758 | INFO     | job 6746209413 has state=finished
[2025-07-27 12:03:49] 2025-07-27 16:03:10,758 | INFO     | preparing for final server update for job 6746209413 in state='finished'
[2025-07-27 12:03:49] 2025-07-27 16:03:10,758 | INFO     | this job has now completed (state=finished)
[2025-07-27 12:03:49] 2025-07-27 16:03:10,759 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 12:03:49] 2025-07-27 16:03:10,759 | INFO     | log transfer has been attempted: DONE
[2025-07-27 12:03:49] 2025-07-27 16:03:10,759 | INFO     | job 6746209413 has finished - writing final server update
[2025-07-27 12:03:49] 2025-07-27 16:03:10,759 | INFO     | total number of processed events: 400 (read)
[2025-07-27 12:03:49] 2025-07-27 16:03:10,760 | INFO     | executing command: lscpu
[2025-07-27 12:03:49] 2025-07-27 16:03:10,786 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 12:03:49] 2025-07-27 16:03:12,217 | INFO     | monitor loop #401: job 0:6746209413 is in state 'finished'
[2025-07-27 12:03:49] 2025-07-27 16:03:12,217 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 12:03:49] 2025-07-27 16:03:14,720 | INFO     | monitor loop #402: job 0:6746209413 is in state 'finished'
[2025-07-27 12:03:49] 2025-07-27 16:03:14,720 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 12:03:49] 2025-07-27 16:03:16,420 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-27 12:03:49] 2025-07-27 16:03:16,424 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-07-27 12:03:49] 2025-07-27 16:03:16,426 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6746209413/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 12:03:49] 2025-07-27 16:03:16,427 | INFO     | extracted standard info from prmon json
[2025-07-27 12:03:49] 2025-07-27 16:03:16,427 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 12:03:49] 2025-07-27 16:03:16,428 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 12:03:49] 2025-07-27 16:03:16,428 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 12:03:49] 2025-07-27 16:03:16,428 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 12:03:49] 2025-07-27 16:03:16,430 | INFO     | fitting pss+swap vs Time
[2025-07-27 12:03:49] 2025-07-27 16:03:16,430 | INFO     | sum of square deviations: 164765880.0
[2025-07-27 12:03:49] 2025-07-27 16:03:16,431 | INFO     | sum of deviations: -12683699988.000002
[2025-07-27 12:03:49] 2025-07-27 16:03:16,431 | INFO     | mean x: 1753629592.0
[2025-07-27 12:03:49] 2025-07-27 16:03:16,431 | INFO     | mean y: 2810932.75308642
[2025-07-27 12:03:49] 2025-07-27 16:03:16,431 | INFO     | -- intersect: 134997456881.3369
[2025-07-27 12:03:49] 2025-07-27 16:03:16,431 | INFO     | intersect: 134997456881.3369
[2025-07-27 12:03:49] 2025-07-27 16:03:16,431 | INFO     | chi2: 0.06269678904389972
[2025-07-27 12:03:49] 2025-07-27 16:03:16,432 | INFO     | -- intersect: 134997456881.3369
[2025-07-27 12:03:49] 2025-07-27 16:03:16,432 | INFO     | current memory leak: -76.98 B/s (using 81 data points, chi2=0.06)
[2025-07-27 12:03:49] 2025-07-27 16:03:16,432 | INFO     | could have reported an average CPU frequency of 2041 MHz (6 samples)
[2025-07-27 12:03:49] 2025-07-27 16:03:16,432 | INFO     | ..............................
[2025-07-27 12:03:49] 2025-07-27 16:03:16,432 | INFO     | . Timing measurements:
[2025-07-27 12:03:49] 2025-07-27 16:03:16,432 | INFO     | . get job = 0 s
[2025-07-27 12:03:49] 2025-07-27 16:03:16,432 | INFO     | . initial setup = 2 s
[2025-07-27 12:03:49] 2025-07-27 16:03:16,433 | INFO     | . payload setup = 9 s
[2025-07-27 12:03:49] 2025-07-27 16:03:16,433 | INFO     | . stage-in = 0 s
[2025-07-27 12:03:49] 2025-07-27 16:03:16,433 | INFO     | . payload execution = 5340 s
[2025-07-27 12:03:49] 2025-07-27 16:03:16,433 | INFO     | . stage-out = 0 s
[2025-07-27 12:03:49] 2025-07-27 16:03:16,433 | INFO     | . log creation = 0 s
[2025-07-27 12:03:49] 2025-07-27 16:03:16,433 | INFO     | ..............................
[2025-07-27 12:03:49] 2025-07-27 16:03:16,517 | INFO     | 
[2025-07-27 12:03:49] 2025-07-27 16:03:16,517 | INFO     | job summary report
[2025-07-27 12:03:49] 2025-07-27 16:03:16,517 | INFO     | --------------------------------------------------
[2025-07-27 12:03:49] 2025-07-27 16:03:16,517 | INFO     | PanDA job id: 6746209413
[2025-07-27 12:03:49] 2025-07-27 16:03:16,518 | INFO     | task id: 45759518
[2025-07-27 12:03:49] 2025-07-27 16:03:16,518 | INFO     | errors: (none)
[2025-07-27 12:03:49] 2025-07-27 16:03:16,518 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 12:03:49] 2025-07-27 16:03:16,518 | INFO     | pilot state: finished 
[2025-07-27 12:03:49] 2025-07-27 16:03:16,518 | INFO     | transexitcode: 0
[2025-07-27 12:03:49] 2025-07-27 16:03:16,518 | INFO     | exeerrorcode: 0
[2025-07-27 12:03:49] 2025-07-27 16:03:16,519 | INFO     | exeerrordiag: 
[2025-07-27 12:03:49] 2025-07-27 16:03:16,519 | INFO     | exitcode: 0
[2025-07-27 12:03:49] 2025-07-27 16:03:16,519 | INFO     | exitmsg: OK
[2025-07-27 12:03:49] 2025-07-27 16:03:16,519 | INFO     | cpuconsumptiontime: 59161 s
[2025-07-27 12:03:49] 2025-07-27 16:03:16,519 | INFO     | nevents: 400
[2025-07-27 12:03:49] 2025-07-27 16:03:16,519 | INFO     | neventsw: 0
[2025-07-27 12:03:49] 2025-07-27 16:03:16,520 | INFO     | pid: 16255
[2025-07-27 12:03:49] 2025-07-27 16:03:16,520 | INFO     | pgrp: 16255
[2025-07-27 12:03:49] 2025-07-27 16:03:16,520 | INFO     | corecount: 12
[2025-07-27 12:03:49] 2025-07-27 16:03:16,520 | INFO     | event service: False
[2025-07-27 12:03:49] 2025-07-27 16:03:16,520 | INFO     | sizes: {0: 2397289, 1: 2397488, 5: 2397750, 11: 2397806, 5353: 2424230, 5354: 2424229, 5355: 2433411, 5358: 2433467, 5364: 2433661}
[2025-07-27 12:03:49] 2025-07-27 16:03:16,520 | INFO     | --------------------------------------------------
[2025-07-27 12:03:49] 2025-07-27 16:03:16,521 | INFO     | 
[2025-07-27 12:03:49] 2025-07-27 16:03:16,521 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 12:03:49] 2025-07-27 16:03:16,546 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 12:03:49] 2025-07-27 16:03:16,546 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 12:03:49] 2025-07-27 16:03:16,546 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 12:03:49] 2025-07-27 16:03:16,546 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 12:03:49] 2025-07-27 16:03:16,546 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 12:03:49] 2025-07-27 16:03:16,547 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 12:03:49] 2025-07-27 16:03:16,547 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 12:03:49] 2025-07-27 16:03:16,547 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 12:03:49] 2025-07-27 16:03:16,547 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 12:03:49] 2025-07-27 16:03:16,547 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 12:03:49] 2025-07-27 16:03:16,547 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 12:03:49] 2025-07-27 16:03:16,548 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 12:03:49] 2025-07-27 16:03:16,548 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 12:03:49] 2025-07-27 16:03:16,548 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 12:03:49] 2025-07-27 16:03:16,548 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 12:03:49] 2025-07-27 16:03:16,548 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 12:03:49] 2025-07-27 16:03:16,549 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 12:03:49] 2025-07-27 16:03:16,549 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 12:03:49] 2025-07-27 16:03:16,549 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 12:03:49] 2025-07-27 16:03:16,549 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 12:03:49] 2025-07-27 16:03:16,549 | INFO     | job 6746209413 has completed (purged errors)
[2025-07-27 12:03:49] 2025-07-27 16:03:16,549 | INFO     | overall cleanup function is called
[2025-07-27 12:03:49] 2025-07-27 16:03:17,557 | INFO     | --- collectZombieJob: --- 10, [16255]
[2025-07-27 12:03:49] 2025-07-27 16:03:17,557 | INFO     | zombie collector waiting for pid 16255
[2025-07-27 12:03:49] 2025-07-27 16:03:17,565 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 12:03:49] 2025-07-27 16:03:17,565 | INFO     | collected zombie processes
[2025-07-27 12:03:49] 2025-07-27 16:03:17,565 | INFO     | will attempt to kill all subprocesses of pid=16255
[2025-07-27 12:03:49] 2025-07-27 16:03:17,656 | INFO     | process IDs to be killed: [16255] (in reverse order)
[2025-07-27 12:03:49] 2025-07-27 16:03:17,707 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 12:03:49] 2025-07-27 16:03:17,707 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 12:03:49] 2025-07-27 16:03:17,711 | INFO     | did not find any defunct processes belonging to 16255
[2025-07-27 12:03:49] 2025-07-27 16:03:17,714 | INFO     | did not find any defunct processes belonging to 16255
[2025-07-27 12:03:49] 2025-07-27 16:03:17,714 | INFO     | ready for new job
[2025-07-27 12:03:49] 2025-07-27 16:03:17,714 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 12:03:49] 2025-07-27 16:03:17,716 | INFO     | ***************************************
[2025-07-27 12:03:49] 2025-07-27 16:03:17,716 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 12:03:49] 2025-07-27 16:03:17,716 | INFO     | ***************************************
[2025-07-27 12:03:49] 2025-07-27 16:03:17,716 | INFO     | 
[2025-07-27 12:03:49] 2025-07-27 16:03:17,717 | INFO     | architecture information:
[2025-07-27 12:03:49] 2025-07-27 16:03:17,718 | INFO     | executing command: cat /etc/os-release
[2025-07-27 12:03:49] 2025-07-27 16:03:17,732 | INFO     | cat /etc/os-release:
[2025-07-27 12:03:49] NAME="CentOS Linux"
[2025-07-27 12:03:49] VERSION="7 (Core)"
[2025-07-27 12:03:49] ID="centos"
[2025-07-27 12:03:49] ID_LIKE="rhel fedora"
[2025-07-27 12:03:49] VERSION_ID="7"
[2025-07-27 12:03:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 12:03:49] ANSI_COLOR="0;31"
[2025-07-27 12:03:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 12:03:49] HOME_URL="https://www.centos.org/"
[2025-07-27 12:03:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 12:03:49] 
[2025-07-27 12:03:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 12:03:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 12:03:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 12:03:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 12:03:49] 
[2025-07-27 12:03:49] 2025-07-27 16:03:17,732 | INFO     | ***************************************
[2025-07-27 12:03:49] 2025-07-27 16:03:18,233 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 12:03:49] 2025-07-27 16:03:18,252 | INFO     | sufficient remaining disk space (29356982272 B)
[2025-07-27 12:03:49] 2025-07-27 16:03:18,253 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 12:03:49] 2025-07-27 16:03:18,253 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 12:03:49] 2025-07-27 16:03:18,253 | INFO     | update_server=False
[2025-07-27 12:03:49] 2025-07-27 16:03:18,253 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 12:03:49] 2025-07-27 16:03:18,254 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 12:03:49] 2025-07-27 16:03:18,254 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 12:03:49] 2025-07-27 16:03:18,255 | INFO     | aborting loop
[2025-07-27 12:03:49] 2025-07-27 16:03:18,731 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 12:03:49] 2025-07-27 16:03:18,741 | INFO     | all data control threads have been joined
[2025-07-27 12:03:49] 2025-07-27 16:03:18,916 | INFO     | all payload control threads have been joined
[2025-07-27 12:03:49] 2025-07-27 16:03:19,259 | INFO     | [job] retrieve thread has finished
[2025-07-27 12:03:49] 2025-07-27 16:03:19,260 | INFO     | [job] queue monitor thread has finished
[2025-07-27 12:03:49] 2025-07-27 16:03:19,260 | INFO     | [job] job monitor thread has finished
[2025-07-27 12:03:49] 2025-07-27 16:03:19,372 | INFO     | [job] validate thread has finished
[2025-07-27 12:03:49] 2025-07-27 16:03:19,419 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 12:03:49] 2025-07-27 16:03:19,659 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 12:03:49] 2025-07-27 16:03:19,746 | INFO     | [data] control thread has finished
[2025-07-27 12:03:49] 2025-07-27 16:03:19,792 | INFO     | all job control threads have been joined
[2025-07-27 12:03:49] 2025-07-27 16:03:19,918 | INFO     | [payload] control thread has finished
[2025-07-27 12:03:49] 2025-07-27 16:03:19,964 | INFO     | [data] copytool_in thread has finished
[2025-07-27 12:03:49] 2025-07-27 16:03:19,969 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 12:03:49] 2025-07-27 16:03:20,315 | INFO     | [payload] validate_post thread has finished
[2025-07-27 12:03:49] 2025-07-27 16:03:20,505 | INFO     | [payload] failed_post thread has finished
[2025-07-27 12:03:49] 2025-07-27 16:03:20,736 | INFO     | [data] copytool_out thread has finished
[2025-07-27 12:03:49] 2025-07-27 16:03:20,798 | INFO     | [job] control thread has finished
[2025-07-27 12:03:49] 2025-07-27 16:03:21,266 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 12:03:49] 2025-07-27 16:03:25,272 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 12:03:49] 2025-07-27 16:03:28,551 | INFO     | job.realtimelogging is not enabled
[2025-07-27 12:03:49] 2025-07-27 16:03:29,553 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 12:03:49] 2025-07-27 16:03:30,732 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139889519535936)>', '<ExcThread(monitor, started 139888955483904)>']
[2025-07-27 12:03:49] 2025-07-27 16:03:34,258 [wrapper] supervise_pilot (15 min periods counter: 7)
[2025-07-27 12:03:49] 2025-07-27 16:03:35,758 | INFO     | all workflow threads have been joined
[2025-07-27 12:03:49] 2025-07-27 16:03:35,763 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 12:03:49] 2025-07-27 16:03:35,763 | INFO     | traces error code: 0
[2025-07-27 12:03:49] 2025-07-27 16:03:35,764 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 12:03:49] 2025-07-27 16:03:49,337 | INFO     | PID=9728 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-07-27 12:03:49] 2025-07-27 16:03:49,338 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 12:03:49] 2025-07-27 16:03:49,338 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 12:03:49] 2025-07-27 16:03:49,339 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 12:03:49] 2025-07-27 16:03:49,339 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 12:03:49] 2025-07-27 16:03:49,339 | INFO     | [monitor] control thread has ended
[2025-07-27 12:03:49] 2025-07-27 16:03:49,446 [wrapper] ==== pilot stdout END ====
[2025-07-27 12:03:49] 2025-07-27 16:03:49,450 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 12:03:49] 2025-07-27 16:03:49,454 [wrapper] pilotpid: 9728
[2025-07-27 12:03:49] 2025-07-27 16:03:49,458 [wrapper] Pilot exit status: 0
[2025-07-27 12:03:49] 2025-07-27 16:03:49,473 [wrapper] pandaids: 6746209413
[2025-07-27 12:03:49] 2025-07-27 16:03:49,514 [wrapper] cleanup supervisor_pilot  7805 9729
[2025-07-27 12:03:49] 2025-07-27 16:03:49,518 [wrapper] Test setup, not cleaning
[2025-07-27 12:03:49] 2025-07-27 16:03:49,522 [wrapper] apfmon messages muted
[2025-07-27 12:03:49] 2025-07-27 16:03:49,525 [wrapper] ==== wrapper stdout END ====
[2025-07-27 12:03:49] 2025-07-27 16:03:49,529 [wrapper] ==== wrapper stderr END ====
[2025-07-27 12:03:49]  *** Error codes and diagnostics ***
[2025-07-27 12:03:49]     "exeErrorCode": 0,
[2025-07-27 12:03:49]     "exeErrorDiag": "",
[2025-07-27 12:03:49]     "pilotErrorCode": 0,
[2025-07-27 12:03:49]     "pilotErrorDiag": "",
[2025-07-27 12:03:49]  *** Listing of results directory ***
[2025-07-27 12:03:49] total 414268
[2025-07-27 12:03:49] -rw-r--r-- 1 boincer umatlas    530466 Jul 27 01:42 pilot3.tar.gz
[2025-07-27 12:03:49] -rw-r--r-- 1 boincer umatlas      5112 Jul 27 01:59 queuedata.json
[2025-07-27 12:03:49] -rwx------ 1 boincer umatlas     36292 Jul 27 01:59 runpilot2-wrapper.sh
[2025-07-27 12:03:49] -rw-r--r-- 1 boincer umatlas       100 Jul 27 10:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 12:03:49] -rwxr-xr-x 1 boincer umatlas      7986 Jul 27 10:33 run_atlas
[2025-07-27 12:03:49] -rw-r--r-- 1 boincer umatlas       105 Jul 27 10:33 job.xml
[2025-07-27 12:03:49] -rw-r--r-- 2 boincer umatlas 241685567 Jul 27 10:33 EVNT.45759511._000001.pool.root.1
[2025-07-27 12:03:49] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 10:33 start_atlas.sh
[2025-07-27 12:03:49] drwxrwx--x 2 boincer umatlas      4096 Jul 27 10:33 shared
[2025-07-27 12:03:49] -rw-r--r-- 2 boincer umatlas    542878 Jul 27 10:33 input.tar.gz
[2025-07-27 12:03:49] -rw-r--r-- 1 boincer umatlas         0 Jul 27 10:33 boinc_lockfile
[2025-07-27 12:03:49] -rw-r--r-- 1 boincer umatlas      2554 Jul 27 10:33 pandaJob.out
[2025-07-27 12:03:49] -rw------- 1 boincer umatlas    980109 Jul 27 10:33 agis_schedconf.cvmfs.json
[2025-07-27 12:03:49] -rw------- 1 boincer umatlas   1593052 Jul 27 10:33 agis_ddmendpoints.agis.ALL.json
[2025-07-27 12:03:49] drwx------ 4 boincer umatlas      4096 Jul 27 10:33 pilot3
[2025-07-27 12:03:49] -rw-r--r-- 1 boincer umatlas      5867 Jul 27 12:00 init_data.xml
[2025-07-27 12:03:49] -rw------- 1 boincer umatlas 176906459 Jul 27 12:02 HITS.45759518._000010.pool.root.1
[2025-07-27 12:03:49] -rw-r--r-- 1 boincer umatlas       529 Jul 27 12:02 boinc_task_state.xml
[2025-07-27 12:03:49] -rw------- 1 boincer umatlas      1047 Jul 27 12:03 memory_monitor_summary.json
[2025-07-27 12:03:49] -rw------- 1 boincer umatlas    368183 Jul 27 12:03 log.45759518._000010.job.log.tgz.1
[2025-07-27 12:03:49] -rw------- 1 boincer umatlas      7841 Jul 27 12:03 heartbeat.json
[2025-07-27 12:03:49] -rw-r--r-- 1 boincer umatlas      8192 Jul 27 12:03 boinc_mmap_file
[2025-07-27 12:03:49] -rw-r--r-- 1 boincer umatlas        27 Jul 27 12:03 wrapper_checkpoint.txt
[2025-07-27 12:03:49] -rw------- 1 boincer umatlas        95 Jul 27 12:03 pilot_heartbeat.json
[2025-07-27 12:03:49] -rw------- 1 boincer umatlas       744 Jul 27 12:03 pilotlog.txt
[2025-07-27 12:03:49] -rw------- 1 boincer umatlas    506204 Jul 27 12:03 log.45759518._000010.job.log.1
[2025-07-27 12:03:49] -rw------- 1 boincer umatlas       357 Jul 27 12:03 output.list
[2025-07-27 12:03:49] -rw-r--r-- 1 boincer umatlas       620 Jul 27 12:03 runtime_log
[2025-07-27 12:03:49] -rw------- 1 boincer umatlas    890880 Jul 27 12:03 result.tar.gz
[2025-07-27 12:03:49] -rw-r--r-- 1 boincer umatlas      8657 Jul 27 12:03 runtime_log.err
[2025-07-27 12:03:49] -rw------- 1 boincer umatlas       658 Jul 27 12:03 ar7NDm7a9z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm7RULDmd9pNBn.diag
[2025-07-27 12:03:49] -rw-r--r-- 1 boincer umatlas     21998 Jul 27 12:03 stderr.txt
[2025-07-27 12:03:49] HITS file was successfully produced:
[2025-07-27 12:03:49] -rw------- 1 boincer umatlas 176906459 Jul 27 12:02 shared/HITS.pool.root.1
[2025-07-27 12:03:49]  *** Contents of shared directory: ***
[2025-07-27 12:03:49] total 410208
[2025-07-27 12:03:49] -rw-r--r-- 2 boincer umatlas 241685567 Jul 27 10:33 ATLAS.root_0
[2025-07-27 12:03:49] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 10:33 start_atlas.sh
[2025-07-27 12:03:49] -rw-r--r-- 2 boincer umatlas    542878 Jul 27 10:33 input.tar.gz
[2025-07-27 12:03:49] -rw------- 1 boincer umatlas 176906459 Jul 27 12:02 HITS.pool.root.1
[2025-07-27 12:03:49] -rw------- 1 boincer umatlas    890880 Jul 27 12:03 result.tar.gz
12:03:50 (6110): run_atlas exited; CPU time 59138.309167
12:03:50 (6110): called boinc_finish(0)

</stderr_txt>
]]>

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