Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:29:03 (336827): wrapper (7.7.26015): starting
10:29:03 (336827): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 10:29:03] Arguments: --nthreads 12
[2025-07-27 10:29:03] Threads: 12
[2025-07-27 10:29:03] Checking for CVMFS
[2025-07-27 10:29:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 10:29:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 10:29:03] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 10:29:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 10:29:03] 2.13.1.0 129624 6819 116776 148815 0 64 19977320 40960000 8326 16776704 0 7262204 99.549 7373303 39411 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 10:29:03] CVMFS is ok
[2025-07-27 10:29:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 10:29:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 10:29:03] Further information can be found at the LHC@home message board.
[2025-07-27 10:29:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 10:29:03] Checking for apptainer binary...
[2025-07-27 10:29:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 10:29:03] Running /usr/bin/apptainer --version
[2025-07-27 10:29:03] apptainer version 1.4.1-1.el9
[2025-07-27 10:29:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 10:29:04] c-211-9.aglt2.org
[2025-07-27 10:29:04] apptainer works
[2025-07-27 10:29:04] Set ATHENA_PROC_NUMBER=12
[2025-07-27 10:29:04] Set ATHENA_CORE_NUMBER=12
[2025-07-27 10:29:04] Starting ATLAS job with PandaID=6746742067
[2025-07-27 10:29:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 13:56:42]  *** The last 200 lines of the pilot log: ***
[2025-07-27 13:56:42] 2025-07-27 17:56:06,041 | INFO     | PID=341201 has CPU usage=11.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 13:56:42] 2025-07-27 17:56:06,041 | INFO     | .. there are 6 such processes running
[2025-07-27 13:56:42] 2025-07-27 17:56:08,157 | INFO     | monitor loop #806: job 0:6746742067 is in state 'finished'
[2025-07-27 13:56:42] 2025-07-27 17:56:08,158 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 13:56:42] 2025-07-27 17:56:08,774 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 13:56:42] 2025-07-27 17:56:08,782 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2563.673625
[2025-07-27 13:56:42] 2025-07-27 17:56:08,791 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6746742067/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 13:56:42] 2025-07-27 17:56:08,792 | INFO     | extracted standard info from prmon json
[2025-07-27 13:56:42] 2025-07-27 17:56:08,792 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 13:56:42] 2025-07-27 17:56:08,793 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 13:56:42] 2025-07-27 17:56:08,793 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 13:56:42] 2025-07-27 17:56:08,793 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 13:56:42] 2025-07-27 17:56:08,797 | INFO     | fitting pss+swap vs Time
[2025-07-27 13:56:42] 2025-07-27 17:56:08,798 | INFO     | sum of square deviations: 2594162725.566503
[2025-07-27 13:56:42] 2025-07-27 17:56:08,799 | INFO     | sum of deviations: -18833015761.89162
[2025-07-27 13:56:42] 2025-07-27 17:56:08,800 | INFO     | mean x: 1753632760.5763547
[2025-07-27 13:56:42] 2025-07-27 17:56:08,800 | INFO     | mean y: 2789477.60591133
[2025-07-27 13:56:42] 2025-07-27 17:56:08,800 | INFO     | -- intersect: 12733753921.361795
[2025-07-27 13:56:42] 2025-07-27 17:56:08,800 | INFO     | intersect: 12733753921.361795
[2025-07-27 13:56:42] 2025-07-27 17:56:08,801 | INFO     | chi2: 1.966980160228277
[2025-07-27 13:56:42] 2025-07-27 17:56:08,801 | INFO     | sum of square deviations: 2407208856.363649
[2025-07-27 13:56:42] 2025-07-27 17:56:08,803 | INFO     | sum of deviations: -18150630279.27274
[2025-07-27 13:56:42] 2025-07-27 17:56:08,803 | INFO     | mean x: 1753632608.090909
[2025-07-27 13:56:42] 2025-07-27 17:56:08,803 | INFO     | mean y: 2790034.292929293
[2025-07-27 13:56:42] 2025-07-27 17:56:08,803 | INFO     | -- intersect: 13225380600.537712
[2025-07-27 13:56:42] 2025-07-27 17:56:08,803 | INFO     | intersect: 13225380600.537712
[2025-07-27 13:56:42] 2025-07-27 17:56:08,804 | INFO     | chi2: 1.965222043940045
[2025-07-27 13:56:42] 2025-07-27 17:56:08,804 | INFO     | current chi2=1.965222043940045 (change=0.0893814957456431 %)
[2025-07-27 13:56:42] 2025-07-27 17:56:08,804 | INFO     | right removable region: 197
[2025-07-27 13:56:42] 2025-07-27 17:56:08,804 | INFO     | sum of square deviations: 2407137486.363649
[2025-07-27 13:56:42] 2025-07-27 17:56:08,806 | INFO     | sum of deviations: -56102973121.36365
[2025-07-27 13:56:42] 2025-07-27 17:56:08,806 | INFO     | mean x: 1753632913.090909
[2025-07-27 13:56:42] 2025-07-27 17:56:08,806 | INFO     | mean y: 2819572.52020202
[2025-07-27 13:56:42] 2025-07-27 17:56:08,806 | INFO     | -- intersect: 40874610546.330376
[2025-07-27 13:56:42] 2025-07-27 17:56:08,806 | INFO     | intersect: 40874610546.330376
[2025-07-27 13:56:42] 2025-07-27 17:56:08,807 | INFO     | chi2: 0.35309387238520573
[2025-07-27 13:56:42] 2025-07-27 17:56:08,807 | INFO     | current chi2=0.35309387238520573 (change=82.04893574807447 %)
[2025-07-27 13:56:42] 2025-07-27 17:56:08,807 | INFO     | sum of square deviations: 2229321722.0725427
[2025-07-27 13:56:42] 2025-07-27 17:56:08,808 | INFO     | sum of deviations: -57197070093.23834
[2025-07-27 13:56:42] 2025-07-27 17:56:08,809 | INFO     | mean x: 1753633065.6062176
[2025-07-27 13:56:42] 2025-07-27 17:56:08,809 | INFO     | mean y: 2820441.865284974
[2025-07-27 13:56:42] 2025-07-27 17:56:08,809 | INFO     | -- intersect: 44995282668.47046
[2025-07-27 13:56:42] 2025-07-27 17:56:08,809 | INFO     | intersect: 44995282668.47046
[2025-07-27 13:56:42] 2025-07-27 17:56:08,809 | INFO     | chi2: 0.30691722676847016
[2025-07-27 13:56:42] 2025-07-27 17:56:08,810 | INFO     | current chi2=0.30691722676847016 (change=13.077724998399129 %)
[2025-07-27 13:56:42] 2025-07-27 17:56:08,810 | INFO     | left removable region: 20
[2025-07-27 13:56:42] 2025-07-27 17:56:08,810 | INFO     | sum of square deviations: 1719599494.8587508
[2025-07-27 13:56:42] 2025-07-27 17:56:08,811 | INFO     | sum of deviations: -39026767498.4011
[2025-07-27 13:56:42] 2025-07-27 17:56:08,811 | INFO     | mean x: 1753633187.6384182
[2025-07-27 13:56:42] 2025-07-27 17:56:08,812 | INFO     | mean y: 2805967.853107345
[2025-07-27 13:56:42] 2025-07-27 17:56:08,812 | INFO     | -- intersect: 39801977167.92731
[2025-07-27 13:56:42] 2025-07-27 17:56:08,812 | INFO     | intersect: 39801977167.92731
[2025-07-27 13:56:42] 2025-07-27 17:56:08,812 | INFO     | chi2: 0.27301017340554445
[2025-07-27 13:56:42] 2025-07-27 17:56:08,812 | INFO     | -- intersect: 39801977167.92731
[2025-07-27 13:56:42] 2025-07-27 17:56:08,813 | INFO     | current memory leak: -22.70 B/s (using 177 data points, chi2=0.27)
[2025-07-27 13:56:42] 2025-07-27 17:56:08,813 | INFO     | could have reported an average CPU frequency of 2426 MHz (10 samples)
[2025-07-27 13:56:42] 2025-07-27 17:56:08,813 | INFO     | ..............................
[2025-07-27 13:56:42] 2025-07-27 17:56:08,813 | INFO     | . Timing measurements:
[2025-07-27 13:56:42] 2025-07-27 17:56:08,814 | INFO     | . get job = 0 s
[2025-07-27 13:56:42] 2025-07-27 17:56:08,814 | INFO     | . initial setup = 3 s
[2025-07-27 13:56:42] 2025-07-27 17:56:08,814 | INFO     | . payload setup = 11 s
[2025-07-27 13:56:42] 2025-07-27 17:56:08,814 | INFO     | . stage-in = 0 s
[2025-07-27 13:56:42] 2025-07-27 17:56:08,814 | INFO     | . payload execution = 12365 s
[2025-07-27 13:56:42] 2025-07-27 17:56:08,814 | INFO     | . stage-out = 2 s
[2025-07-27 13:56:42] 2025-07-27 17:56:08,814 | INFO     | . log creation = 0 s
[2025-07-27 13:56:42] 2025-07-27 17:56:08,814 | INFO     | ..............................
[2025-07-27 13:56:42] 2025-07-27 17:56:09,332 | INFO     | 
[2025-07-27 13:56:42] 2025-07-27 17:56:09,332 | INFO     | job summary report
[2025-07-27 13:56:42] 2025-07-27 17:56:09,333 | INFO     | --------------------------------------------------
[2025-07-27 13:56:42] 2025-07-27 17:56:09,333 | INFO     | PanDA job id: 6746742067
[2025-07-27 13:56:42] 2025-07-27 17:56:09,333 | INFO     | task id: 45759704
[2025-07-27 13:56:42] 2025-07-27 17:56:09,333 | INFO     | errors: (none)
[2025-07-27 13:56:42] 2025-07-27 17:56:09,333 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 13:56:42] 2025-07-27 17:56:09,333 | INFO     | pilot state: finished 
[2025-07-27 13:56:42] 2025-07-27 17:56:09,333 | INFO     | transexitcode: 0
[2025-07-27 13:56:42] 2025-07-27 17:56:09,333 | INFO     | exeerrorcode: 0
[2025-07-27 13:56:42] 2025-07-27 17:56:09,333 | INFO     | exeerrordiag: 
[2025-07-27 13:56:42] 2025-07-27 17:56:09,334 | INFO     | exitcode: 0
[2025-07-27 13:56:42] 2025-07-27 17:56:09,334 | INFO     | exitmsg: OK
[2025-07-27 13:56:42] 2025-07-27 17:56:09,334 | INFO     | cpuconsumptiontime: 81158 s
[2025-07-27 13:56:42] 2025-07-27 17:56:09,334 | INFO     | nevents: 400
[2025-07-27 13:56:42] 2025-07-27 17:56:09,334 | INFO     | neventsw: 0
[2025-07-27 13:56:42] 2025-07-27 17:56:09,334 | INFO     | pid: 348026
[2025-07-27 13:56:42] 2025-07-27 17:56:09,334 | INFO     | pgrp: 348026
[2025-07-27 13:56:42] 2025-07-27 17:56:09,334 | INFO     | corecount: 12
[2025-07-27 13:56:42] 2025-07-27 17:56:09,335 | INFO     | event service: False
[2025-07-27 13:56:42] 2025-07-27 17:56:09,335 | INFO     | sizes: {0: 2396646, 1: 2397502, 2: 2397502, 9: 2397792, 12: 2397820, 12380: 2427914, 12381: 2428041, 12384: 2437151, 12389: 2437289}
[2025-07-27 13:56:42] 2025-07-27 17:56:09,335 | INFO     | --------------------------------------------------
[2025-07-27 13:56:42] 2025-07-27 17:56:09,335 | INFO     | 
[2025-07-27 13:56:42] 2025-07-27 17:56:09,335 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 13:56:42] 2025-07-27 17:56:09,359 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 13:56:42] 2025-07-27 17:56:09,360 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 13:56:42] 2025-07-27 17:56:09,360 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 13:56:42] 2025-07-27 17:56:09,360 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 13:56:42] 2025-07-27 17:56:09,360 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 13:56:42] 2025-07-27 17:56:09,361 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 13:56:42] 2025-07-27 17:56:09,361 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 13:56:42] 2025-07-27 17:56:09,361 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 13:56:42] 2025-07-27 17:56:09,361 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 13:56:42] 2025-07-27 17:56:09,361 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 13:56:42] 2025-07-27 17:56:09,361 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 13:56:42] 2025-07-27 17:56:09,362 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 13:56:42] 2025-07-27 17:56:09,362 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 13:56:42] 2025-07-27 17:56:09,362 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 13:56:42] 2025-07-27 17:56:09,362 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 13:56:42] 2025-07-27 17:56:09,362 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 13:56:42] 2025-07-27 17:56:09,362 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 13:56:42] 2025-07-27 17:56:09,362 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 13:56:42] 2025-07-27 17:56:09,363 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 13:56:42] 2025-07-27 17:56:09,363 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 13:56:42] 2025-07-27 17:56:09,363 | INFO     | job 6746742067 has completed (purged errors)
[2025-07-27 13:56:42] 2025-07-27 17:56:09,363 | INFO     | overall cleanup function is called
[2025-07-27 13:56:42] 2025-07-27 17:56:10,372 | INFO     | --- collectZombieJob: --- 10, [348026]
[2025-07-27 13:56:42] 2025-07-27 17:56:10,373 | INFO     | zombie collector waiting for pid 348026
[2025-07-27 13:56:42] 2025-07-27 17:56:10,373 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 13:56:42] 2025-07-27 17:56:10,373 | INFO     | collected zombie processes
[2025-07-27 13:56:42] 2025-07-27 17:56:10,373 | INFO     | will attempt to kill all subprocesses of pid=348026
[2025-07-27 13:56:42] 2025-07-27 17:56:10,622 | INFO     | process IDs to be killed: [348026] (in reverse order)
[2025-07-27 13:56:42] 2025-07-27 17:56:10,696 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 13:56:42] 2025-07-27 17:56:10,696 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 13:56:42] 2025-07-27 17:56:10,704 | INFO     | did not find any defunct processes belonging to 348026
[2025-07-27 13:56:42] 2025-07-27 17:56:10,712 | INFO     | did not find any defunct processes belonging to 348026
[2025-07-27 13:56:42] 2025-07-27 17:56:10,712 | INFO     | ready for new job
[2025-07-27 13:56:42] 2025-07-27 17:56:10,712 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 13:56:42] 2025-07-27 17:56:10,714 | INFO     | ***************************************
[2025-07-27 13:56:42] 2025-07-27 17:56:10,714 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 13:56:42] 2025-07-27 17:56:10,715 | INFO     | ***************************************
[2025-07-27 13:56:42] 2025-07-27 17:56:10,715 | INFO     | 
[2025-07-27 13:56:42] 2025-07-27 17:56:10,717 | INFO     | architecture information:
[2025-07-27 13:56:42] 2025-07-27 17:56:10,718 | INFO     | executing command: cat /etc/os-release
[2025-07-27 13:56:42] 2025-07-27 17:56:10,733 | INFO     | cat /etc/os-release:
[2025-07-27 13:56:42] NAME="CentOS Linux"
[2025-07-27 13:56:42] VERSION="7 (Core)"
[2025-07-27 13:56:42] ID="centos"
[2025-07-27 13:56:42] ID_LIKE="rhel fedora"
[2025-07-27 13:56:42] VERSION_ID="7"
[2025-07-27 13:56:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 13:56:42] ANSI_COLOR="0;31"
[2025-07-27 13:56:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 13:56:42] HOME_URL="https://www.centos.org/"
[2025-07-27 13:56:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 13:56:42] 
[2025-07-27 13:56:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 13:56:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 13:56:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 13:56:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 13:56:42] 
[2025-07-27 13:56:42] 2025-07-27 17:56:10,733 | INFO     | ***************************************
[2025-07-27 13:56:42] 2025-07-27 17:56:11,235 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 13:56:42] 2025-07-27 17:56:11,259 | INFO     | sufficient remaining disk space (64548241408 B)
[2025-07-27 13:56:42] 2025-07-27 17:56:11,259 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 13:56:42] 2025-07-27 17:56:11,259 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 13:56:42] 2025-07-27 17:56:11,260 | INFO     | update_server=False
[2025-07-27 13:56:42] 2025-07-27 17:56:11,260 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 13:56:42] 2025-07-27 17:56:11,260 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 13:56:42] 2025-07-27 17:56:11,439 | INFO     | all job control threads have been joined
[2025-07-27 13:56:42] 2025-07-27 17:56:11,665 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 13:56:42] 2025-07-27 17:56:11,665 | INFO     | aborting loop
[2025-07-27 13:56:42] 2025-07-27 17:56:11,910 | INFO     | all data control threads have been joined
[2025-07-27 13:56:42] 2025-07-27 17:56:12,264 | INFO     | [job] retrieve thread has finished
[2025-07-27 13:56:42] 2025-07-27 17:56:12,267 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 13:56:42] 2025-07-27 17:56:12,270 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 13:56:42] 2025-07-27 17:56:12,444 | INFO     | [job] control thread has finished
[2025-07-27 13:56:42] 2025-07-27 17:56:12,453 | INFO     | all payload control threads have been joined
[2025-07-27 13:56:42] 2025-07-27 17:56:12,641 | INFO     | [data] copytool_in thread has finished
[2025-07-27 13:56:42] 2025-07-27 17:56:12,671 | INFO     | [job] job monitor thread has finished
[2025-07-27 13:56:42] 2025-07-27 17:56:12,749 | INFO     | [payload] failed_post thread has finished
[2025-07-27 13:56:42] 2025-07-27 17:56:12,874 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 13:56:42] 2025-07-27 17:56:12,915 | INFO     | [data] control thread has finished
[2025-07-27 13:56:42] 2025-07-27 17:56:13,414 | INFO     | [payload] validate_post thread has finished
[2025-07-27 13:56:42] 2025-07-27 17:56:13,458 | INFO     | [payload] control thread has finished
[2025-07-27 13:56:42] 2025-07-27 17:56:13,592 | INFO     | [job] validate thread has finished
[2025-07-27 13:56:42] 2025-07-27 17:56:13,597 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 13:56:42] 2025-07-27 17:56:13,757 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 13:56:42] 2025-07-27 17:56:13,912 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 13:56:42] 2025-07-27 17:56:14,275 | INFO     | [data] copytool_out thread has finished
[2025-07-27 13:56:42] 2025-07-27 17:56:14,918 | INFO     | [job] queue monitor thread has finished
[2025-07-27 13:56:42] 2025-07-27 17:56:15,265 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 13:56:42] 2025-07-27 17:56:16,542 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140476563040064)>', '<ExcThread(monitor, started 140476216760064)>']
[2025-07-27 13:56:42] 2025-07-27 17:56:21,567 | INFO     | all workflow threads have been joined
[2025-07-27 13:56:42] 2025-07-27 17:56:21,567 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 13:56:42] 2025-07-27 17:56:21,568 | INFO     | traces error code: 0
[2025-07-27 13:56:42] 2025-07-27 17:56:21,568 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 13:56:42] 2025-07-27 17:56:42,428 | INFO     | PID=341201 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 13:56:42] 2025-07-27 17:56:42,429 | INFO     | .. there are 7 such processes running
[2025-07-27 13:56:42] 2025-07-27 17:56:42,429 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 13:56:42] 2025-07-27 17:56:42,429 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 13:56:42] 2025-07-27 17:56:42,429 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 13:56:42] 2025-07-27 17:56:42,429 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 13:56:42] 2025-07-27 17:56:42,429 | INFO     | [monitor] control thread has ended
[2025-07-27 13:56:42] 2025-07-27 17:56:42,634 [wrapper] ==== pilot stdout END ====
[2025-07-27 13:56:42] 2025-07-27 17:56:42,638 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 13:56:42] 2025-07-27 17:56:42,642 [wrapper] pilotpid: 341201
[2025-07-27 13:56:42] 2025-07-27 17:56:42,645 [wrapper] Pilot exit status: 0
[2025-07-27 13:56:42] 2025-07-27 17:56:42,657 [wrapper] pandaids: 6746742067
[2025-07-27 13:56:42] 2025-07-27 17:56:42,700 [wrapper] cleanup supervisor_pilot  551056 341202
[2025-07-27 13:56:42] 2025-07-27 17:56:42,704 [wrapper] Test setup, not cleaning
[2025-07-27 13:56:42] 2025-07-27 17:56:42,708 [wrapper] apfmon messages muted
[2025-07-27 13:56:42] 2025-07-27 17:56:42,711 [wrapper] ==== wrapper stdout END ====
[2025-07-27 13:56:42] 2025-07-27 17:56:42,715 [wrapper] ==== wrapper stderr END ====
[2025-07-27 13:56:42]  *** Error codes and diagnostics ***
[2025-07-27 13:56:42]     "exeErrorCode": 0,
[2025-07-27 13:56:42]     "exeErrorDiag": "",
[2025-07-27 13:56:42]     "pilotErrorCode": 0,
[2025-07-27 13:56:42]     "pilotErrorDiag": "",
[2025-07-27 13:56:42]  *** Listing of results directory ***
[2025-07-27 13:56:42] total 411000
[2025-07-27 13:56:42] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 04:38 pilot3.tar.gz
[2025-07-27 13:56:42] -rwx------. 1 boincer umatlas     36292 Jul 27 04:57 runpilot2-wrapper.sh
[2025-07-27 13:56:42] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 04:57 queuedata.json
[2025-07-27 13:56:42] -rw-r--r--. 1 boincer umatlas       100 Jul 27 10:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 13:56:42] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 10:29 run_atlas
[2025-07-27 13:56:42] -rw-r--r--. 1 boincer umatlas       105 Jul 27 10:29 job.xml
[2025-07-27 13:56:42] -rw-r--r--. 2 boincer umatlas 239244881 Jul 27 10:29 EVNT.45759700._000005.pool.root.1
[2025-07-27 13:56:42] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 10:29 shared
[2025-07-27 13:56:42] -rw-r--r--. 2 boincer umatlas    542884 Jul 27 10:29 input.tar.gz
[2025-07-27 13:56:42] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 10:29 start_atlas.sh
[2025-07-27 13:56:42] -rw-r--r--. 1 boincer umatlas         0 Jul 27 10:29 boinc_lockfile
[2025-07-27 13:56:42] -rw-r--r--. 1 boincer umatlas      2568 Jul 27 10:29 pandaJob.out
[2025-07-27 13:56:42] -rw-------. 1 boincer umatlas    980109 Jul 27 10:29 agis_schedconf.cvmfs.json
[2025-07-27 13:56:42] drwx------. 4 boincer umatlas      4096 Jul 27 10:29 pilot3
[2025-07-27 13:56:42] -rw-r--r--. 1 boincer umatlas      6612 Jul 27 13:48 init_data.xml
[2025-07-27 13:56:42] -rw-------. 1 boincer umatlas 174761388 Jul 27 13:55 HITS.45759704._000101.pool.root.1
[2025-07-27 13:56:42] -rw-r--r--. 1 boincer umatlas       531 Jul 27 13:55 boinc_task_state.xml
[2025-07-27 13:56:42] -rw-------. 1 boincer umatlas      1038 Jul 27 13:55 memory_monitor_summary.json
[2025-07-27 13:56:42] -rw-------. 1 boincer umatlas   1593052 Jul 27 13:56 agis_ddmendpoints.agis.ALL.json
[2025-07-27 13:56:42] -rw-------. 1 boincer umatlas    419734 Jul 27 13:56 log.45759704._000101.job.log.tgz.1
[2025-07-27 13:56:42] -rw-------. 1 boincer umatlas        95 Jul 27 13:56 pilot_heartbeat.json
[2025-07-27 13:56:42] -rw-------. 1 boincer umatlas      7812 Jul 27 13:56 heartbeat.json
[2025-07-27 13:56:42] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 13:56 boinc_mmap_file
[2025-07-27 13:56:42] -rw-r--r--. 1 boincer umatlas        28 Jul 27 13:56 wrapper_checkpoint.txt
[2025-07-27 13:56:42] -rw-------. 1 boincer umatlas       821 Jul 27 13:56 pilotlog.txt
[2025-07-27 13:56:42] -rw-------. 1 boincer umatlas   1070262 Jul 27 13:56 log.45759704._000101.job.log.1
[2025-07-27 13:56:42] -rw-------. 1 boincer umatlas       357 Jul 27 13:56 output.list
[2025-07-27 13:56:42] -rw-r--r--. 1 boincer umatlas       620 Jul 27 13:56 runtime_log
[2025-07-27 13:56:42] -rw-------. 1 boincer umatlas   1505280 Jul 27 13:56 result.tar.gz
[2025-07-27 13:56:42] -rw-------. 1 boincer umatlas       656 Jul 27 13:56 tLdNDmINC07n9Rq4apOajLDm4fhM0noT9bVof3QYDmAI2KDmILA9bm.diag
[2025-07-27 13:56:42] -rw-r--r--. 1 boincer umatlas      8658 Jul 27 13:56 runtime_log.err
[2025-07-27 13:56:42] -rw-r--r--. 1 boincer umatlas     21302 Jul 27 13:56 stderr.txt
[2025-07-27 13:56:42] HITS file was successfully produced:
[2025-07-27 13:56:42] -rw-------. 1 boincer umatlas 174761388 Jul 27 13:55 shared/HITS.pool.root.1
[2025-07-27 13:56:42]  *** Contents of shared directory: ***
[2025-07-27 13:56:42] total 406336
[2025-07-27 13:56:42] -rw-r--r--. 2 boincer umatlas 239244881 Jul 27 10:29 ATLAS.root_0
[2025-07-27 13:56:42] -rw-r--r--. 2 boincer umatlas    542884 Jul 27 10:29 input.tar.gz
[2025-07-27 13:56:42] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 10:29 start_atlas.sh
[2025-07-27 13:56:42] -rw-------. 1 boincer umatlas 174761388 Jul 27 13:55 HITS.pool.root.1
[2025-07-27 13:56:42] -rw-------. 1 boincer umatlas   1505280 Jul 27 13:56 result.tar.gz
13:56:44 (336827): run_atlas exited; CPU time 81396.661107
13:56:44 (336827): called boinc_finish(0)

</stderr_txt>
]]>

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