Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:09:46 (1139470): wrapper (7.7.26015): starting
15:09:46 (1139470): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 15:09:46] Arguments: --nthreads 12
[2025-07-27 15:09:46] Threads: 12
[2025-07-27 15:09:46] Checking for CVMFS
[2025-07-27 15:09:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 15:09:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 15:09:47] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 15:09:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 15:09:47] 2.12.6.0 240040 18766 324476 148821 1 640 20855893 32935937 16690 16776704 1 59098413 99.765 56424701 10721 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 15:09:47] CVMFS is ok
[2025-07-27 15:09:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 15:09:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 15:09:47] Further information can be found at the LHC@home message board.
[2025-07-27 15:09:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 15:09:47] Checking for apptainer binary...
[2025-07-27 15:09:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 15:09:47] Running /usr/bin/apptainer --version
[2025-07-27 15:09:47] apptainer version 1.4.1-1.el9
[2025-07-27 15:09:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 15:09:47] c6-1-24-2.aglt2.org
[2025-07-27 15:09:47] apptainer works
[2025-07-27 15:09:47] Set ATHENA_PROC_NUMBER=12
[2025-07-27 15:09:47] Set ATHENA_CORE_NUMBER=12
[2025-07-27 15:09:47] Starting ATLAS job with PandaID=6746809208
[2025-07-27 15:09:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 18:00:08]  *** The last 200 lines of the pilot log: ***
[2025-07-27 18:00:08] 2025-07-27 21:59:31,062 | INFO     | PID=1143107 has CPU usage=10.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-27 18:00:08] 2025-07-27 21:59:31,063 | INFO     | .. there are 23 such processes running
[2025-07-27 18:00:08] 2025-07-27 21:59:33,452 | INFO     | monitor loop #622: job 0:6746809208 is in state 'finished'
[2025-07-27 18:00:08] 2025-07-27 21:59:33,452 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 18:00:08] 2025-07-27 21:59:35,318 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 18:00:08] 2025-07-27 21:59:35,321 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2653.4930892857146
[2025-07-27 18:00:08] 2025-07-27 21:59:35,345 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6746809208/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 18:00:08] 2025-07-27 21:59:35,346 | INFO     | extracted standard info from prmon json
[2025-07-27 18:00:08] 2025-07-27 21:59:35,346 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 18:00:08] 2025-07-27 21:59:35,346 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 18:00:08] 2025-07-27 21:59:35,347 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 18:00:08] 2025-07-27 21:59:35,347 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 18:00:08] 2025-07-27 21:59:35,351 | INFO     | fitting pss+swap vs Time
[2025-07-27 18:00:08] 2025-07-27 21:59:35,351 | INFO     | sum of square deviations: 1418550802.0
[2025-07-27 18:00:08] 2025-07-27 21:59:35,353 | INFO     | sum of deviations: 13893276709.999996
[2025-07-27 18:00:08] 2025-07-27 21:59:35,353 | INFO     | mean x: 1753648463.0
[2025-07-27 18:00:08] 2025-07-27 21:59:35,353 | INFO     | mean y: 2393155.0722891567
[2025-07-27 18:00:08] 2025-07-27 21:59:35,353 | INFO     | -- intersect: -17172827721.173206
[2025-07-27 18:00:08] 2025-07-27 21:59:35,353 | INFO     | intersect: -17172827721.173206
[2025-07-27 18:00:08] 2025-07-27 21:59:35,354 | INFO     | chi2: 1.494501319637776
[2025-07-27 18:00:08] 2025-07-27 21:59:35,354 | INFO     | sum of square deviations: 1294219716.2360225
[2025-07-27 18:00:08] 2025-07-27 21:59:35,355 | INFO     | sum of deviations: 15125616583.962736
[2025-07-27 18:00:08] 2025-07-27 21:59:35,355 | INFO     | mean x: 1753648310.5093167
[2025-07-27 18:00:08] 2025-07-27 21:59:35,355 | INFO     | mean y: 2394645.0248447205
[2025-07-27 18:00:08] 2025-07-27 21:59:35,356 | INFO     | -- intersect: -20492589039.05981
[2025-07-27 18:00:08] 2025-07-27 21:59:35,356 | INFO     | intersect: -20492589039.05981
[2025-07-27 18:00:08] 2025-07-27 21:59:35,356 | INFO     | chi2: 1.4901620197872403
[2025-07-27 18:00:08] 2025-07-27 21:59:35,356 | INFO     | current chi2=1.4901620197872403 (change=0.2903510216764177 %)
[2025-07-27 18:00:08] 2025-07-27 21:59:35,356 | INFO     | right removable region: 160
[2025-07-27 18:00:08] 2025-07-27 21:59:35,357 | INFO     | sum of square deviations: 1294178968.211184
[2025-07-27 18:00:08] 2025-07-27 21:59:35,357 | INFO     | sum of deviations: -11714026184.571426
[2025-07-27 18:00:08] 2025-07-27 21:59:35,358 | INFO     | mean x: 1753648615.515528
[2025-07-27 18:00:08] 2025-07-27 21:59:35,358 | INFO     | mean y: 2424213.4285714286
[2025-07-27 18:00:08] 2025-07-27 21:59:35,358 | INFO     | -- intersect: 15875256569.126562
[2025-07-27 18:00:08] 2025-07-27 21:59:35,358 | INFO     | intersect: 15875256569.126562
[2025-07-27 18:00:08] 2025-07-27 21:59:35,358 | INFO     | chi2: 0.06446953678512808
[2025-07-27 18:00:08] 2025-07-27 21:59:35,358 | INFO     | current chi2=0.06446953678512808 (change=95.68621747348115 %)
[2025-07-27 18:00:08] 2025-07-27 21:59:35,359 | INFO     | sum of square deviations: 1177295646.83975
[2025-07-27 18:00:08] 2025-07-27 21:59:35,360 | INFO     | sum of deviations: -13307554882.102564
[2025-07-27 18:00:08] 2025-07-27 21:59:35,360 | INFO     | mean x: 1753648768.0320513
[2025-07-27 18:00:08] 2025-07-27 21:59:35,360 | INFO     | mean y: 2426253.8205128205
[2025-07-27 18:00:08] 2025-07-27 21:59:35,360 | INFO     | -- intersect: 19824785477.828247
[2025-07-27 18:00:08] 2025-07-27 21:59:35,360 | INFO     | intersect: 19824785477.828247
[2025-07-27 18:00:08] 2025-07-27 21:59:35,361 | INFO     | chi2: 0.0483619466915752
[2025-07-27 18:00:08] 2025-07-27 21:59:35,361 | INFO     | current chi2=0.0483619466915752 (change=24.984808169536283 %)
[2025-07-27 18:00:08] 2025-07-27 21:59:35,361 | INFO     | left removable region: 20
[2025-07-27 18:00:08] 2025-07-27 21:59:35,361 | INFO     | sum of square deviations: 850935333.2857145
[2025-07-27 18:00:08] 2025-07-27 21:59:35,362 | INFO     | sum of deviations: -9044049667.714287
[2025-07-27 18:00:08] 2025-07-27 21:59:35,362 | INFO     | mean x: 1753648890.0714285
[2025-07-27 18:00:08] 2025-07-27 21:59:35,362 | INFO     | mean y: 2426493.3714285716
[2025-07-27 18:00:08] 2025-07-27 21:59:35,363 | INFO     | -- intersect: 18640843587.06234
[2025-07-27 18:00:08] 2025-07-27 21:59:35,363 | INFO     | intersect: 18640843587.06234
[2025-07-27 18:00:08] 2025-07-27 21:59:35,363 | INFO     | chi2: 0.04375145731277635
[2025-07-27 18:00:08] 2025-07-27 21:59:35,363 | INFO     | -- intersect: 18640843587.06234
[2025-07-27 18:00:08] 2025-07-27 21:59:35,363 | INFO     | current memory leak: -10.63 B/s (using 140 data points, chi2=0.04)
[2025-07-27 18:00:08] 2025-07-27 21:59:35,364 | INFO     | could have reported an average CPU frequency of 2730 MHz (9 samples)
[2025-07-27 18:00:08] 2025-07-27 21:59:35,364 | INFO     | ..............................
[2025-07-27 18:00:08] 2025-07-27 21:59:35,364 | INFO     | . Timing measurements:
[2025-07-27 18:00:08] 2025-07-27 21:59:35,365 | INFO     | . get job = 0 s
[2025-07-27 18:00:08] 2025-07-27 21:59:35,365 | INFO     | . initial setup = 2 s
[2025-07-27 18:00:08] 2025-07-27 21:59:35,365 | INFO     | . payload setup = 8 s
[2025-07-27 18:00:08] 2025-07-27 21:59:35,365 | INFO     | . stage-in = 0 s
[2025-07-27 18:00:08] 2025-07-27 21:59:35,365 | INFO     | . payload execution = 10126 s
[2025-07-27 18:00:08] 2025-07-27 21:59:35,365 | INFO     | . stage-out = 1 s
[2025-07-27 18:00:08] 2025-07-27 21:59:35,365 | INFO     | . log creation = 0 s
[2025-07-27 18:00:08] 2025-07-27 21:59:35,365 | INFO     | ..............................
[2025-07-27 18:00:08] 2025-07-27 21:59:35,523 | INFO     | 
[2025-07-27 18:00:08] 2025-07-27 21:59:35,524 | INFO     | job summary report
[2025-07-27 18:00:08] 2025-07-27 21:59:35,524 | INFO     | --------------------------------------------------
[2025-07-27 18:00:08] 2025-07-27 21:59:35,524 | INFO     | PanDA job id: 6746809208
[2025-07-27 18:00:08] 2025-07-27 21:59:35,524 | INFO     | task id: 45743349
[2025-07-27 18:00:08] 2025-07-27 21:59:35,524 | INFO     | errors: (none)
[2025-07-27 18:00:08] 2025-07-27 21:59:35,524 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 18:00:08] 2025-07-27 21:59:35,524 | INFO     | pilot state: finished 
[2025-07-27 18:00:08] 2025-07-27 21:59:35,524 | INFO     | transexitcode: 0
[2025-07-27 18:00:08] 2025-07-27 21:59:35,524 | INFO     | exeerrorcode: 0
[2025-07-27 18:00:08] 2025-07-27 21:59:35,524 | INFO     | exeerrordiag: 
[2025-07-27 18:00:08] 2025-07-27 21:59:35,524 | INFO     | exitcode: 0
[2025-07-27 18:00:08] 2025-07-27 21:59:35,524 | INFO     | exitmsg: OK
[2025-07-27 18:00:08] 2025-07-27 21:59:35,524 | INFO     | cpuconsumptiontime: 48065 s
[2025-07-27 18:00:08] 2025-07-27 21:59:35,524 | INFO     | nevents: 400
[2025-07-27 18:00:08] 2025-07-27 21:59:35,524 | INFO     | neventsw: 0
[2025-07-27 18:00:08] 2025-07-27 21:59:35,524 | INFO     | pid: 1157368
[2025-07-27 18:00:08] 2025-07-27 21:59:35,525 | INFO     | pgrp: 1157368
[2025-07-27 18:00:08] 2025-07-27 21:59:35,525 | INFO     | corecount: 12
[2025-07-27 18:00:08] 2025-07-27 21:59:35,525 | INFO     | event service: False
[2025-07-27 18:00:08] 2025-07-27 21:59:35,525 | INFO     | sizes: {0: 2397423, 1: 2397423, 6: 2397713, 11: 2397741, 10139: 2426278, 10142: 2435460, 10160: 2435662}
[2025-07-27 18:00:08] 2025-07-27 21:59:35,525 | INFO     | --------------------------------------------------
[2025-07-27 18:00:08] 2025-07-27 21:59:35,525 | INFO     | 
[2025-07-27 18:00:08] 2025-07-27 21:59:35,525 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 18:00:08] 2025-07-27 21:59:35,567 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 18:00:08] 2025-07-27 21:59:35,568 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 18:00:08] 2025-07-27 21:59:35,568 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 18:00:08] 2025-07-27 21:59:35,568 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 18:00:08] 2025-07-27 21:59:35,568 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 18:00:08] 2025-07-27 21:59:35,568 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 18:00:08] 2025-07-27 21:59:35,568 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 18:00:08] 2025-07-27 21:59:35,568 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 18:00:08] 2025-07-27 21:59:35,568 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 18:00:08] 2025-07-27 21:59:35,568 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 18:00:08] 2025-07-27 21:59:35,568 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 18:00:08] 2025-07-27 21:59:35,568 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 18:00:08] 2025-07-27 21:59:35,569 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 18:00:08] 2025-07-27 21:59:35,569 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 18:00:08] 2025-07-27 21:59:35,569 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 18:00:08] 2025-07-27 21:59:35,569 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 18:00:08] 2025-07-27 21:59:35,569 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 18:00:08] 2025-07-27 21:59:35,569 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 18:00:08] 2025-07-27 21:59:35,569 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 18:00:08] 2025-07-27 21:59:35,569 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 18:00:08] 2025-07-27 21:59:35,569 | INFO     | job 6746809208 has completed (purged errors)
[2025-07-27 18:00:08] 2025-07-27 21:59:35,570 | INFO     | overall cleanup function is called
[2025-07-27 18:00:08] 2025-07-27 21:59:36,579 | INFO     | --- collectZombieJob: --- 10, [1157368]
[2025-07-27 18:00:08] 2025-07-27 21:59:36,580 | INFO     | zombie collector waiting for pid 1157368
[2025-07-27 18:00:08] 2025-07-27 21:59:36,580 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 18:00:08] 2025-07-27 21:59:36,580 | INFO     | collected zombie processes
[2025-07-27 18:00:08] 2025-07-27 21:59:36,580 | INFO     | will attempt to kill all subprocesses of pid=1157368
[2025-07-27 18:00:08] 2025-07-27 21:59:36,997 | INFO     | process IDs to be killed: [1157368] (in reverse order)
[2025-07-27 18:00:08] 2025-07-27 21:59:37,104 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 18:00:08] 2025-07-27 21:59:37,104 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 18:00:08] 2025-07-27 21:59:37,127 | INFO     | did not find any defunct processes belonging to 1157368
[2025-07-27 18:00:08] 2025-07-27 21:59:37,144 | INFO     | did not find any defunct processes belonging to 1157368
[2025-07-27 18:00:08] 2025-07-27 21:59:37,144 | INFO     | ready for new job
[2025-07-27 18:00:08] 2025-07-27 21:59:37,144 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 18:00:08] 2025-07-27 21:59:37,146 | INFO     | ***************************************
[2025-07-27 18:00:08] 2025-07-27 21:59:37,146 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 18:00:08] 2025-07-27 21:59:37,146 | INFO     | ***************************************
[2025-07-27 18:00:08] 2025-07-27 21:59:37,146 | INFO     | 
[2025-07-27 18:00:08] 2025-07-27 21:59:37,173 | INFO     | architecture information:
[2025-07-27 18:00:08] 2025-07-27 21:59:37,173 | INFO     | executing command: cat /etc/os-release
[2025-07-27 18:00:08] 2025-07-27 21:59:37,199 | INFO     | cat /etc/os-release:
[2025-07-27 18:00:08] NAME="CentOS Linux"
[2025-07-27 18:00:08] VERSION="7 (Core)"
[2025-07-27 18:00:08] ID="centos"
[2025-07-27 18:00:08] ID_LIKE="rhel fedora"
[2025-07-27 18:00:08] VERSION_ID="7"
[2025-07-27 18:00:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 18:00:08] ANSI_COLOR="0;31"
[2025-07-27 18:00:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 18:00:08] HOME_URL="https://www.centos.org/"
[2025-07-27 18:00:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 18:00:08] 
[2025-07-27 18:00:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 18:00:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 18:00:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 18:00:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 18:00:08] 
[2025-07-27 18:00:08] 2025-07-27 21:59:37,199 | INFO     | ***************************************
[2025-07-27 18:00:08] 2025-07-27 21:59:37,703 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 18:00:08] 2025-07-27 21:59:37,729 | INFO     | sufficient remaining disk space (76348915712 B)
[2025-07-27 18:00:08] 2025-07-27 21:59:37,730 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 18:00:08] 2025-07-27 21:59:37,730 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 18:00:08] 2025-07-27 21:59:37,730 | INFO     | update_server=False
[2025-07-27 18:00:08] 2025-07-27 21:59:37,730 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 18:00:08] 2025-07-27 21:59:37,730 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 18:00:08] 2025-07-27 21:59:37,731 | INFO     | aborting loop
[2025-07-27 18:00:08] 2025-07-27 21:59:37,894 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 18:00:08] 2025-07-27 21:59:37,988 | INFO     | all data control threads have been joined
[2025-07-27 18:00:08] 2025-07-27 21:59:38,070 | INFO     | all payload control threads have been joined
[2025-07-27 18:00:08] 2025-07-27 21:59:38,143 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 18:00:08] 2025-07-27 21:59:38,736 | INFO     | [job] retrieve thread has finished
[2025-07-27 18:00:08] 2025-07-27 21:59:38,737 | INFO     | [job] job monitor thread has finished
[2025-07-27 18:00:08] 2025-07-27 21:59:38,780 | INFO     | [payload] validate_post thread has finished
[2025-07-27 18:00:08] 2025-07-27 21:59:38,827 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 18:00:08] 2025-07-27 21:59:38,866 | INFO     | all job control threads have been joined
[2025-07-27 18:00:08] 2025-07-27 21:59:38,995 | INFO     | [data] control thread has finished
[2025-07-27 18:00:08] 2025-07-27 21:59:39,077 | INFO     | [payload] control thread has finished
[2025-07-27 18:00:08] 2025-07-27 21:59:39,119 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 18:00:08] 2025-07-27 21:59:39,345 | INFO     | [payload] failed_post thread has finished
[2025-07-27 18:00:08] 2025-07-27 21:59:39,518 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 18:00:08] 2025-07-27 21:59:39,759 | INFO     | [job] validate thread has finished
[2025-07-27 18:00:08] 2025-07-27 21:59:39,871 | INFO     | [job] control thread has finished
[2025-07-27 18:00:08] 2025-07-27 21:59:39,912 | INFO     | [data] copytool_in thread has finished
[2025-07-27 18:00:08] 2025-07-27 21:59:40,150 | INFO     | [data] copytool_out thread has finished
[2025-07-27 18:00:08] 2025-07-27 21:59:40,186 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 18:00:08] 2025-07-27 21:59:40,540 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 18:00:08] 2025-07-27 21:59:41,546 | INFO     | [job] queue monitor thread has finished
[2025-07-27 18:00:08] 2025-07-27 21:59:41,903 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 18:00:08] 2025-07-27 21:59:42,217 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140684821088064)>', '<ExcThread(monitor, started 140684178736896)>']
[2025-07-27 18:00:08] 2025-07-27 21:59:47,243 | INFO     | all workflow threads have been joined
[2025-07-27 18:00:08] 2025-07-27 21:59:47,244 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 18:00:08] 2025-07-27 21:59:47,244 | INFO     | traces error code: 0
[2025-07-27 18:00:08] 2025-07-27 21:59:47,244 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 18:00:08] 2025-07-27 22:00:07,546 | INFO     | PID=1143107 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 18:00:08] 2025-07-27 22:00:07,546 | INFO     | .. there are 23 such processes running
[2025-07-27 18:00:08] 2025-07-27 22:00:07,547 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 18:00:08] 2025-07-27 22:00:07,547 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 18:00:08] 2025-07-27 22:00:07,547 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 18:00:08] 2025-07-27 22:00:07,547 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 18:00:08] 2025-07-27 22:00:07,548 | INFO     | [monitor] control thread has ended
[2025-07-27 18:00:08] 2025-07-27 22:00:07,740 [wrapper] ==== pilot stdout END ====
[2025-07-27 18:00:08] 2025-07-27 22:00:07,743 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 18:00:08] 2025-07-27 22:00:07,747 [wrapper] pilotpid: 1143107
[2025-07-27 18:00:08] 2025-07-27 22:00:07,757 [wrapper] Pilot exit status: 0
[2025-07-27 18:00:08] 2025-07-27 22:00:07,812 [wrapper] pandaids: 6746809208
[2025-07-27 18:00:08] 2025-07-27 22:00:07,904 [wrapper] cleanup supervisor_pilot 1933658 1143108
[2025-07-27 18:00:08] 2025-07-27 22:00:07,934 [wrapper] Test setup, not cleaning
[2025-07-27 18:00:08] 2025-07-27 22:00:07,939 [wrapper] apfmon messages muted
[2025-07-27 18:00:08] 2025-07-27 22:00:07,944 [wrapper] ==== wrapper stdout END ====
[2025-07-27 18:00:08] 2025-07-27 22:00:07,958 [wrapper] ==== wrapper stderr END ====
[2025-07-27 18:00:08]  *** Error codes and diagnostics ***
[2025-07-27 18:00:08]     "exeErrorCode": 0,
[2025-07-27 18:00:08]     "exeErrorDiag": "",
[2025-07-27 18:00:08]     "pilotErrorCode": 0,
[2025-07-27 18:00:08]     "pilotErrorDiag": "",
[2025-07-27 18:00:08]  *** Listing of results directory ***
[2025-07-27 18:00:08] total 441488
[2025-07-27 18:00:08] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 04:38 pilot3.tar.gz
[2025-07-27 18:00:08] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 05:04 queuedata.json
[2025-07-27 18:00:08] -rwx------. 1 boincer umatlas     36292 Jul 27 05:05 runpilot2-wrapper.sh
[2025-07-27 18:00:08] -rw-r--r--. 1 boincer umatlas       100 Jul 27 15:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 18:00:08] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 15:09 run_atlas
[2025-07-27 18:00:08] -rw-r--r--. 1 boincer umatlas       105 Jul 27 15:09 job.xml
[2025-07-27 18:00:08] -rw-r--r--. 2 boincer umatlas 229390103 Jul 27 15:09 EVNT.45743347._001403.pool.root.1
[2025-07-27 18:00:08] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 15:09 start_atlas.sh
[2025-07-27 18:00:08] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 15:09 shared
[2025-07-27 18:00:08] -rw-r--r--. 2 boincer umatlas    542900 Jul 27 15:09 input.tar.gz
[2025-07-27 18:00:08] -rw-r--r--. 1 boincer umatlas         0 Jul 27 15:09 boinc_lockfile
[2025-07-27 18:00:08] -rw-r--r--. 1 boincer umatlas      2562 Jul 27 15:09 pandaJob.out
[2025-07-27 18:00:08] -rw-------. 1 boincer umatlas    980125 Jul 27 15:09 agis_schedconf.cvmfs.json
[2025-07-27 18:00:08] -rw-------. 1 boincer umatlas   1593052 Jul 27 15:09 agis_ddmendpoints.agis.ALL.json
[2025-07-27 18:00:08] drwx------. 4 boincer umatlas      4096 Jul 27 15:09 pilot3
[2025-07-27 18:00:08] -rw-r--r--. 1 boincer umatlas      6844 Jul 27 17:57 init_data.xml
[2025-07-27 18:00:08] -rw-------. 1 boincer umatlas 216301090 Jul 27 17:58 HITS.45743349._046388.pool.root.1
[2025-07-27 18:00:08] -rw-r--r--. 1 boincer umatlas       531 Jul 27 17:58 boinc_task_state.xml
[2025-07-27 18:00:08] -rw-------. 1 boincer umatlas      1041 Jul 27 17:59 memory_monitor_summary.json
[2025-07-27 18:00:08] -rw-------. 1 boincer umatlas    408567 Jul 27 17:59 log.45743349._046388.job.log.tgz.1
[2025-07-27 18:00:08] -rw-------. 1 boincer umatlas      7831 Jul 27 17:59 heartbeat.json
[2025-07-27 18:00:08] -rw-r--r--. 1 boincer umatlas        27 Jul 27 17:59 wrapper_checkpoint.txt
[2025-07-27 18:00:08] -rw-------. 1 boincer umatlas        95 Jul 27 18:00 pilot_heartbeat.json
[2025-07-27 18:00:08] -rw-------. 1 boincer umatlas       823 Jul 27 18:00 pilotlog.txt
[2025-07-27 18:00:08] -rw-------. 1 boincer umatlas    848151 Jul 27 18:00 log.45743349._046388.job.log.1
[2025-07-27 18:00:08] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 18:00 boinc_mmap_file
[2025-07-27 18:00:08] -rw-------. 1 boincer umatlas       357 Jul 27 18:00 output.list
[2025-07-27 18:00:08] -rw-r--r--. 1 boincer umatlas       620 Jul 27 18:00 runtime_log
[2025-07-27 18:00:08] -rw-------. 1 boincer umatlas   1280000 Jul 27 18:00 result.tar.gz
[2025-07-27 18:00:08] -rw-r--r--. 1 boincer umatlas      8668 Jul 27 18:00 runtime_log.err
[2025-07-27 18:00:08] -rw-------. 1 boincer umatlas       657 Jul 27 18:00 k11NDmLVC07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmWqULDmV8kj8n.diag
[2025-07-27 18:00:08] -rw-r--r--. 1 boincer umatlas     21056 Jul 27 18:00 stderr.txt
[2025-07-27 18:00:08] HITS file was successfully produced:
[2025-07-27 18:00:08] -rw-------. 1 boincer umatlas 216301090 Jul 27 17:58 shared/HITS.pool.root.1
[2025-07-27 18:00:08]  *** Contents of shared directory: ***
[2025-07-27 18:00:08] total 437052
[2025-07-27 18:00:08] -rw-r--r--. 2 boincer umatlas 229390103 Jul 27 15:09 ATLAS.root_0
[2025-07-27 18:00:08] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 15:09 start_atlas.sh
[2025-07-27 18:00:08] -rw-r--r--. 2 boincer umatlas    542900 Jul 27 15:09 input.tar.gz
[2025-07-27 18:00:08] -rw-------. 1 boincer umatlas 216301090 Jul 27 17:58 HITS.pool.root.1
[2025-07-27 18:00:08] -rw-------. 1 boincer umatlas   1280000 Jul 27 18:00 result.tar.gz
18:00:29 (1139470): run_atlas exited; CPU time 48358.247207
18:00:29 (1139470): called boinc_finish(0)

</stderr_txt>
]]>

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