Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:53:56 (740479): wrapper (7.7.26015): starting
11:53:56 (740479): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 11:53:56] Arguments: --nthreads 12
[2025-07-27 11:53:56] Threads: 12
[2025-07-27 11:53:56] Checking for CVMFS
[2025-07-27 11:53:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 11:53:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 11:53:57] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 11:53:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 11:53:57] 2.13.1.0 407057 13654 282540 148817 1 65 36014971 40960001 9579 16776704 0 24194120 99.687 39221095 35263 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 11:53:57] CVMFS is ok
[2025-07-27 11:53:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 11:53:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 11:53:57] Further information can be found at the LHC@home message board.
[2025-07-27 11:53:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 11:53:57] Checking for apptainer binary...
[2025-07-27 11:53:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 11:53:57] Running /usr/bin/apptainer --version
[2025-07-27 11:53:57] apptainer version 1.4.1-1.el9
[2025-07-27 11:53:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 11:53:57] c-210-31-3.aglt2.org
[2025-07-27 11:53:57] apptainer works
[2025-07-27 11:53:57] Set ATHENA_PROC_NUMBER=12
[2025-07-27 11:53:57] Set ATHENA_CORE_NUMBER=12
[2025-07-27 11:53:57] Starting ATLAS job with PandaID=6747376592
[2025-07-27 11:53:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 13:27:57]  *** The last 200 lines of the pilot log: ***
[2025-07-27 13:27:57]  replicas=None
[2025-07-27 13:27:57]  scope=mc23_13p6TeV
[2025-07-27 13:27:57]  status=None
[2025-07-27 13:27:57]  status_code=0
[2025-07-27 13:27:57]  storage_token=
[2025-07-27 13:27:57]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747376592/log.45743349._047801.job.log.tgz.1
[2025-07-27 13:27:57]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5c/86/log.45743349._047801.job.log.tgz.1
[2025-07-27 13:27:57]  workdir=None
[2025-07-27 13:27:57] ]
[2025-07-27 13:27:57] 2025-07-27 17:27:13,829 | INFO     | transferring file log.45743349._047801.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747376592/log.45743349._047801.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 13:27:57] 2025-07-27 17:27:13,829 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747376592/log.45743349._047801.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._047801.job
[2025-07-27 13:27:57] 2025-07-27 17:27:13,853 | INFO     | adding to output.list: log.45743349._047801.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5c/86/log.45743349._047801.job.log.tg
[2025-07-27 13:27:57] 2025-07-27 17:27:13,855 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 13:27:57] 2025-07-27 17:27:13,855 | INFO     | summary of transferred files:
[2025-07-27 13:27:57] 2025-07-27 17:27:13,855 | INFO     |  -- lfn=log.45743349._047801.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 13:27:57] 2025-07-27 17:27:13,855 | INFO     | stage-out finished correctly
[2025-07-27 13:27:57] 2025-07-27 17:27:15,094 | INFO     | monitor loop #407: job 0:6747376592 is in state 'finished'
[2025-07-27 13:27:57] 2025-07-27 17:27:15,094 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 13:27:57] 2025-07-27 17:27:16,902 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 13:27:57] 2025-07-27 17:27:17,597 | INFO     | monitor loop #408: job 0:6747376592 is in state 'finished'
[2025-07-27 13:27:57] 2025-07-27 17:27:17,597 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 13:27:57] 2025-07-27 17:27:17,707 | INFO     | job 6747376592 has state=finished
[2025-07-27 13:27:57] 2025-07-27 17:27:17,708 | INFO     | preparing for final server update for job 6747376592 in state='finished'
[2025-07-27 13:27:57] 2025-07-27 17:27:17,709 | INFO     | this job has now completed (state=finished)
[2025-07-27 13:27:57] 2025-07-27 17:27:17,709 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 13:27:57] 2025-07-27 17:27:17,709 | INFO     | log transfer has been attempted: DONE
[2025-07-27 13:27:57] 2025-07-27 17:27:17,709 | INFO     | job 6747376592 has finished - writing final server update
[2025-07-27 13:27:57] 2025-07-27 17:27:17,709 | INFO     | total number of processed events: 400 (read)
[2025-07-27 13:27:57] 2025-07-27 17:27:17,710 | INFO     | executing command: lscpu
[2025-07-27 13:27:57] 2025-07-27 17:27:17,770 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 13:27:57] 2025-07-27 17:27:20,100 | INFO     | monitor loop #409: job 0:6747376592 is in state 'finished'
[2025-07-27 13:27:57] 2025-07-27 17:27:20,100 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 13:27:57] 2025-07-27 17:27:22,605 | INFO     | monitor loop #410: job 0:6747376592 is in state 'finished'
[2025-07-27 13:27:57] 2025-07-27 17:27:22,605 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 13:27:57] 2025-07-27 17:27:23,794 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 13:27:57] 2025-07-27 17:27:23,797 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2611.228732142857
[2025-07-27 13:27:57] 2025-07-27 17:27:23,806 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747376592/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 13:27:57] 2025-07-27 17:27:23,807 | INFO     | extracted standard info from prmon json
[2025-07-27 13:27:57] 2025-07-27 17:27:23,807 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 13:27:57] 2025-07-27 17:27:23,807 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 13:27:57] 2025-07-27 17:27:23,808 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 13:27:57] 2025-07-27 17:27:23,808 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 13:27:57] 2025-07-27 17:27:23,810 | INFO     | fitting pss+swap vs Time
[2025-07-27 13:27:57] 2025-07-27 17:27:23,810 | INFO     | sum of square deviations: 183761585.0
[2025-07-27 13:27:57] 2025-07-27 17:27:23,810 | INFO     | sum of deviations: -12142006720.5
[2025-07-27 13:27:57] 2025-07-27 17:27:23,811 | INFO     | mean x: 1753634520.5
[2025-07-27 13:27:57] 2025-07-27 17:27:23,811 | INFO     | mean y: 2824734.25
[2025-07-27 13:27:57] 2025-07-27 17:27:23,811 | INFO     | -- intersect: 115873843876.8624
[2025-07-27 13:27:57] 2025-07-27 17:27:23,811 | INFO     | intersect: 115873843876.8624
[2025-07-27 13:27:57] 2025-07-27 17:27:23,811 | INFO     | chi2: 0.13282472913566823
[2025-07-27 13:27:57] 2025-07-27 17:27:23,811 | INFO     | -- intersect: 115873843876.8624
[2025-07-27 13:27:57] 2025-07-27 17:27:23,811 | INFO     | current memory leak: -66.07 B/s (using 84 data points, chi2=0.13)
[2025-07-27 13:27:57] 2025-07-27 17:27:23,812 | INFO     | could have reported an average CPU frequency of 2592 MHz (7 samples)
[2025-07-27 13:27:57] 2025-07-27 17:27:23,812 | INFO     | ..............................
[2025-07-27 13:27:57] 2025-07-27 17:27:23,812 | INFO     | . Timing measurements:
[2025-07-27 13:27:57] 2025-07-27 17:27:23,812 | INFO     | . get job = 0 s
[2025-07-27 13:27:57] 2025-07-27 17:27:23,812 | INFO     | . initial setup = 2 s
[2025-07-27 13:27:57] 2025-07-27 17:27:23,812 | INFO     | . payload setup = 9 s
[2025-07-27 13:27:57] 2025-07-27 17:27:23,812 | INFO     | . stage-in = 0 s
[2025-07-27 13:27:57] 2025-07-27 17:27:23,812 | INFO     | . payload execution = 5551 s
[2025-07-27 13:27:57] 2025-07-27 17:27:23,812 | INFO     | . stage-out = 0 s
[2025-07-27 13:27:57] 2025-07-27 17:27:23,812 | INFO     | . log creation = 0 s
[2025-07-27 13:27:57] 2025-07-27 17:27:23,812 | INFO     | ..............................
[2025-07-27 13:27:57] 2025-07-27 17:27:23,906 | INFO     | 
[2025-07-27 13:27:57] 2025-07-27 17:27:23,906 | INFO     | job summary report
[2025-07-27 13:27:57] 2025-07-27 17:27:23,906 | INFO     | --------------------------------------------------
[2025-07-27 13:27:57] 2025-07-27 17:27:23,906 | INFO     | PanDA job id: 6747376592
[2025-07-27 13:27:57] 2025-07-27 17:27:23,906 | INFO     | task id: 45743349
[2025-07-27 13:27:57] 2025-07-27 17:27:23,907 | INFO     | errors: (none)
[2025-07-27 13:27:57] 2025-07-27 17:27:23,907 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 13:27:57] 2025-07-27 17:27:23,907 | INFO     | pilot state: finished 
[2025-07-27 13:27:57] 2025-07-27 17:27:23,907 | INFO     | transexitcode: 0
[2025-07-27 13:27:57] 2025-07-27 17:27:23,907 | INFO     | exeerrorcode: 0
[2025-07-27 13:27:57] 2025-07-27 17:27:23,907 | INFO     | exeerrordiag: 
[2025-07-27 13:27:57] 2025-07-27 17:27:23,907 | INFO     | exitcode: 0
[2025-07-27 13:27:57] 2025-07-27 17:27:23,907 | INFO     | exitmsg: OK
[2025-07-27 13:27:57] 2025-07-27 17:27:23,907 | INFO     | cpuconsumptiontime: 56917 s
[2025-07-27 13:27:57] 2025-07-27 17:27:23,907 | INFO     | nevents: 400
[2025-07-27 13:27:57] 2025-07-27 17:27:23,907 | INFO     | neventsw: 0
[2025-07-27 13:27:57] 2025-07-27 17:27:23,907 | INFO     | pid: 753409
[2025-07-27 13:27:57] 2025-07-27 17:27:23,907 | INFO     | pgrp: 753409
[2025-07-27 13:27:57] 2025-07-27 17:27:23,907 | INFO     | corecount: 12
[2025-07-27 13:27:57] 2025-07-27 17:27:23,907 | INFO     | event service: False
[2025-07-27 13:27:57] 2025-07-27 17:27:23,908 | INFO     | sizes: {0: 2397304, 1: 2397503, 7: 2397765, 11: 2397793, 5564: 2424300, 5565: 2433298, 5568: 2433482, 5575: 2433676}
[2025-07-27 13:27:57] 2025-07-27 17:27:23,908 | INFO     | --------------------------------------------------
[2025-07-27 13:27:57] 2025-07-27 17:27:23,908 | INFO     | 
[2025-07-27 13:27:57] 2025-07-27 17:27:23,908 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 13:27:57] 2025-07-27 17:27:23,933 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 13:27:57] 2025-07-27 17:27:23,933 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 13:27:57] 2025-07-27 17:27:23,934 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 13:27:57] 2025-07-27 17:27:23,934 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 13:27:57] 2025-07-27 17:27:23,934 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 13:27:57] 2025-07-27 17:27:23,934 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 13:27:57] 2025-07-27 17:27:23,934 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 13:27:57] 2025-07-27 17:27:23,934 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 13:27:57] 2025-07-27 17:27:23,934 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 13:27:57] 2025-07-27 17:27:23,934 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 13:27:57] 2025-07-27 17:27:23,934 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 13:27:57] 2025-07-27 17:27:23,934 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 13:27:57] 2025-07-27 17:27:23,935 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 13:27:57] 2025-07-27 17:27:23,935 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 13:27:57] 2025-07-27 17:27:23,935 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 13:27:57] 2025-07-27 17:27:23,935 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 13:27:57] 2025-07-27 17:27:23,935 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 13:27:57] 2025-07-27 17:27:23,936 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 13:27:57] 2025-07-27 17:27:23,937 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 13:27:57] 2025-07-27 17:27:23,937 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 13:27:57] 2025-07-27 17:27:23,937 | INFO     | job 6747376592 has completed (purged errors)
[2025-07-27 13:27:57] 2025-07-27 17:27:23,937 | INFO     | overall cleanup function is called
[2025-07-27 13:27:57] 2025-07-27 17:27:24,249 | INFO     | PID=744107 has CPU usage=11.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 13:27:57] 2025-07-27 17:27:24,249 | INFO     | .. there are 12 such processes running
[2025-07-27 13:27:57] 2025-07-27 17:27:24,945 | INFO     | --- collectZombieJob: --- 10, [753409]
[2025-07-27 13:27:57] 2025-07-27 17:27:24,945 | INFO     | zombie collector waiting for pid 753409
[2025-07-27 13:27:57] 2025-07-27 17:27:24,946 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 13:27:57] 2025-07-27 17:27:24,946 | INFO     | collected zombie processes
[2025-07-27 13:27:57] 2025-07-27 17:27:24,946 | INFO     | will attempt to kill all subprocesses of pid=753409
[2025-07-27 13:27:57] 2025-07-27 17:27:25,202 | INFO     | process IDs to be killed: [753409] (in reverse order)
[2025-07-27 13:27:57] 2025-07-27 17:27:25,311 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 13:27:57] 2025-07-27 17:27:25,312 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 13:27:57] 2025-07-27 17:27:25,322 | INFO     | did not find any defunct processes belonging to 753409
[2025-07-27 13:27:57] 2025-07-27 17:27:25,333 | INFO     | did not find any defunct processes belonging to 753409
[2025-07-27 13:27:57] 2025-07-27 17:27:25,333 | INFO     | ready for new job
[2025-07-27 13:27:57] 2025-07-27 17:27:25,334 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 13:27:57] 2025-07-27 17:27:25,335 | INFO     | ***************************************
[2025-07-27 13:27:57] 2025-07-27 17:27:25,335 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 13:27:57] 2025-07-27 17:27:25,335 | INFO     | ***************************************
[2025-07-27 13:27:57] 2025-07-27 17:27:25,336 | INFO     | 
[2025-07-27 13:27:57] 2025-07-27 17:27:25,339 | INFO     | architecture information:
[2025-07-27 13:27:57] 2025-07-27 17:27:25,339 | INFO     | executing command: cat /etc/os-release
[2025-07-27 13:27:57] 2025-07-27 17:27:25,354 | INFO     | cat /etc/os-release:
[2025-07-27 13:27:57] NAME="CentOS Linux"
[2025-07-27 13:27:57] VERSION="7 (Core)"
[2025-07-27 13:27:57] ID="centos"
[2025-07-27 13:27:57] ID_LIKE="rhel fedora"
[2025-07-27 13:27:57] VERSION_ID="7"
[2025-07-27 13:27:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 13:27:57] ANSI_COLOR="0;31"
[2025-07-27 13:27:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 13:27:57] HOME_URL="https://www.centos.org/"
[2025-07-27 13:27:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 13:27:57] 
[2025-07-27 13:27:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 13:27:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 13:27:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 13:27:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 13:27:57] 
[2025-07-27 13:27:57] 2025-07-27 17:27:25,355 | INFO     | ***************************************
[2025-07-27 13:27:57] 2025-07-27 17:27:25,857 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 13:27:57] 2025-07-27 17:27:25,877 | INFO     | sufficient remaining disk space (75515297792 B)
[2025-07-27 13:27:57] 2025-07-27 17:27:25,877 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 13:27:57] 2025-07-27 17:27:25,877 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 13:27:57] 2025-07-27 17:27:25,877 | INFO     | update_server=False
[2025-07-27 13:27:57] 2025-07-27 17:27:25,877 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 13:27:57] 2025-07-27 17:27:25,877 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 13:27:57] 2025-07-27 17:27:26,115 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 13:27:57] 2025-07-27 17:27:26,115 | INFO     | aborting loop
[2025-07-27 13:27:57] 2025-07-27 17:27:26,157 | INFO     | all payload control threads have been joined
[2025-07-27 13:27:57] 2025-07-27 17:27:26,472 | INFO     | all data control threads have been joined
[2025-07-27 13:27:57] 2025-07-27 17:27:26,882 | INFO     | [job] retrieve thread has finished
[2025-07-27 13:27:57] 2025-07-27 17:27:26,883 | INFO     | [job] queue monitor thread has finished
[2025-07-27 13:27:57] 2025-07-27 17:27:26,990 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 13:27:57] 2025-07-27 17:27:26,994 | INFO     | all job control threads have been joined
[2025-07-27 13:27:57] 2025-07-27 17:27:27,120 | INFO     | [job] job monitor thread has finished
[2025-07-27 13:27:57] 2025-07-27 17:27:27,163 | INFO     | [payload] control thread has finished
[2025-07-27 13:27:57] 2025-07-27 17:27:27,258 | INFO     | [job] validate thread has finished
[2025-07-27 13:27:57] 2025-07-27 17:27:27,407 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 13:27:57] 2025-07-27 17:27:27,440 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 13:27:57] 2025-07-27 17:27:27,477 | INFO     | [data] control thread has finished
[2025-07-27 13:27:57] 2025-07-27 17:27:27,534 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 13:27:57] 2025-07-27 17:27:27,728 | INFO     | [data] copytool_in thread has finished
[2025-07-27 13:27:57] 2025-07-27 17:27:27,780 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 13:27:57] 2025-07-27 17:27:27,999 | INFO     | [job] control thread has finished
[2025-07-27 13:27:57] 2025-07-27 17:27:28,218 | INFO     | [payload] failed_post thread has finished
[2025-07-27 13:27:57] 2025-07-27 17:27:28,387 | INFO     | [payload] validate_post thread has finished
[2025-07-27 13:27:57] 2025-07-27 17:27:28,995 | INFO     | [data] copytool_out thread has finished
[2025-07-27 13:27:57] 2025-07-27 17:27:31,542 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 13:27:57] 2025-07-27 17:27:36,280 | INFO     | job.realtimelogging is not enabled
[2025-07-27 13:27:57] 2025-07-27 17:27:37,285 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 13:27:57] 2025-07-27 17:27:37,519 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140363862140736)>', '<ExcThread(monitor, started 140363138324224)>']
[2025-07-27 13:27:57] 2025-07-27 17:27:42,544 | INFO     | all workflow threads have been joined
[2025-07-27 13:27:57] 2025-07-27 17:27:42,544 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 13:27:57] 2025-07-27 17:27:42,545 | INFO     | traces error code: 0
[2025-07-27 13:27:57] 2025-07-27 17:27:42,545 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 13:27:57] 2025-07-27 17:27:56,714 | INFO     | PID=744107 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 13:27:57] 2025-07-27 17:27:56,715 | INFO     | .. there are 12 such processes running
[2025-07-27 13:27:57] 2025-07-27 17:27:56,715 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 13:27:57] 2025-07-27 17:27:56,715 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 13:27:57] 2025-07-27 17:27:56,715 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 13:27:57] 2025-07-27 17:27:56,715 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 13:27:57] 2025-07-27 17:27:56,715 | INFO     | [monitor] control thread has ended
[2025-07-27 13:27:57] 2025-07-27 17:27:56,893 [wrapper] ==== pilot stdout END ====
[2025-07-27 13:27:57] 2025-07-27 17:27:56,899 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 13:27:57] 2025-07-27 17:27:56,902 [wrapper] pilotpid: 744107
[2025-07-27 13:27:57] 2025-07-27 17:27:56,905 [wrapper] Pilot exit status: 0
[2025-07-27 13:27:57] 2025-07-27 17:27:56,927 [wrapper] pandaids: 6747376592
[2025-07-27 13:27:57] 2025-07-27 17:27:56,996 [wrapper] cleanup supervisor_pilot 1039469 744108
[2025-07-27 13:27:57] 2025-07-27 17:27:57,001 [wrapper] Test setup, not cleaning
[2025-07-27 13:27:57] 2025-07-27 17:27:57,004 [wrapper] apfmon messages muted
[2025-07-27 13:27:57] 2025-07-27 17:27:57,008 [wrapper] ==== wrapper stdout END ====
[2025-07-27 13:27:57] 2025-07-27 17:27:57,015 [wrapper] ==== wrapper stderr END ====
[2025-07-27 13:27:57]  *** Error codes and diagnostics ***
[2025-07-27 13:27:57]     "exeErrorCode": 0,
[2025-07-27 13:27:57]     "exeErrorDiag": "",
[2025-07-27 13:27:57]     "pilotErrorCode": 0,
[2025-07-27 13:27:57]     "pilotErrorDiag": "",
[2025-07-27 13:27:57]  *** Listing of results directory ***
[2025-07-27 13:27:57] total 359944
[2025-07-27 13:27:57] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 07:42 pilot3.tar.gz
[2025-07-27 13:27:57] -rwx------. 1 boincer umatlas     36292 Jul 27 07:51 runpilot2-wrapper.sh
[2025-07-27 13:27:57] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 07:51 queuedata.json
[2025-07-27 13:27:57] -rw-r--r--. 1 boincer umatlas       100 Jul 27 11:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 13:27:57] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 11:53 run_atlas
[2025-07-27 13:27:57] -rw-r--r--. 1 boincer umatlas       105 Jul 27 11:53 job.xml
[2025-07-27 13:27:57] -rw-r--r--. 2 boincer umatlas 146053785 Jul 27 11:53 EVNT.45743347._002653.pool.root.1
[2025-07-27 13:27:57] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 11:53 start_atlas.sh
[2025-07-27 13:27:57] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 11:53 shared
[2025-07-27 13:27:57] -rw-r--r--. 2 boincer umatlas    542897 Jul 27 11:53 input.tar.gz
[2025-07-27 13:27:57] -rw-r--r--. 1 boincer umatlas         0 Jul 27 11:53 boinc_lockfile
[2025-07-27 13:27:57] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 11:53 pandaJob.out
[2025-07-27 13:27:57] -rw-------. 1 boincer umatlas    980101 Jul 27 11:54 agis_schedconf.cvmfs.json
[2025-07-27 13:27:57] -rw-------. 1 boincer umatlas   1593052 Jul 27 11:54 agis_ddmendpoints.agis.ALL.json
[2025-07-27 13:27:57] drwx------. 4 boincer umatlas      4096 Jul 27 11:54 pilot3
[2025-07-27 13:27:57] -rw-r--r--. 1 boincer umatlas      6841 Jul 27 13:19 init_data.xml
[2025-07-27 13:27:57] -rw-------. 1 boincer umatlas 216837883 Jul 27 13:26 HITS.45743349._047801.pool.root.1
[2025-07-27 13:27:57] -rw-r--r--. 1 boincer umatlas       530 Jul 27 13:26 boinc_task_state.xml
[2025-07-27 13:27:57] -rw-------. 1 boincer umatlas        95 Jul 27 13:27 pilot_heartbeat.json
[2025-07-27 13:27:57] -rw-------. 1 boincer umatlas      1055 Jul 27 13:27 memory_monitor_summary.json
[2025-07-27 13:27:57] -rw-------. 1 boincer umatlas    372076 Jul 27 13:27 log.45743349._047801.job.log.tgz.1
[2025-07-27 13:27:57] -rw-------. 1 boincer umatlas      7830 Jul 27 13:27 heartbeat.json
[2025-07-27 13:27:57] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 13:27 boinc_mmap_file
[2025-07-27 13:27:57] -rw-r--r--. 1 boincer umatlas        27 Jul 27 13:27 wrapper_checkpoint.txt
[2025-07-27 13:27:57] -rw-------. 1 boincer umatlas       822 Jul 27 13:27 pilotlog.txt
[2025-07-27 13:27:57] -rw-------. 1 boincer umatlas    539287 Jul 27 13:27 log.45743349._047801.job.log.1
[2025-07-27 13:27:57] -rw-------. 1 boincer umatlas       357 Jul 27 13:27 output.list
[2025-07-27 13:27:57] -rw-r--r--. 1 boincer umatlas       620 Jul 27 13:27 runtime_log
[2025-07-27 13:27:57] -rw-------. 1 boincer umatlas    931840 Jul 27 13:27 result.tar.gz
[2025-07-27 13:27:57] -rw-r--r--. 1 boincer umatlas      8672 Jul 27 13:27 runtime_log.err
[2025-07-27 13:27:57] -rw-------. 1 boincer umatlas       657 Jul 27 13:27 CxoMDmI5E07n9Rq4apOajLDm4fhM0noT9bVof3QYDmFV2KDmoFNSln.diag
[2025-07-27 13:27:57] -rw-r--r--. 1 boincer umatlas     21946 Jul 27 13:27 stderr.txt
[2025-07-27 13:27:57] HITS file was successfully produced:
[2025-07-27 13:27:57] -rw-------. 1 boincer umatlas 216837883 Jul 27 13:26 shared/HITS.pool.root.1
[2025-07-27 13:27:57]  *** Contents of shared directory: ***
[2025-07-27 13:27:57] total 355848
[2025-07-27 13:27:57] -rw-r--r--. 2 boincer umatlas 146053785 Jul 27 11:53 ATLAS.root_0
[2025-07-27 13:27:57] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 11:53 start_atlas.sh
[2025-07-27 13:27:57] -rw-r--r--. 2 boincer umatlas    542897 Jul 27 11:53 input.tar.gz
[2025-07-27 13:27:57] -rw-------. 1 boincer umatlas 216837883 Jul 27 13:26 HITS.pool.root.1
[2025-07-27 13:27:57] -rw-------. 1 boincer umatlas    931840 Jul 27 13:27 result.tar.gz
13:27:58 (740479): run_atlas exited; CPU time 56990.238025
13:27:58 (740479): called boinc_finish(0)

</stderr_txt>
]]>

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