Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
09:41:09 (26458): wrapper (7.7.26015): starting
09:41:09 (26458): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 09:41:09] Arguments: --nthreads 12
[2025-07-27 09:41:09] Threads: 12
[2025-07-27 09:41:09] Checking for CVMFS
[2025-07-27 09:41:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 09:41:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 09:41:10] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 09:41:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 09:41:10] 2.11.2.0 2914 112075 92928 148813 2 57 15532428 20275200 1 130560 0 37798822 99.969 9728509 10662 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 09:41:10] CVMFS is ok
[2025-07-27 09:41:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 09:41:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 09:41:10] Further information can be found at the LHC@home message board.
[2025-07-27 09:41:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 09:41:10] Checking for apptainer binary...
[2025-07-27 09:41:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 09:41:10] Running /usr/bin/apptainer --version
[2025-07-27 09:41:10] apptainer version 1.3.2-1.el7
[2025-07-27 09:41:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 09:41:11] c-205-5.aglt2.org
[2025-07-27 09:41:11] apptainer works
[2025-07-27 09:41:11] Set ATHENA_PROC_NUMBER=12
[2025-07-27 09:41:11] Set ATHENA_CORE_NUMBER=12
[2025-07-27 09:41:11] Starting ATLAS job with PandaID=6746590540
[2025-07-27 09:41:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 11:09:39]  *** The last 200 lines of the pilot log: ***
[2025-07-27 11:09:39]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-07-27 11:09:39]  is_altstaged=None
[2025-07-27 11:09:39]  is_tar=False
[2025-07-27 11:09:39]  lfn=log.45759399._000028.job.log.tgz.1
[2025-07-27 11:09:39]  mtime=0
[2025-07-27 11:09:39]  protocol_id=None
[2025-07-27 11:09:39]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 11:09:39]  replicas=None
[2025-07-27 11:09:39]  scope=mc23_13p6TeV
[2025-07-27 11:09:39]  status=None
[2025-07-27 11:09:39]  status_code=0
[2025-07-27 11:09:39]  storage_token=
[2025-07-27 11:09:39]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6746590540/log.45759399._000028.job.log.tgz.1
[2025-07-27 11:09:39]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6c/19/log.45759399._000028.job.log.tgz.1
[2025-07-27 11:09:39]  workdir=None
[2025-07-27 11:09:39] ]
[2025-07-27 11:09:39] 2025-07-27 15:09:00,901 | INFO     | transferring file log.45759399._000028.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6746590540/log.45759399._000028.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 11:09:39] 2025-07-27 15:09:00,901 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6746590540/log.45759399._000028.job.log.tgz.1 /tmp/boinchome/slots/0/log.45759399._000028.job
[2025-07-27 11:09:39] 2025-07-27 15:09:00,924 | INFO     | adding to output.list: log.45759399._000028.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6c/19/log.45759399._000028.job.log.tg
[2025-07-27 11:09:39] 2025-07-27 15:09:00,925 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 11:09:39] 2025-07-27 15:09:00,925 | INFO     | summary of transferred files:
[2025-07-27 11:09:39] 2025-07-27 15:09:00,925 | INFO     |  -- lfn=log.45759399._000028.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 11:09:39] 2025-07-27 15:09:00,925 | INFO     | stage-out finished correctly
[2025-07-27 11:09:39] 2025-07-27 15:09:01,280 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 11:09:39] 2025-07-27 15:09:01,732 | INFO     | job 6746590540 has state=finished
[2025-07-27 11:09:39] 2025-07-27 15:09:01,733 | INFO     | preparing for final server update for job 6746590540 in state='finished'
[2025-07-27 11:09:39] 2025-07-27 15:09:01,733 | INFO     | this job has now completed (state=finished)
[2025-07-27 11:09:39] 2025-07-27 15:09:01,733 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 11:09:39] 2025-07-27 15:09:01,733 | INFO     | log transfer has been attempted: DONE
[2025-07-27 11:09:39] 2025-07-27 15:09:01,734 | INFO     | job 6746590540 has finished - writing final server update
[2025-07-27 11:09:39] 2025-07-27 15:09:01,734 | INFO     | total number of processed events: 400 (read)
[2025-07-27 11:09:39] 2025-07-27 15:09:01,735 | INFO     | executing command: lscpu
[2025-07-27 11:09:39] 2025-07-27 15:09:01,761 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 11:09:39] 2025-07-27 15:09:02,394 | INFO     | monitor loop #393: job 0:6746590540 is in state 'finished'
[2025-07-27 11:09:39] 2025-07-27 15:09:02,394 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 11:09:39] 2025-07-27 15:09:04,617 | INFO     | PID=30056 has CPU usage=6.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-27 11:09:39] 2025-07-27 15:09:04,897 | INFO     | monitor loop #394: job 0:6746590540 is in state 'finished'
[2025-07-27 11:09:39] 2025-07-27 15:09:04,897 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 11:09:39] 2025-07-27 15:09:06,634 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-27 11:09:39] 2025-07-27 15:09:06,638 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1740.1666666666667
[2025-07-27 11:09:39] 2025-07-27 15:09:06,640 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6746590540/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 11:09:39] 2025-07-27 15:09:06,641 | INFO     | extracted standard info from prmon json
[2025-07-27 11:09:39] 2025-07-27 15:09:06,641 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 11:09:39] 2025-07-27 15:09:06,641 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 11:09:39] 2025-07-27 15:09:06,641 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 11:09:39] 2025-07-27 15:09:06,642 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 11:09:39] 2025-07-27 15:09:06,644 | INFO     | fitting pss+swap vs Time
[2025-07-27 11:09:39] 2025-07-27 15:09:06,644 | INFO     | sum of square deviations: 152858680.0
[2025-07-27 11:09:39] 2025-07-27 15:09:06,645 | INFO     | sum of deviations: -4119778227.9999995
[2025-07-27 11:09:39] 2025-07-27 15:09:06,645 | INFO     | mean x: 1753626400.0
[2025-07-27 11:09:39] 2025-07-27 15:09:06,645 | INFO     | mean y: 2720639.9873417723
[2025-07-27 11:09:39] 2025-07-27 15:09:06,645 | INFO     | -- intersect: 47265668761.52037
[2025-07-27 11:09:39] 2025-07-27 15:09:06,645 | INFO     | intersect: 47265668761.52037
[2025-07-27 11:09:39] 2025-07-27 15:09:06,645 | INFO     | chi2: 0.11833887529151296
[2025-07-27 11:09:39] 2025-07-27 15:09:06,646 | INFO     | -- intersect: 47265668761.52037
[2025-07-27 11:09:39] 2025-07-27 15:09:06,646 | INFO     | current memory leak: -26.95 B/s (using 79 data points, chi2=0.12)
[2025-07-27 11:09:39] 2025-07-27 15:09:06,646 | INFO     | could have reported an average CPU frequency of 2050 MHz (6 samples)
[2025-07-27 11:09:39] 2025-07-27 15:09:06,646 | INFO     | ..............................
[2025-07-27 11:09:39] 2025-07-27 15:09:06,646 | INFO     | . Timing measurements:
[2025-07-27 11:09:39] 2025-07-27 15:09:06,647 | INFO     | . get job = 0 s
[2025-07-27 11:09:39] 2025-07-27 15:09:06,647 | INFO     | . initial setup = 2 s
[2025-07-27 11:09:39] 2025-07-27 15:09:06,647 | INFO     | . payload setup = 9 s
[2025-07-27 11:09:39] 2025-07-27 15:09:06,647 | INFO     | . stage-in = 0 s
[2025-07-27 11:09:39] 2025-07-27 15:09:06,647 | INFO     | . payload execution = 5224 s
[2025-07-27 11:09:39] 2025-07-27 15:09:06,647 | INFO     | . stage-out = 0 s
[2025-07-27 11:09:39] 2025-07-27 15:09:06,647 | INFO     | . log creation = 0 s
[2025-07-27 11:09:39] 2025-07-27 15:09:06,648 | INFO     | ..............................
[2025-07-27 11:09:39] 2025-07-27 15:09:07,151 | INFO     | 
[2025-07-27 11:09:39] 2025-07-27 15:09:07,151 | INFO     | job summary report
[2025-07-27 11:09:39] 2025-07-27 15:09:07,151 | INFO     | --------------------------------------------------
[2025-07-27 11:09:39] 2025-07-27 15:09:07,152 | INFO     | PanDA job id: 6746590540
[2025-07-27 11:09:39] 2025-07-27 15:09:07,152 | INFO     | task id: 45759399
[2025-07-27 11:09:39] 2025-07-27 15:09:07,152 | INFO     | errors: (none)
[2025-07-27 11:09:39] 2025-07-27 15:09:07,152 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 11:09:39] 2025-07-27 15:09:07,152 | INFO     | pilot state: finished 
[2025-07-27 11:09:39] 2025-07-27 15:09:07,152 | INFO     | transexitcode: 0
[2025-07-27 11:09:39] 2025-07-27 15:09:07,152 | INFO     | exeerrorcode: 0
[2025-07-27 11:09:39] 2025-07-27 15:09:07,153 | INFO     | exeerrordiag: 
[2025-07-27 11:09:39] 2025-07-27 15:09:07,153 | INFO     | exitcode: 0
[2025-07-27 11:09:39] 2025-07-27 15:09:07,153 | INFO     | exitmsg: OK
[2025-07-27 11:09:39] 2025-07-27 15:09:07,153 | INFO     | cpuconsumptiontime: 56141 s
[2025-07-27 11:09:39] 2025-07-27 15:09:07,153 | INFO     | nevents: 400
[2025-07-27 11:09:39] 2025-07-27 15:09:07,153 | INFO     | neventsw: 0
[2025-07-27 11:09:39] 2025-07-27 15:09:07,154 | INFO     | pid: 4216
[2025-07-27 11:09:39] 2025-07-27 15:09:07,154 | INFO     | pgrp: 4216
[2025-07-27 11:09:39] 2025-07-27 15:09:07,154 | INFO     | corecount: 12
[2025-07-27 11:09:39] 2025-07-27 15:09:07,154 | INFO     | event service: False
[2025-07-27 11:09:39] 2025-07-27 15:09:07,154 | INFO     | sizes: {0: 2397228, 1: 2397483, 6: 2397745, 12: 2397773, 5238: 2424217, 5240: 2433399, 5246: 2433537}
[2025-07-27 11:09:39] 2025-07-27 15:09:07,154 | INFO     | --------------------------------------------------
[2025-07-27 11:09:39] 2025-07-27 15:09:07,155 | INFO     | 
[2025-07-27 11:09:39] 2025-07-27 15:09:07,155 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 11:09:39] 2025-07-27 15:09:07,179 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 11:09:39] 2025-07-27 15:09:07,179 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 11:09:39] 2025-07-27 15:09:07,179 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 11:09:39] 2025-07-27 15:09:07,179 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 11:09:39] 2025-07-27 15:09:07,179 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 11:09:39] 2025-07-27 15:09:07,180 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 11:09:39] 2025-07-27 15:09:07,180 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 11:09:39] 2025-07-27 15:09:07,180 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 11:09:39] 2025-07-27 15:09:07,180 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 11:09:39] 2025-07-27 15:09:07,180 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 11:09:39] 2025-07-27 15:09:07,180 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 11:09:39] 2025-07-27 15:09:07,181 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 11:09:39] 2025-07-27 15:09:07,181 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 11:09:39] 2025-07-27 15:09:07,181 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 11:09:39] 2025-07-27 15:09:07,181 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 11:09:39] 2025-07-27 15:09:07,181 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 11:09:39] 2025-07-27 15:09:07,181 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 11:09:39] 2025-07-27 15:09:07,182 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 11:09:39] 2025-07-27 15:09:07,182 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 11:09:39] 2025-07-27 15:09:07,182 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 11:09:39] 2025-07-27 15:09:07,182 | INFO     | job 6746590540 has completed (purged errors)
[2025-07-27 11:09:39] 2025-07-27 15:09:07,182 | INFO     | overall cleanup function is called
[2025-07-27 11:09:39] 2025-07-27 15:09:08,191 | INFO     | --- collectZombieJob: --- 10, [4216]
[2025-07-27 11:09:39] 2025-07-27 15:09:08,191 | INFO     | zombie collector waiting for pid 4216
[2025-07-27 11:09:39] 2025-07-27 15:09:08,191 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 11:09:39] 2025-07-27 15:09:08,191 | INFO     | collected zombie processes
[2025-07-27 11:09:39] 2025-07-27 15:09:08,191 | INFO     | will attempt to kill all subprocesses of pid=4216
[2025-07-27 11:09:39] 2025-07-27 15:09:08,285 | INFO     | process IDs to be killed: [4216] (in reverse order)
[2025-07-27 11:09:39] 2025-07-27 15:09:08,336 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 11:09:39] 2025-07-27 15:09:08,337 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 11:09:39] 2025-07-27 15:09:08,340 | INFO     | did not find any defunct processes belonging to 4216
[2025-07-27 11:09:39] 2025-07-27 15:09:08,342 | INFO     | did not find any defunct processes belonging to 4216
[2025-07-27 11:09:39] 2025-07-27 15:09:08,342 | INFO     | ready for new job
[2025-07-27 11:09:39] 2025-07-27 15:09:08,342 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 11:09:39] 2025-07-27 15:09:08,343 | INFO     | ***************************************
[2025-07-27 11:09:39] 2025-07-27 15:09:08,343 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 11:09:39] 2025-07-27 15:09:08,343 | INFO     | ***************************************
[2025-07-27 11:09:39] 2025-07-27 15:09:08,343 | INFO     | 
[2025-07-27 11:09:39] 2025-07-27 15:09:08,344 | INFO     | architecture information:
[2025-07-27 11:09:39] 2025-07-27 15:09:08,344 | INFO     | executing command: cat /etc/os-release
[2025-07-27 11:09:39] 2025-07-27 15:09:08,360 | INFO     | cat /etc/os-release:
[2025-07-27 11:09:39] NAME="CentOS Linux"
[2025-07-27 11:09:39] VERSION="7 (Core)"
[2025-07-27 11:09:39] ID="centos"
[2025-07-27 11:09:39] ID_LIKE="rhel fedora"
[2025-07-27 11:09:39] VERSION_ID="7"
[2025-07-27 11:09:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 11:09:39] ANSI_COLOR="0;31"
[2025-07-27 11:09:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 11:09:39] HOME_URL="https://www.centos.org/"
[2025-07-27 11:09:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 11:09:39] 
[2025-07-27 11:09:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 11:09:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 11:09:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 11:09:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 11:09:39] 
[2025-07-27 11:09:39] 2025-07-27 15:09:08,361 | INFO     | ***************************************
[2025-07-27 11:09:39] 2025-07-27 15:09:08,864 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 11:09:39] 2025-07-27 15:09:08,881 | INFO     | sufficient remaining disk space (29361176576 B)
[2025-07-27 11:09:39] 2025-07-27 15:09:08,882 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 11:09:39] 2025-07-27 15:09:08,882 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 11:09:39] 2025-07-27 15:09:08,882 | INFO     | update_server=False
[2025-07-27 11:09:39] 2025-07-27 15:09:08,882 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 11:09:39] 2025-07-27 15:09:08,883 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 11:09:39] 2025-07-27 15:09:08,883 | INFO     | aborting loop
[2025-07-27 11:09:39] 2025-07-27 15:09:09,023 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 11:09:39] 2025-07-27 15:09:09,830 | INFO     | all data control threads have been joined
[2025-07-27 11:09:39] 2025-07-27 15:09:09,887 | INFO     | [job] retrieve thread has finished
[2025-07-27 11:09:39] 2025-07-27 15:09:09,889 | INFO     | [job] job monitor thread has finished
[2025-07-27 11:09:39] 2025-07-27 15:09:09,917 | INFO     | [payload] validate_post thread has finished
[2025-07-27 11:09:39] 2025-07-27 15:09:09,960 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 11:09:39] 2025-07-27 15:09:10,197 | INFO     | all payload control threads have been joined
[2025-07-27 11:09:39] 2025-07-27 15:09:10,198 | INFO     | all job control threads have been joined
[2025-07-27 11:09:39] 2025-07-27 15:09:10,253 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 11:09:39] 2025-07-27 15:09:10,438 | INFO     | [data] copytool_in thread has finished
[2025-07-27 11:09:39] 2025-07-27 15:09:10,565 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 11:09:39] 2025-07-27 15:09:10,815 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 11:09:39] 2025-07-27 15:09:10,836 | INFO     | [data] control thread has finished
[2025-07-27 11:09:39] 2025-07-27 15:09:10,955 | INFO     | [payload] failed_post thread has finished
[2025-07-27 11:09:39] 2025-07-27 15:09:11,029 | INFO     | [data] copytool_out thread has finished
[2025-07-27 11:09:39] 2025-07-27 15:09:11,125 | INFO     | [job] validate thread has finished
[2025-07-27 11:09:39] 2025-07-27 15:09:11,202 | INFO     | [payload] control thread has finished
[2025-07-27 11:09:39] 2025-07-27 15:09:11,203 | INFO     | [job] control thread has finished
[2025-07-27 11:09:39] 2025-07-27 15:09:11,740 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 11:09:39] 2025-07-27 15:09:11,872 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 11:09:39] 2025-07-27 15:09:12,743 | INFO     | [job] queue monitor thread has finished
[2025-07-27 11:09:39] 2025-07-27 15:09:15,877 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 11:09:39] 2025-07-27 15:09:16,227 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140442960365376)>', '<ExcThread(monitor, started 140442519717632)>']
[2025-07-27 11:09:39] 2025-07-27 15:09:21,253 | INFO     | all workflow threads have been joined
[2025-07-27 11:09:39] 2025-07-27 15:09:21,272 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 11:09:39] 2025-07-27 15:09:21,273 | INFO     | traces error code: 0
[2025-07-27 11:09:39] 2025-07-27 15:09:21,273 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 11:09:39] 2025-07-27 15:09:38,811 | INFO     | PID=30056 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-27 11:09:39] 2025-07-27 15:09:38,812 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 11:09:39] 2025-07-27 15:09:38,812 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 11:09:39] 2025-07-27 15:09:38,813 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 11:09:39] 2025-07-27 15:09:38,813 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 11:09:39] 2025-07-27 15:09:38,813 | INFO     | [monitor] control thread has ended
[2025-07-27 11:09:39] 2025-07-27 15:09:38,912 [wrapper] ==== pilot stdout END ====
[2025-07-27 11:09:39] 2025-07-27 15:09:38,916 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 11:09:39] 2025-07-27 15:09:38,919 [wrapper] pilotpid: 30056
[2025-07-27 11:09:39] 2025-07-27 15:09:38,923 [wrapper] Pilot exit status: 0
[2025-07-27 11:09:39] 2025-07-27 15:09:38,938 [wrapper] pandaids: 6746590540
[2025-07-27 11:09:39] 2025-07-27 15:09:38,980 [wrapper] cleanup supervisor_pilot 25018 30057
[2025-07-27 11:09:39] 2025-07-27 15:09:38,983 [wrapper] Test setup, not cleaning
[2025-07-27 11:09:39] 2025-07-27 15:09:38,988 [wrapper] apfmon messages muted
[2025-07-27 11:09:39] 2025-07-27 15:09:38,991 [wrapper] ==== wrapper stdout END ====
[2025-07-27 11:09:39] 2025-07-27 15:09:38,995 [wrapper] ==== wrapper stderr END ====
[2025-07-27 11:09:39]  *** Error codes and diagnostics ***
[2025-07-27 11:09:39]     "exeErrorCode": 0,
[2025-07-27 11:09:39]     "exeErrorDiag": "",
[2025-07-27 11:09:39]     "pilotErrorCode": 0,
[2025-07-27 11:09:39]     "pilotErrorDiag": "",
[2025-07-27 11:09:39]  *** Listing of results directory ***
[2025-07-27 11:09:39] total 405928
[2025-07-27 11:09:39] -rw-r--r-- 1 boincer umatlas    530466 Jul 27 04:09 pilot3.tar.gz
[2025-07-27 11:09:39] -rw-r--r-- 1 boincer umatlas      5112 Jul 27 04:23 queuedata.json
[2025-07-27 11:09:39] -rwx------ 1 boincer umatlas     36292 Jul 27 04:24 runpilot2-wrapper.sh
[2025-07-27 11:09:39] -rw-r--r-- 1 boincer umatlas       100 Jul 27 09:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 11:09:39] -rwxr-xr-x 1 boincer umatlas      7986 Jul 27 09:41 run_atlas
[2025-07-27 11:09:39] -rw-r--r-- 1 boincer umatlas       105 Jul 27 09:41 job.xml
[2025-07-27 11:09:39] -rw-r--r-- 2 boincer umatlas 242557863 Jul 27 09:41 EVNT.45759395._000002.pool.root.1
[2025-07-27 11:09:39] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 09:41 start_atlas.sh
[2025-07-27 11:09:39] drwxrwx--x 2 boincer umatlas      4096 Jul 27 09:41 shared
[2025-07-27 11:09:39] -rw-r--r-- 2 boincer umatlas    542880 Jul 27 09:41 input.tar.gz
[2025-07-27 11:09:39] -rw-r--r-- 1 boincer umatlas         0 Jul 27 09:41 boinc_lockfile
[2025-07-27 11:09:39] -rw-r--r-- 1 boincer umatlas      2549 Jul 27 09:41 pandaJob.out
[2025-07-27 11:09:39] -rw------- 1 boincer umatlas    980117 Jul 27 09:41 agis_schedconf.cvmfs.json
[2025-07-27 11:09:39] -rw------- 1 boincer umatlas   1593052 Jul 27 09:41 agis_ddmendpoints.agis.ALL.json
[2025-07-27 11:09:39] drwx------ 4 boincer umatlas      4096 Jul 27 09:41 pilot3
[2025-07-27 11:09:39] -rw-r--r-- 1 boincer umatlas      5866 Jul 27 11:02 init_data.xml
[2025-07-27 11:09:39] -rw------- 1 boincer umatlas 167529576 Jul 27 11:08 HITS.45759399._000028.pool.root.1
[2025-07-27 11:09:39] -rw-r--r-- 1 boincer umatlas       529 Jul 27 11:08 boinc_task_state.xml
[2025-07-27 11:09:39] -rw------- 1 boincer umatlas      1048 Jul 27 11:08 memory_monitor_summary.json
[2025-07-27 11:09:39] -rw------- 1 boincer umatlas    356411 Jul 27 11:09 log.45759399._000028.job.log.tgz.1
[2025-07-27 11:09:39] -rw------- 1 boincer umatlas      7841 Jul 27 11:09 heartbeat.json
[2025-07-27 11:09:39] -rw-r--r-- 1 boincer umatlas        27 Jul 27 11:09 wrapper_checkpoint.txt
[2025-07-27 11:09:39] -rw-r--r-- 1 boincer umatlas      8192 Jul 27 11:09 boinc_mmap_file
[2025-07-27 11:09:39] -rw------- 1 boincer umatlas        95 Jul 27 11:09 pilot_heartbeat.json
[2025-07-27 11:09:39] -rw------- 1 boincer umatlas       745 Jul 27 11:09 pilotlog.txt
[2025-07-27 11:09:39] -rw------- 1 boincer umatlas    496717 Jul 27 11:09 log.45759399._000028.job.log.1
[2025-07-27 11:09:39] -rw------- 1 boincer umatlas       357 Jul 27 11:09 output.list
[2025-07-27 11:09:39] -rw-r--r-- 1 boincer umatlas       620 Jul 27 11:09 runtime_log
[2025-07-27 11:09:39] -rw------- 1 boincer umatlas    870400 Jul 27 11:09 result.tar.gz
[2025-07-27 11:09:39] -rw-r--r-- 1 boincer umatlas      8657 Jul 27 11:09 runtime_log.err
[2025-07-27 11:09:39] -rw------- 1 boincer umatlas       658 Jul 27 11:09 CTsLDm0qB07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmvlULDmptxHnm.diag
[2025-07-27 11:09:39] -rw-r--r-- 1 boincer umatlas     21542 Jul 27 11:09 stderr.txt
[2025-07-27 11:09:39] HITS file was successfully produced:
[2025-07-27 11:09:39] -rw------- 1 boincer umatlas 167529576 Jul 27 11:08 shared/HITS.pool.root.1
[2025-07-27 11:09:39]  *** Contents of shared directory: ***
[2025-07-27 11:09:39] total 401884
[2025-07-27 11:09:39] -rw-r--r-- 2 boincer umatlas 242557863 Jul 27 09:41 ATLAS.root_0
[2025-07-27 11:09:39] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 09:41 start_atlas.sh
[2025-07-27 11:09:39] -rw-r--r-- 2 boincer umatlas    542880 Jul 27 09:41 input.tar.gz
[2025-07-27 11:09:39] -rw------- 1 boincer umatlas 167529576 Jul 27 11:08 HITS.pool.root.1
[2025-07-27 11:09:39] -rw------- 1 boincer umatlas    870400 Jul 27 11:09 result.tar.gz
11:09:40 (26458): run_atlas exited; CPU time 56101.230569
11:09:40 (26458): called boinc_finish(0)

</stderr_txt>
]]>

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