Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
09:29:19 (28579): wrapper (7.7.26015): starting
09:29:19 (28579): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 09:29:19] Arguments: --nthreads 12
[2025-07-27 09:29:19] Threads: 12
[2025-07-27 09:29:19] Checking for CVMFS
[2025-07-27 09:29:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 09:29:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 09:29:20] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 09:29:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 09:29:20] 2.11.2.0 25590 12744 79648 148813 1 57 14742646 20275201 1 130560 0 7153918 99.989 435736 42010 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 09:29:20] CVMFS is ok
[2025-07-27 09:29:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 09:29:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 09:29:20] Further information can be found at the LHC@home message board.
[2025-07-27 09:29:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 09:29:20] Checking for apptainer binary...
[2025-07-27 09:29:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 09:29:20] Running /usr/bin/apptainer --version
[2025-07-27 09:29:20] apptainer version 1.3.2-1.el7
[2025-07-27 09:29:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 09:29:21] c-205-24.aglt2.org
[2025-07-27 09:29:21] apptainer works
[2025-07-27 09:29:21] Set ATHENA_PROC_NUMBER=12
[2025-07-27 09:29:21] Set ATHENA_CORE_NUMBER=12
[2025-07-27 09:29:21] Starting ATLAS job with PandaID=6746473230
[2025-07-27 09:29:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 11:06:23]  *** The last 200 lines of the pilot log: ***
[2025-07-27 11:06:23]  is_tar=False
[2025-07-27 11:06:23]  lfn=log.45759781._000117.job.log.tgz.1
[2025-07-27 11:06:23]  mtime=0
[2025-07-27 11:06:23]  protocol_id=None
[2025-07-27 11:06:23]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 11:06:23]  replicas=None
[2025-07-27 11:06:23]  scope=mc23_13p6TeV
[2025-07-27 11:06:23]  status=None
[2025-07-27 11:06:23]  status_code=0
[2025-07-27 11:06:23]  storage_token=
[2025-07-27 11:06:23]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6746473230/log.45759781._000117.job.log.tgz.1
[2025-07-27 11:06:23]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/df/dd/log.45759781._000117.job.log.tgz.1
[2025-07-27 11:06:23]  workdir=None
[2025-07-27 11:06:23] ]
[2025-07-27 11:06:23] 2025-07-27 15:05:43,038 | INFO     | transferring file log.45759781._000117.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6746473230/log.45759781._000117.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 11:06:23] 2025-07-27 15:05:43,038 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6746473230/log.45759781._000117.job.log.tgz.1 /tmp/boinchome/slots/0/log.45759781._000117.job
[2025-07-27 11:06:23] 2025-07-27 15:05:43,060 | INFO     | adding to output.list: log.45759781._000117.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/df/dd/log.45759781._000117.job.log.tg
[2025-07-27 11:06:23] 2025-07-27 15:05:43,061 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 11:06:23] 2025-07-27 15:05:43,061 | INFO     | summary of transferred files:
[2025-07-27 11:06:23] 2025-07-27 15:05:43,062 | INFO     |  -- lfn=log.45759781._000117.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 11:06:23] 2025-07-27 15:05:43,062 | INFO     | stage-out finished correctly
[2025-07-27 11:06:23] 2025-07-27 15:05:43,531 | INFO     | monitor loop #428: job 0:6746473230 is in state 'finished'
[2025-07-27 11:06:23] 2025-07-27 15:05:43,532 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 11:06:23] 2025-07-27 15:05:45,681 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 11:06:23] 2025-07-27 15:05:45,765 | INFO     | job 6746473230 has state=finished
[2025-07-27 11:06:23] 2025-07-27 15:05:45,765 | INFO     | preparing for final server update for job 6746473230 in state='finished'
[2025-07-27 11:06:23] 2025-07-27 15:05:45,766 | INFO     | this job has now completed (state=finished)
[2025-07-27 11:06:23] 2025-07-27 15:05:45,766 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 11:06:23] 2025-07-27 15:05:45,766 | INFO     | log transfer has been attempted: DONE
[2025-07-27 11:06:23] 2025-07-27 15:05:45,766 | INFO     | job 6746473230 has finished - writing final server update
[2025-07-27 11:06:23] 2025-07-27 15:05:45,767 | INFO     | total number of processed events: 400 (read)
[2025-07-27 11:06:23] 2025-07-27 15:05:45,768 | INFO     | executing command: lscpu
[2025-07-27 11:06:23] 2025-07-27 15:05:45,793 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 11:06:23] 2025-07-27 15:05:46,035 | INFO     | monitor loop #429: job 0:6746473230 is in state 'finished'
[2025-07-27 11:06:23] 2025-07-27 15:05:46,035 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 11:06:23] 2025-07-27 15:05:48,538 | INFO     | monitor loop #430: job 0:6746473230 is in state 'finished'
[2025-07-27 11:06:23] 2025-07-27 15:05:48,538 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 11:06:23] 2025-07-27 15:05:48,542 | INFO     | PID=32168 has CPU usage=6.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-27 11:06:23] 2025-07-27 15:05:50,503 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-27 11:06:23] 2025-07-27 15:05:50,507 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-07-27 11:06:23] 2025-07-27 15:05:50,509 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6746473230/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 11:06:23] 2025-07-27 15:05:50,509 | INFO     | extracted standard info from prmon json
[2025-07-27 11:06:23] 2025-07-27 15:05:50,510 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 11:06:23] 2025-07-27 15:05:50,510 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 11:06:23] 2025-07-27 15:05:50,510 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 11:06:23] 2025-07-27 15:05:50,510 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 11:06:23] 2025-07-27 15:05:50,512 | INFO     | fitting pss+swap vs Time
[2025-07-27 11:06:23] 2025-07-27 15:05:50,512 | INFO     | sum of square deviations: 204163828.0
[2025-07-27 11:06:23] 2025-07-27 15:05:50,512 | INFO     | sum of deviations: -13466995864.0
[2025-07-27 11:06:23] 2025-07-27 15:05:50,513 | INFO     | mean x: 1753625934.0
[2025-07-27 11:06:23] 2025-07-27 15:05:50,513 | INFO     | mean y: 2792132.9540229887
[2025-07-27 11:06:23] 2025-07-27 15:05:50,513 | INFO     | -- intersect: 115674963014.17955
[2025-07-27 11:06:23] 2025-07-27 15:05:50,513 | INFO     | intersect: 115674963014.17955
[2025-07-27 11:06:23] 2025-07-27 15:05:50,513 | INFO     | chi2: 0.0726999056681899
[2025-07-27 11:06:23] 2025-07-27 15:05:50,513 | INFO     | -- intersect: 115674963014.17955
[2025-07-27 11:06:23] 2025-07-27 15:05:50,513 | INFO     | current memory leak: -65.96 B/s (using 87 data points, chi2=0.07)
[2025-07-27 11:06:23] 2025-07-27 15:05:50,514 | INFO     | could have reported an average CPU frequency of 2141 MHz (7 samples)
[2025-07-27 11:06:23] 2025-07-27 15:05:50,514 | INFO     | ..............................
[2025-07-27 11:06:23] 2025-07-27 15:05:50,514 | INFO     | . Timing measurements:
[2025-07-27 11:06:23] 2025-07-27 15:05:50,514 | INFO     | . get job = 0 s
[2025-07-27 11:06:23] 2025-07-27 15:05:50,514 | INFO     | . initial setup = 2 s
[2025-07-27 11:06:23] 2025-07-27 15:05:50,514 | INFO     | . payload setup = 9 s
[2025-07-27 11:06:23] 2025-07-27 15:05:50,514 | INFO     | . stage-in = 0 s
[2025-07-27 11:06:23] 2025-07-27 15:05:50,514 | INFO     | . payload execution = 5737 s
[2025-07-27 11:06:23] 2025-07-27 15:05:50,515 | INFO     | . stage-out = 0 s
[2025-07-27 11:06:23] 2025-07-27 15:05:50,515 | INFO     | . log creation = 0 s
[2025-07-27 11:06:23] 2025-07-27 15:05:50,515 | INFO     | ..............................
[2025-07-27 11:06:23] 2025-07-27 15:05:50,847 | INFO     | 
[2025-07-27 11:06:23] 2025-07-27 15:05:50,848 | INFO     | job summary report
[2025-07-27 11:06:23] 2025-07-27 15:05:50,848 | INFO     | --------------------------------------------------
[2025-07-27 11:06:23] 2025-07-27 15:05:50,848 | INFO     | PanDA job id: 6746473230
[2025-07-27 11:06:23] 2025-07-27 15:05:50,848 | INFO     | task id: 45759781
[2025-07-27 11:06:23] 2025-07-27 15:05:50,848 | INFO     | errors: (none)
[2025-07-27 11:06:23] 2025-07-27 15:05:50,849 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 11:06:23] 2025-07-27 15:05:50,849 | INFO     | pilot state: finished 
[2025-07-27 11:06:23] 2025-07-27 15:05:50,849 | INFO     | transexitcode: 0
[2025-07-27 11:06:23] 2025-07-27 15:05:50,849 | INFO     | exeerrorcode: 0
[2025-07-27 11:06:23] 2025-07-27 15:05:50,849 | INFO     | exeerrordiag: 
[2025-07-27 11:06:23] 2025-07-27 15:05:50,849 | INFO     | exitcode: 0
[2025-07-27 11:06:23] 2025-07-27 15:05:50,850 | INFO     | exitmsg: OK
[2025-07-27 11:06:23] 2025-07-27 15:05:50,850 | INFO     | cpuconsumptiontime: 63809 s
[2025-07-27 11:06:23] 2025-07-27 15:05:50,850 | INFO     | nevents: 400
[2025-07-27 11:06:23] 2025-07-27 15:05:50,850 | INFO     | neventsw: 0
[2025-07-27 11:06:23] 2025-07-27 15:05:50,850 | INFO     | pid: 6289
[2025-07-27 11:06:23] 2025-07-27 15:05:50,850 | INFO     | pgrp: 6289
[2025-07-27 11:06:23] 2025-07-27 15:05:50,850 | INFO     | corecount: 12
[2025-07-27 11:06:23] 2025-07-27 15:05:50,851 | INFO     | event service: False
[2025-07-27 11:06:23] 2025-07-27 15:05:50,851 | INFO     | sizes: {0: 2396637, 1: 2397493, 6: 2397755, 12: 2397783, 5751: 2424535, 5752: 2433533, 5755: 2433717, 5760: 2433911}
[2025-07-27 11:06:23] 2025-07-27 15:05:50,851 | INFO     | --------------------------------------------------
[2025-07-27 11:06:23] 2025-07-27 15:05:50,851 | INFO     | 
[2025-07-27 11:06:23] 2025-07-27 15:05:50,851 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 11:06:23] 2025-07-27 15:05:50,876 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 11:06:23] 2025-07-27 15:05:50,876 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 11:06:23] 2025-07-27 15:05:50,876 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 11:06:23] 2025-07-27 15:05:50,877 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 11:06:23] 2025-07-27 15:05:50,877 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 11:06:23] 2025-07-27 15:05:50,877 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 11:06:23] 2025-07-27 15:05:50,877 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 11:06:23] 2025-07-27 15:05:50,877 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 11:06:23] 2025-07-27 15:05:50,877 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 11:06:23] 2025-07-27 15:05:50,878 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 11:06:23] 2025-07-27 15:05:50,878 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 11:06:23] 2025-07-27 15:05:50,878 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 11:06:23] 2025-07-27 15:05:50,878 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 11:06:23] 2025-07-27 15:05:50,878 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 11:06:23] 2025-07-27 15:05:50,878 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 11:06:23] 2025-07-27 15:05:50,879 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 11:06:23] 2025-07-27 15:05:50,879 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 11:06:23] 2025-07-27 15:05:50,879 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 11:06:23] 2025-07-27 15:05:50,879 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 11:06:23] 2025-07-27 15:05:50,879 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 11:06:23] 2025-07-27 15:05:50,879 | INFO     | job 6746473230 has completed (purged errors)
[2025-07-27 11:06:23] 2025-07-27 15:05:50,880 | INFO     | overall cleanup function is called
[2025-07-27 11:06:23] 2025-07-27 15:05:51,888 | INFO     | --- collectZombieJob: --- 10, [6289]
[2025-07-27 11:06:23] 2025-07-27 15:05:51,888 | INFO     | zombie collector waiting for pid 6289
[2025-07-27 11:06:23] 2025-07-27 15:05:51,888 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 11:06:23] 2025-07-27 15:05:51,888 | INFO     | collected zombie processes
[2025-07-27 11:06:23] 2025-07-27 15:05:51,888 | INFO     | will attempt to kill all subprocesses of pid=6289
[2025-07-27 11:06:23] 2025-07-27 15:05:51,979 | INFO     | process IDs to be killed: [6289] (in reverse order)
[2025-07-27 11:06:23] 2025-07-27 15:05:52,031 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 11:06:23] 2025-07-27 15:05:52,031 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 11:06:23] 2025-07-27 15:05:52,035 | INFO     | did not find any defunct processes belonging to 6289
[2025-07-27 11:06:23] 2025-07-27 15:05:52,038 | INFO     | did not find any defunct processes belonging to 6289
[2025-07-27 11:06:23] 2025-07-27 15:05:52,039 | INFO     | ready for new job
[2025-07-27 11:06:23] 2025-07-27 15:05:52,039 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 11:06:23] 2025-07-27 15:05:52,040 | INFO     | ***************************************
[2025-07-27 11:06:23] 2025-07-27 15:05:52,040 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 11:06:23] 2025-07-27 15:05:52,040 | INFO     | ***************************************
[2025-07-27 11:06:23] 2025-07-27 15:05:52,040 | INFO     | 
[2025-07-27 11:06:23] 2025-07-27 15:05:52,041 | INFO     | architecture information:
[2025-07-27 11:06:23] 2025-07-27 15:05:52,041 | INFO     | executing command: cat /etc/os-release
[2025-07-27 11:06:23] 2025-07-27 15:05:52,057 | INFO     | cat /etc/os-release:
[2025-07-27 11:06:23] NAME="CentOS Linux"
[2025-07-27 11:06:23] VERSION="7 (Core)"
[2025-07-27 11:06:23] ID="centos"
[2025-07-27 11:06:23] ID_LIKE="rhel fedora"
[2025-07-27 11:06:23] VERSION_ID="7"
[2025-07-27 11:06:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 11:06:23] ANSI_COLOR="0;31"
[2025-07-27 11:06:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 11:06:23] HOME_URL="https://www.centos.org/"
[2025-07-27 11:06:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 11:06:23] 
[2025-07-27 11:06:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 11:06:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 11:06:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 11:06:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 11:06:23] 
[2025-07-27 11:06:23] 2025-07-27 15:05:52,057 | INFO     | ***************************************
[2025-07-27 11:06:23] 2025-07-27 15:05:52,560 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 11:06:23] 2025-07-27 15:05:52,576 | INFO     | sufficient remaining disk space (29363273728 B)
[2025-07-27 11:06:23] 2025-07-27 15:05:52,577 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 11:06:23] 2025-07-27 15:05:52,577 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 11:06:23] 2025-07-27 15:05:52,577 | INFO     | update_server=False
[2025-07-27 11:06:23] 2025-07-27 15:05:52,577 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 11:06:23] 2025-07-27 15:05:52,577 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 11:06:23] 2025-07-27 15:05:52,578 | INFO     | aborting loop
[2025-07-27 11:06:23] 2025-07-27 15:05:52,578 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 11:06:23] 2025-07-27 15:05:52,578 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 11:06:23] 2025-07-27 15:05:52,920 | INFO     | all data control threads have been joined
[2025-07-27 11:06:23] 2025-07-27 15:05:53,580 | INFO     | [job] job monitor thread has finished
[2025-07-27 11:06:23] 2025-07-27 15:05:53,583 | INFO     | [job] retrieve thread has finished
[2025-07-27 11:06:23] 2025-07-27 15:05:53,584 | INFO     | [job] queue monitor thread has finished
[2025-07-27 11:06:23] 2025-07-27 15:05:53,594 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 11:06:23] 2025-07-27 15:05:53,595 | INFO     | [job] validate thread has finished
[2025-07-27 11:06:23] 2025-07-27 15:05:53,661 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 11:06:23] 2025-07-27 15:05:53,745 | INFO     | all payload control threads have been joined
[2025-07-27 11:06:23] 2025-07-27 15:05:53,925 | INFO     | [data] control thread has finished
[2025-07-27 11:06:23] 2025-07-27 15:05:53,939 | INFO     | [payload] failed_post thread has finished
[2025-07-27 11:06:23] 2025-07-27 15:05:54,034 | INFO     | all job control threads have been joined
[2025-07-27 11:06:23] 2025-07-27 15:05:54,255 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 11:06:23] 2025-07-27 15:05:54,282 | INFO     | [data] copytool_in thread has finished
[2025-07-27 11:06:23] 2025-07-27 15:05:54,520 | INFO     | [payload] validate_post thread has finished
[2025-07-27 11:06:23] 2025-07-27 15:05:54,660 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 11:06:23] 2025-07-27 15:05:54,750 | INFO     | [payload] control thread has finished
[2025-07-27 11:06:23] 2025-07-27 15:05:55,038 | INFO     | [job] control thread has finished
[2025-07-27 11:06:23] 2025-07-27 15:05:55,041 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 11:06:23] 2025-07-27 15:05:55,661 | INFO     | [data] copytool_out thread has finished
[2025-07-27 11:06:23] 2025-07-27 15:05:56,584 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 11:06:23] 2025-07-27 15:05:58,095 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139867724085056)>', '<ExcThread(monitor, started 139866532730624)>']
[2025-07-27 11:06:23] 2025-07-27 15:06:03,127 | INFO     | all workflow threads have been joined
[2025-07-27 11:06:23] 2025-07-27 15:06:03,138 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 11:06:23] 2025-07-27 15:06:03,140 | INFO     | traces error code: 0
[2025-07-27 11:06:23] 2025-07-27 15:06:03,140 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 11:06:23] 2025-07-27 15:06:22,777 | INFO     | PID=32168 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-27 11:06:23] 2025-07-27 15:06:22,777 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 11:06:23] 2025-07-27 15:06:22,778 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 11:06:23] 2025-07-27 15:06:22,778 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 11:06:23] 2025-07-27 15:06:22,778 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 11:06:23] 2025-07-27 15:06:22,778 | INFO     | [monitor] control thread has ended
[2025-07-27 11:06:23] 2025-07-27 15:06:22,892 [wrapper] ==== pilot stdout END ====
[2025-07-27 11:06:23] 2025-07-27 15:06:22,895 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 11:06:23] 2025-07-27 15:06:22,899 [wrapper] pilotpid: 32168
[2025-07-27 11:06:23] 2025-07-27 15:06:22,903 [wrapper] Pilot exit status: 0
[2025-07-27 11:06:23] 2025-07-27 15:06:22,920 [wrapper] pandaids: 6746473230
[2025-07-27 11:06:23] 2025-07-27 15:06:22,963 [wrapper] cleanup supervisor_pilot  3584 32169
[2025-07-27 11:06:23] 2025-07-27 15:06:22,967 [wrapper] Test setup, not cleaning
[2025-07-27 11:06:23] 2025-07-27 15:06:22,971 [wrapper] apfmon messages muted
[2025-07-27 11:06:23] 2025-07-27 15:06:22,975 [wrapper] ==== wrapper stdout END ====
[2025-07-27 11:06:23] 2025-07-27 15:06:22,979 [wrapper] ==== wrapper stderr END ====
[2025-07-27 11:06:23]  *** Error codes and diagnostics ***
[2025-07-27 11:06:23]     "exeErrorCode": 0,
[2025-07-27 11:06:23]     "exeErrorDiag": "",
[2025-07-27 11:06:23]     "pilotErrorCode": 0,
[2025-07-27 11:06:23]     "pilotErrorDiag": "",
[2025-07-27 11:06:23]  *** Listing of results directory ***
[2025-07-27 11:06:23] total 407892
[2025-07-27 11:06:23] -rw-r--r-- 1 boincer umatlas    530466 Jul 27 03:44 pilot3.tar.gz
[2025-07-27 11:06:23] -rw-r--r-- 1 boincer umatlas      5112 Jul 27 03:52 queuedata.json
[2025-07-27 11:06:23] -rwx------ 1 boincer umatlas     36292 Jul 27 03:54 runpilot2-wrapper.sh
[2025-07-27 11:06:23] -rw-r--r-- 1 boincer umatlas       100 Jul 27 09:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 11:06:23] -rwxr-xr-x 1 boincer umatlas      7986 Jul 27 09:29 run_atlas
[2025-07-27 11:06:23] -rw-r--r-- 1 boincer umatlas       105 Jul 27 09:29 job.xml
[2025-07-27 11:06:23] -rw-r--r-- 2 boincer umatlas 237382841 Jul 27 09:29 EVNT.45759779._000005.pool.root.1
[2025-07-27 11:06:23] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 09:29 start_atlas.sh
[2025-07-27 11:06:23] drwxrwx--x 2 boincer umatlas      4096 Jul 27 09:29 shared
[2025-07-27 11:06:23] -rw-r--r-- 2 boincer umatlas    542879 Jul 27 09:29 input.tar.gz
[2025-07-27 11:06:23] -rw-r--r-- 1 boincer umatlas         0 Jul 27 09:29 boinc_lockfile
[2025-07-27 11:06:23] -rw-r--r-- 1 boincer umatlas      2556 Jul 27 09:29 pandaJob.out
[2025-07-27 11:06:23] -rw------- 1 boincer umatlas    980117 Jul 27 09:29 agis_schedconf.cvmfs.json
[2025-07-27 11:06:23] -rw------- 1 boincer umatlas   1593052 Jul 27 09:29 agis_ddmendpoints.agis.ALL.json
[2025-07-27 11:06:23] drwx------ 4 boincer umatlas      4096 Jul 27 09:29 pilot3
[2025-07-27 11:06:23] -rw-r--r-- 1 boincer umatlas      5868 Jul 27 11:02 init_data.xml
[2025-07-27 11:06:23] -rw-r--r-- 1 boincer umatlas       529 Jul 27 11:05 boinc_task_state.xml
[2025-07-27 11:06:23] -rw------- 1 boincer umatlas 174588886 Jul 27 11:05 HITS.45759781._000117.pool.root.1
[2025-07-27 11:06:23] -rw------- 1 boincer umatlas      1049 Jul 27 11:05 memory_monitor_summary.json
[2025-07-27 11:06:23] -rw------- 1 boincer umatlas    380900 Jul 27 11:05 log.45759781._000117.job.log.tgz.1
[2025-07-27 11:06:23] -rw------- 1 boincer umatlas      7844 Jul 27 11:05 heartbeat.json
[2025-07-27 11:06:23] -rw------- 1 boincer umatlas        95 Jul 27 11:05 pilot_heartbeat.json
[2025-07-27 11:06:23] -rw-r--r-- 1 boincer umatlas      8192 Jul 27 11:06 boinc_mmap_file
[2025-07-27 11:06:23] -rw-r--r-- 1 boincer umatlas        27 Jul 27 11:06 wrapper_checkpoint.txt
[2025-07-27 11:06:23] -rw------- 1 boincer umatlas       745 Jul 27 11:06 pilotlog.txt
[2025-07-27 11:06:23] -rw------- 1 boincer umatlas    540004 Jul 27 11:06 log.45759781._000117.job.log.1
[2025-07-27 11:06:23] -rw------- 1 boincer umatlas       357 Jul 27 11:06 output.list
[2025-07-27 11:06:23] -rw-r--r-- 1 boincer umatlas       620 Jul 27 11:06 runtime_log
[2025-07-27 11:06:23] -rw------- 1 boincer umatlas    942080 Jul 27 11:06 result.tar.gz
[2025-07-27 11:06:23] -rw-r--r-- 1 boincer umatlas      8662 Jul 27 11:06 runtime_log.err
[2025-07-27 11:06:23] -rw------- 1 boincer umatlas       659 Jul 27 11:06 A3bNDmyNB07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmUhULDmdG0Ysm.diag
[2025-07-27 11:06:23] -rw-r--r-- 1 boincer umatlas     21693 Jul 27 11:06 stderr.txt
[2025-07-27 11:06:23] HITS file was successfully produced:
[2025-07-27 11:06:23] -rw------- 1 boincer umatlas 174588886 Jul 27 11:05 shared/HITS.pool.root.1
[2025-07-27 11:06:23]  *** Contents of shared directory: ***
[2025-07-27 11:06:23] total 403788
[2025-07-27 11:06:23] -rw-r--r-- 2 boincer umatlas 237382841 Jul 27 09:29 ATLAS.root_0
[2025-07-27 11:06:23] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 09:29 start_atlas.sh
[2025-07-27 11:06:23] -rw-r--r-- 2 boincer umatlas    542879 Jul 27 09:29 input.tar.gz
[2025-07-27 11:06:23] -rw------- 1 boincer umatlas 174588886 Jul 27 11:05 HITS.pool.root.1
[2025-07-27 11:06:23] -rw------- 1 boincer umatlas    942080 Jul 27 11:06 result.tar.gz
11:06:24 (28579): run_atlas exited; CPU time 63787.013919
11:06:24 (28579): called boinc_finish(0)

</stderr_txt>
]]>

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