Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:49:16 (3960362): wrapper (7.7.26015): starting
10:49:16 (3960362): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 10:49:16] Arguments: --nthreads 12
[2025-07-27 10:49:16] Threads: 12
[2025-07-27 10:49:16] Checking for CVMFS
[2025-07-27 10:49:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 10:49:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 10:49:16] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 10:49:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 10:49:16] 2.13.0.0 2408171 18507 310312 148815 1 65 22242282 32935937 9725 16776704 0 37851083 99.689 57927185 29760 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 10:49:16] CVMFS is ok
[2025-07-27 10:49:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 10:49:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 10:49:16] Further information can be found at the LHC@home message board.
[2025-07-27 10:49:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 10:49:16] Checking for apptainer binary...
[2025-07-27 10:49:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 10:49:16] Running /usr/bin/apptainer --version
[2025-07-27 10:49:16] apptainer version 1.4.1-1.el9
[2025-07-27 10:49:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 10:49:17] c6-5-7-3.aglt2.org
[2025-07-27 10:49:17] apptainer works
[2025-07-27 10:49:17] Set ATHENA_PROC_NUMBER=12
[2025-07-27 10:49:17] Set ATHENA_CORE_NUMBER=12
[2025-07-27 10:49:17] Starting ATLAS job with PandaID=6746446370
[2025-07-27 10:49:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 12:23:50]  *** The last 200 lines of the pilot log: ***
[2025-07-27 12:23:50]  is_tar=False
[2025-07-27 12:23:50]  lfn=log.45759100._000116.job.log.tgz.1
[2025-07-27 12:23:50]  mtime=0
[2025-07-27 12:23:50]  protocol_id=None
[2025-07-27 12:23:50]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 12:23:50]  replicas=None
[2025-07-27 12:23:50]  scope=mc23_13p6TeV
[2025-07-27 12:23:50]  status=None
[2025-07-27 12:23:50]  status_code=0
[2025-07-27 12:23:50]  storage_token=
[2025-07-27 12:23:50]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6746446370/log.45759100._000116.job.log.tgz.1
[2025-07-27 12:23:50]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ae/61/log.45759100._000116.job.log.tgz.1
[2025-07-27 12:23:50]  workdir=None
[2025-07-27 12:23:50] ]
[2025-07-27 12:23:50] 2025-07-27 16:23:12,951 | INFO     | transferring file log.45759100._000116.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6746446370/log.45759100._000116.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 12:23:50] 2025-07-27 16:23:12,951 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6746446370/log.45759100._000116.job.log.tgz.1 /tmp/boinchome/slots/0/log.45759100._000116.job
[2025-07-27 12:23:50] 2025-07-27 16:23:12,971 | INFO     | adding to output.list: log.45759100._000116.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ae/61/log.45759100._000116.job.log.tg
[2025-07-27 12:23:50] 2025-07-27 16:23:12,972 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 12:23:50] 2025-07-27 16:23:12,972 | INFO     | summary of transferred files:
[2025-07-27 12:23:50] 2025-07-27 16:23:12,972 | INFO     |  -- lfn=log.45759100._000116.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 12:23:50] 2025-07-27 16:23:12,972 | INFO     | stage-out finished correctly
[2025-07-27 12:23:50] 2025-07-27 16:23:13,083 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 12:23:50] 2025-07-27 16:23:13,320 | INFO     | job 6746446370 has state=finished
[2025-07-27 12:23:50] 2025-07-27 16:23:13,321 | INFO     | preparing for final server update for job 6746446370 in state='finished'
[2025-07-27 12:23:50] 2025-07-27 16:23:13,321 | INFO     | this job has now completed (state=finished)
[2025-07-27 12:23:50] 2025-07-27 16:23:13,321 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 12:23:50] 2025-07-27 16:23:13,321 | INFO     | log transfer has been attempted: DONE
[2025-07-27 12:23:50] 2025-07-27 16:23:13,322 | INFO     | job 6746446370 has finished - writing final server update
[2025-07-27 12:23:50] 2025-07-27 16:23:13,322 | INFO     | total number of processed events: 400 (read)
[2025-07-27 12:23:50] 2025-07-27 16:23:13,323 | INFO     | executing command: lscpu
[2025-07-27 12:23:50] 2025-07-27 16:23:13,368 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 12:23:50] 2025-07-27 16:23:15,112 | INFO     | monitor loop #406: job 0:6746446370 is in state 'finished'
[2025-07-27 12:23:50] 2025-07-27 16:23:15,113 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 12:23:50] 2025-07-27 16:23:17,615 | INFO     | monitor loop #407: job 0:6746446370 is in state 'finished'
[2025-07-27 12:23:50] 2025-07-27 16:23:17,616 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 12:23:50] 2025-07-27 16:23:18,090 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 12:23:50] 2025-07-27 16:23:18,098 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2837.2616428571428
[2025-07-27 12:23:50] 2025-07-27 16:23:18,107 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6746446370/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 12:23:50] 2025-07-27 16:23:18,108 | INFO     | extracted standard info from prmon json
[2025-07-27 12:23:50] 2025-07-27 16:23:18,108 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 12:23:50] 2025-07-27 16:23:18,108 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 12:23:50] 2025-07-27 16:23:18,109 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 12:23:50] 2025-07-27 16:23:18,109 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 12:23:50] 2025-07-27 16:23:18,111 | INFO     | fitting pss+swap vs Time
[2025-07-27 12:23:50] 2025-07-27 16:23:18,111 | INFO     | sum of square deviations: 190403570.0
[2025-07-27 12:23:50] 2025-07-27 16:23:18,111 | INFO     | sum of deviations: -13204296558.000002
[2025-07-27 12:23:50] 2025-07-27 16:23:18,112 | INFO     | mean x: 1753630668.0
[2025-07-27 12:23:50] 2025-07-27 16:23:18,112 | INFO     | mean y: 2452550.894117647
[2025-07-27 12:23:50] 2025-07-27 16:23:18,112 | INFO     | -- intersect: 121614980054.8461
[2025-07-27 12:23:50] 2025-07-27 16:23:18,112 | INFO     | intersect: 121614980054.8461
[2025-07-27 12:23:50] 2025-07-27 16:23:18,112 | INFO     | chi2: 0.20594643513656466
[2025-07-27 12:23:50] 2025-07-27 16:23:18,112 | INFO     | -- intersect: 121614980054.8461
[2025-07-27 12:23:50] 2025-07-27 16:23:18,112 | INFO     | current memory leak: -69.35 B/s (using 85 data points, chi2=0.21)
[2025-07-27 12:23:50] 2025-07-27 16:23:18,113 | INFO     | could have reported an average CPU frequency of 2700 MHz (7 samples)
[2025-07-27 12:23:50] 2025-07-27 16:23:18,113 | INFO     | ..............................
[2025-07-27 12:23:50] 2025-07-27 16:23:18,113 | INFO     | . Timing measurements:
[2025-07-27 12:23:50] 2025-07-27 16:23:18,113 | INFO     | . get job = 0 s
[2025-07-27 12:23:50] 2025-07-27 16:23:18,113 | INFO     | . initial setup = 2 s
[2025-07-27 12:23:50] 2025-07-27 16:23:18,113 | INFO     | . payload setup = 8 s
[2025-07-27 12:23:50] 2025-07-27 16:23:18,113 | INFO     | . stage-in = 0 s
[2025-07-27 12:23:50] 2025-07-27 16:23:18,113 | INFO     | . payload execution = 5591 s
[2025-07-27 12:23:50] 2025-07-27 16:23:18,113 | INFO     | . stage-out = 0 s
[2025-07-27 12:23:50] 2025-07-27 16:23:18,113 | INFO     | . log creation = 0 s
[2025-07-27 12:23:50] 2025-07-27 16:23:18,113 | INFO     | ..............................
[2025-07-27 12:23:50] 2025-07-27 16:23:18,203 | INFO     | 
[2025-07-27 12:23:50] 2025-07-27 16:23:18,204 | INFO     | job summary report
[2025-07-27 12:23:50] 2025-07-27 16:23:18,204 | INFO     | --------------------------------------------------
[2025-07-27 12:23:50] 2025-07-27 16:23:18,204 | INFO     | PanDA job id: 6746446370
[2025-07-27 12:23:50] 2025-07-27 16:23:18,204 | INFO     | task id: 45759100
[2025-07-27 12:23:50] 2025-07-27 16:23:18,204 | INFO     | errors: (none)
[2025-07-27 12:23:50] 2025-07-27 16:23:18,204 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 12:23:50] 2025-07-27 16:23:18,204 | INFO     | pilot state: finished 
[2025-07-27 12:23:50] 2025-07-27 16:23:18,204 | INFO     | transexitcode: 0
[2025-07-27 12:23:50] 2025-07-27 16:23:18,204 | INFO     | exeerrorcode: 0
[2025-07-27 12:23:50] 2025-07-27 16:23:18,204 | INFO     | exeerrordiag: 
[2025-07-27 12:23:50] 2025-07-27 16:23:18,204 | INFO     | exitcode: 0
[2025-07-27 12:23:50] 2025-07-27 16:23:18,205 | INFO     | exitmsg: OK
[2025-07-27 12:23:50] 2025-07-27 16:23:18,205 | INFO     | cpuconsumptiontime: 59003 s
[2025-07-27 12:23:50] 2025-07-27 16:23:18,205 | INFO     | nevents: 400
[2025-07-27 12:23:50] 2025-07-27 16:23:18,205 | INFO     | neventsw: 0
[2025-07-27 12:23:50] 2025-07-27 16:23:18,205 | INFO     | pid: 3972224
[2025-07-27 12:23:50] 2025-07-27 16:23:18,205 | INFO     | pgrp: 3972224
[2025-07-27 12:23:50] 2025-07-27 16:23:18,205 | INFO     | corecount: 12
[2025-07-27 12:23:50] 2025-07-27 16:23:18,205 | INFO     | event service: False
[2025-07-27 12:23:50] 2025-07-27 16:23:18,205 | INFO     | sizes: {0: 2396643, 1: 2397499, 7: 2397761, 12: 2397789, 5604: 2424290, 5606: 2433472, 5611: 2433610}
[2025-07-27 12:23:50] 2025-07-27 16:23:18,205 | INFO     | --------------------------------------------------
[2025-07-27 12:23:50] 2025-07-27 16:23:18,205 | INFO     | 
[2025-07-27 12:23:50] 2025-07-27 16:23:18,205 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 12:23:50] 2025-07-27 16:23:18,225 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 12:23:50] 2025-07-27 16:23:18,225 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 12:23:50] 2025-07-27 16:23:18,225 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 12:23:50] 2025-07-27 16:23:18,226 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 12:23:50] 2025-07-27 16:23:18,226 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 12:23:50] 2025-07-27 16:23:18,226 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 12:23:50] 2025-07-27 16:23:18,226 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 12:23:50] 2025-07-27 16:23:18,226 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 12:23:50] 2025-07-27 16:23:18,226 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 12:23:50] 2025-07-27 16:23:18,226 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 12:23:50] 2025-07-27 16:23:18,226 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 12:23:50] 2025-07-27 16:23:18,226 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 12:23:50] 2025-07-27 16:23:18,226 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 12:23:50] 2025-07-27 16:23:18,226 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 12:23:50] 2025-07-27 16:23:18,227 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 12:23:50] 2025-07-27 16:23:18,227 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 12:23:50] 2025-07-27 16:23:18,227 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 12:23:50] 2025-07-27 16:23:18,227 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 12:23:50] 2025-07-27 16:23:18,227 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 12:23:50] 2025-07-27 16:23:18,227 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 12:23:50] 2025-07-27 16:23:18,227 | INFO     | job 6746446370 has completed (purged errors)
[2025-07-27 12:23:50] 2025-07-27 16:23:18,227 | INFO     | overall cleanup function is called
[2025-07-27 12:23:50] 2025-07-27 16:23:19,234 | INFO     | --- collectZombieJob: --- 10, [3972224]
[2025-07-27 12:23:50] 2025-07-27 16:23:19,234 | INFO     | zombie collector waiting for pid 3972224
[2025-07-27 12:23:50] 2025-07-27 16:23:19,234 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 12:23:50] 2025-07-27 16:23:19,234 | INFO     | collected zombie processes
[2025-07-27 12:23:50] 2025-07-27 16:23:19,234 | INFO     | will attempt to kill all subprocesses of pid=3972224
[2025-07-27 12:23:50] 2025-07-27 16:23:19,508 | INFO     | process IDs to be killed: [3972224] (in reverse order)
[2025-07-27 12:23:50] 2025-07-27 16:23:19,610 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 12:23:50] 2025-07-27 16:23:19,610 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 12:23:50] 2025-07-27 16:23:19,625 | INFO     | did not find any defunct processes belonging to 3972224
[2025-07-27 12:23:50] 2025-07-27 16:23:19,639 | INFO     | did not find any defunct processes belonging to 3972224
[2025-07-27 12:23:50] 2025-07-27 16:23:19,639 | INFO     | ready for new job
[2025-07-27 12:23:50] 2025-07-27 16:23:19,640 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 12:23:50] 2025-07-27 16:23:19,642 | INFO     | ***************************************
[2025-07-27 12:23:50] 2025-07-27 16:23:19,642 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 12:23:50] 2025-07-27 16:23:19,642 | INFO     | ***************************************
[2025-07-27 12:23:50] 2025-07-27 16:23:19,642 | INFO     | 
[2025-07-27 12:23:50] 2025-07-27 16:23:19,659 | INFO     | architecture information:
[2025-07-27 12:23:50] 2025-07-27 16:23:19,659 | INFO     | executing command: cat /etc/os-release
[2025-07-27 12:23:50] 2025-07-27 16:23:19,678 | INFO     | cat /etc/os-release:
[2025-07-27 12:23:50] NAME="CentOS Linux"
[2025-07-27 12:23:50] VERSION="7 (Core)"
[2025-07-27 12:23:50] ID="centos"
[2025-07-27 12:23:50] ID_LIKE="rhel fedora"
[2025-07-27 12:23:50] VERSION_ID="7"
[2025-07-27 12:23:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 12:23:50] ANSI_COLOR="0;31"
[2025-07-27 12:23:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 12:23:50] HOME_URL="https://www.centos.org/"
[2025-07-27 12:23:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 12:23:50] 
[2025-07-27 12:23:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 12:23:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 12:23:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 12:23:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 12:23:50] 
[2025-07-27 12:23:50] 2025-07-27 16:23:19,678 | INFO     | ***************************************
[2025-07-27 12:23:50] 2025-07-27 16:23:20,181 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 12:23:50] 2025-07-27 16:23:20,198 | INFO     | sufficient remaining disk space (76298584064 B)
[2025-07-27 12:23:50] 2025-07-27 16:23:20,198 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 12:23:50] 2025-07-27 16:23:20,198 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 12:23:50] 2025-07-27 16:23:20,199 | INFO     | update_server=False
[2025-07-27 12:23:50] 2025-07-27 16:23:20,199 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 12:23:50] 2025-07-27 16:23:20,199 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 12:23:50] 2025-07-27 16:23:20,418 | INFO     | all data control threads have been joined
[2025-07-27 12:23:50] 2025-07-27 16:23:20,719 | INFO     | all payload control threads have been joined
[2025-07-27 12:23:50] 2025-07-27 16:23:20,736 | INFO     | all job control threads have been joined
[2025-07-27 12:23:50] 2025-07-27 16:23:21,093 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 12:23:50] 2025-07-27 16:23:21,124 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 12:23:50] 2025-07-27 16:23:21,124 | INFO     | aborting loop
[2025-07-27 12:23:50] 2025-07-27 16:23:21,203 | INFO     | [job] retrieve thread has finished
[2025-07-27 12:23:50] 2025-07-27 16:23:21,204 | INFO     | [job] queue monitor thread has finished
[2025-07-27 12:23:50] 2025-07-27 16:23:21,423 | INFO     | [data] control thread has finished
[2025-07-27 12:23:50] 2025-07-27 16:23:21,624 | INFO     | [payload] validate_post thread has finished
[2025-07-27 12:23:50] 2025-07-27 16:23:21,724 | INFO     | [payload] control thread has finished
[2025-07-27 12:23:50] 2025-07-27 16:23:21,741 | INFO     | [job] control thread has finished
[2025-07-27 12:23:50] 2025-07-27 16:23:21,947 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 12:23:50] 2025-07-27 16:23:22,129 | INFO     | [job] job monitor thread has finished
[2025-07-27 12:23:50] 2025-07-27 16:23:22,182 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 12:23:50] 2025-07-27 16:23:22,241 | INFO     | [job] validate thread has finished
[2025-07-27 12:23:50] 2025-07-27 16:23:22,499 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 12:23:50] 2025-07-27 16:23:22,669 | INFO     | [data] copytool_in thread has finished
[2025-07-27 12:23:50] 2025-07-27 16:23:22,702 | INFO     | [payload] failed_post thread has finished
[2025-07-27 12:23:50] 2025-07-27 16:23:23,098 | INFO     | [data] copytool_out thread has finished
[2025-07-27 12:23:50] 2025-07-27 16:23:23,671 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 12:23:50] 2025-07-27 16:23:27,676 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 12:23:50] 2025-07-27 16:23:30,882 | INFO     | job.realtimelogging is not enabled
[2025-07-27 12:23:50] 2025-07-27 16:23:31,887 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 12:23:50] 2025-07-27 16:23:31,951 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140625459160896)>', '<ExcThread(monitor, started 140625097758464)>']
[2025-07-27 12:23:50] 2025-07-27 16:23:36,976 | INFO     | all workflow threads have been joined
[2025-07-27 12:23:50] 2025-07-27 16:23:36,976 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 12:23:50] 2025-07-27 16:23:36,977 | INFO     | traces error code: 0
[2025-07-27 12:23:50] 2025-07-27 16:23:36,977 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 12:23:50] 2025-07-27 16:23:49,649 | INFO     | PID=3964107 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 12:23:50] 2025-07-27 16:23:49,649 | INFO     | .. there are 9 such processes running
[2025-07-27 12:23:50] 2025-07-27 16:23:49,649 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 12:23:50] 2025-07-27 16:23:49,649 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 12:23:50] 2025-07-27 16:23:49,649 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 12:23:50] 2025-07-27 16:23:49,649 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 12:23:50] 2025-07-27 16:23:49,650 | CRITICAL | thread 'MainThread' is not alive
[2025-07-27 12:23:50] 2025-07-27 16:23:49,650 | INFO     | [monitor] control thread has ended
[2025-07-27 12:23:50] 2025-07-27 16:23:49,841 [wrapper] ==== pilot stdout END ====
[2025-07-27 12:23:50] 2025-07-27 16:23:49,844 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 12:23:50] 2025-07-27 16:23:49,847 [wrapper] pilotpid: 3964107
[2025-07-27 12:23:50] 2025-07-27 16:23:49,850 [wrapper] Pilot exit status: 0
[2025-07-27 12:23:50] 2025-07-27 16:23:49,862 [wrapper] pandaids: 6746446370
[2025-07-27 12:23:50] 2025-07-27 16:23:49,946 [wrapper] cleanup supervisor_pilot  175328 3964108
[2025-07-27 12:23:50] 2025-07-27 16:23:49,949 [wrapper] Test setup, not cleaning
[2025-07-27 12:23:50] 2025-07-27 16:23:49,952 [wrapper] apfmon messages muted
[2025-07-27 12:23:50] 2025-07-27 16:23:49,955 [wrapper] ==== wrapper stdout END ====
[2025-07-27 12:23:50] 2025-07-27 16:23:49,958 [wrapper] ==== wrapper stderr END ====
[2025-07-27 12:23:50]  *** Error codes and diagnostics ***
[2025-07-27 12:23:50]     "exeErrorCode": 0,
[2025-07-27 12:23:50]     "exeErrorDiag": "",
[2025-07-27 12:23:50]     "pilotErrorCode": 0,
[2025-07-27 12:23:50]     "pilotErrorDiag": "",
[2025-07-27 12:23:50]  *** Listing of results directory ***
[2025-07-27 12:23:50] total 392276
[2025-07-27 12:23:50] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 03:44 pilot3.tar.gz
[2025-07-27 12:23:50] -rwx------. 1 boincer umatlas     36292 Jul 27 03:48 runpilot2-wrapper.sh
[2025-07-27 12:23:50] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 03:48 queuedata.json
[2025-07-27 12:23:50] -rw-r--r--. 1 boincer umatlas       100 Jul 27 10:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 12:23:50] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 10:49 run_atlas
[2025-07-27 12:23:50] -rw-r--r--. 1 boincer umatlas       105 Jul 27 10:49 job.xml
[2025-07-27 12:23:50] -rw-r--r--. 2 boincer umatlas 230125915 Jul 27 10:49 EVNT.45759097._000005.pool.root.1
[2025-07-27 12:23:50] -rw-r--r--. 2 boincer umatlas    542885 Jul 27 10:49 input.tar.gz
[2025-07-27 12:23:50] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 10:49 start_atlas.sh
[2025-07-27 12:23:50] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 10:49 shared
[2025-07-27 12:23:50] -rw-r--r--. 1 boincer umatlas         0 Jul 27 10:49 boinc_lockfile
[2025-07-27 12:23:50] -rw-r--r--. 1 boincer umatlas      2562 Jul 27 10:49 pandaJob.out
[2025-07-27 12:23:50] -rw-------. 1 boincer umatlas    980109 Jul 27 10:49 agis_schedconf.cvmfs.json
[2025-07-27 12:23:50] -rw-------. 1 boincer umatlas   1593052 Jul 27 10:49 agis_ddmendpoints.agis.ALL.json
[2025-07-27 12:23:50] drwx------. 4 boincer umatlas      4096 Jul 27 10:49 pilot3
[2025-07-27 12:23:50] -rw-r--r--. 1 boincer umatlas      6841 Jul 27 12:21 init_data.xml
[2025-07-27 12:23:50] -rw-------. 1 boincer umatlas 165847102 Jul 27 12:22 HITS.45759100._000116.pool.root.1
[2025-07-27 12:23:50] -rw-r--r--. 1 boincer umatlas       529 Jul 27 12:22 boinc_task_state.xml
[2025-07-27 12:23:50] -rw-------. 1 boincer umatlas      1037 Jul 27 12:23 memory_monitor_summary.json
[2025-07-27 12:23:50] -rw-------. 1 boincer umatlas    380312 Jul 27 12:23 log.45759100._000116.job.log.tgz.1
[2025-07-27 12:23:50] -rw-------. 1 boincer umatlas        95 Jul 27 12:23 pilot_heartbeat.json
[2025-07-27 12:23:50] -rw-------. 1 boincer umatlas      7811 Jul 27 12:23 heartbeat.json
[2025-07-27 12:23:50] -rw-r--r--. 1 boincer umatlas        27 Jul 27 12:23 wrapper_checkpoint.txt
[2025-07-27 12:23:50] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 12:23 boinc_mmap_file
[2025-07-27 12:23:50] -rw-------. 1 boincer umatlas       892 Jul 27 12:23 pilotlog.txt
[2025-07-27 12:23:50] -rw-------. 1 boincer umatlas    539911 Jul 27 12:23 log.45759100._000116.job.log.1
[2025-07-27 12:23:50] -rw-------. 1 boincer umatlas       357 Jul 27 12:23 output.list
[2025-07-27 12:23:50] -rw-r--r--. 1 boincer umatlas       620 Jul 27 12:23 runtime_log
[2025-07-27 12:23:50] -rw-------. 1 boincer umatlas    942080 Jul 27 12:23 result.tar.gz
[2025-07-27 12:23:50] -rw-------. 1 boincer umatlas       654 Jul 27 12:23 W2YMDmuIB07n9Rq4apOajLDm4fhM0noT9bVof3QYDm6C2KDmLQ9Ogm.diag
[2025-07-27 12:23:50] -rw-r--r--. 1 boincer umatlas      8662 Jul 27 12:23 runtime_log.err
[2025-07-27 12:23:50] -rw-r--r--. 1 boincer umatlas     21531 Jul 27 12:23 stderr.txt
[2025-07-27 12:23:50] HITS file was successfully produced:
[2025-07-27 12:23:50] -rw-------. 1 boincer umatlas 165847102 Jul 27 12:22 shared/HITS.pool.root.1
[2025-07-27 12:23:50]  *** Contents of shared directory: ***
[2025-07-27 12:23:50] total 388172
[2025-07-27 12:23:50] -rw-r--r--. 2 boincer umatlas 230125915 Jul 27 10:49 ATLAS.root_0
[2025-07-27 12:23:50] -rw-r--r--. 2 boincer umatlas    542885 Jul 27 10:49 input.tar.gz
[2025-07-27 12:23:50] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 10:49 start_atlas.sh
[2025-07-27 12:23:50] -rw-------. 1 boincer umatlas 165847102 Jul 27 12:22 HITS.pool.root.1
[2025-07-27 12:23:50] -rw-------. 1 boincer umatlas    942080 Jul 27 12:23 result.tar.gz
12:23:51 (3960362): run_atlas exited; CPU time 59058.523911
12:23:51 (3960362): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN