Stderr output

<core_client_version>7.20.5</core_client_version>
<![CDATA[
<stderr_txt>
18:45:06 (1401310): wrapper (7.7.26015): starting
18:45:06 (1401310): wrapper: running run_atlas (--nthreads 4)
[2025-07-27 18:45:06] Arguments: --nthreads 4
[2025-07-27 18:45:06] Threads: 4
[2025-07-27 18:45:06] Checking for CVMFS
[2025-07-27 18:45:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 18:45:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 18:45:06] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 18:45:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 18:45:06] 2.13.0.0 3104146 2471 93384 148818 0 188 2911111 4096001 2766 130560 0 6871996 99.997 83604 957 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-07-27 18:45:06] CVMFS is ok
[2025-07-27 18:45:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 18:45:06] Small home clusters do not require a local http proxy but it is suggested if
[2025-07-27 18:45:06] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-07-27 18:45:06] Further information can be found at the LHC@home message board.
[2025-07-27 18:45:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 18:45:06] Checking for apptainer binary...
[2025-07-27 18:45:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 18:45:06] Running /usr/bin/apptainer --version
[2025-07-27 18:45:06] apptainer version 1.2.3
[2025-07-27 18:45:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 18:45:06] Ryzen-7-7700-Zen4-Deb12
[2025-07-27 18:45:06] apptainer works
[2025-07-27 18:45:06] Set ATHENA_PROC_NUMBER=4
[2025-07-27 18:45:06] Set ATHENA_CORE_NUMBER=4
[2025-07-27 18:45:06] Starting ATLAS job with PandaID=6746386459
[2025-07-27 18:45:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 20:21:08]  *** The last 200 lines of the pilot log: ***
[2025-07-27 20:21:08]  lfn=log.45758375._000097.job.log.tgz.1
[2025-07-27 20:21:08]  mtime=0
[2025-07-27 20:21:08]  protocol_id=None
[2025-07-27 20:21:08]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 20:21:08]  replicas=None
[2025-07-27 20:21:08]  scope=mc23_13p6TeV
[2025-07-27 20:21:08]  status=None
[2025-07-27 20:21:08]  status_code=0
[2025-07-27 20:21:08]  storage_token=
[2025-07-27 20:21:08]  surl=/var/lib/boinc-client/slots/2/PanDA_Pilot-6746386459/log.45758375._000097.job.log.tgz.1
[2025-07-27 20:21:08]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6b/dc/log.45758375._000097.job.log.tgz.1
[2025-07-27 20:21:08]  workdir=None
[2025-07-27 20:21:08] ]
[2025-07-27 20:21:08] 2025-07-27 18:20:34,235 | INFO     | transferring file log.45758375._000097.job.log.tgz.1 from /var/lib/boinc-client/slots/2/PanDA_Pilot-6746386459/log.45758375._000097.job.log.tgz.1 to /var/lib/boinc
[2025-07-27 20:21:08] 2025-07-27 18:20:34,236 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/2/PanDA_Pilot-6746386459/log.45758375._000097.job.log.tgz.1 /var/lib/boinc-client/slots/2/log.457583
[2025-07-27 20:21:08] 2025-07-27 18:20:34,252 | INFO     | adding to output.list: log.45758375._000097.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6b/dc/log.45758375._000097.job.log.tg
[2025-07-27 20:21:08] 2025-07-27 18:20:34,253 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 20:21:08] 2025-07-27 18:20:34,253 | INFO     | summary of transferred files:
[2025-07-27 20:21:08] 2025-07-27 18:20:34,253 | INFO     |  -- lfn=log.45758375._000097.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 20:21:08] 2025-07-27 18:20:34,253 | INFO     | stage-out finished correctly
[2025-07-27 20:21:08] 2025-07-27 18:20:34,514 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 20:21:08] 2025-07-27 18:20:34,591 | INFO     | monitor loop #426: job 0:6746386459 is in state 'finished'
[2025-07-27 20:21:08] 2025-07-27 18:20:34,591 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 20:21:08] 2025-07-27 18:20:35,623 | INFO     | job 6746386459 has state=finished
[2025-07-27 20:21:08] 2025-07-27 18:20:35,623 | INFO     | preparing for final server update for job 6746386459 in state='finished'
[2025-07-27 20:21:08] 2025-07-27 18:20:35,624 | INFO     | this job has now completed (state=finished)
[2025-07-27 20:21:08] 2025-07-27 18:20:35,624 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 20:21:08] 2025-07-27 18:20:35,624 | INFO     | log transfer has been attempted: DONE
[2025-07-27 20:21:08] 2025-07-27 18:20:35,624 | INFO     | job 6746386459 has finished - writing final server update
[2025-07-27 20:21:08] 2025-07-27 18:20:35,624 | INFO     | total number of processed events: 400 (read)
[2025-07-27 20:21:08] 2025-07-27 18:20:35,624 | INFO     | executing command: lscpu
[2025-07-27 20:21:08] 2025-07-27 18:20:35,639 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 20:21:08] 2025-07-27 18:20:36,521 | INFO     | PID=1404994 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 20:21:08] 2025-07-27 18:20:36,522 | INFO     | .. there are 4 such processes running
[2025-07-27 20:21:08] 2025-07-27 18:20:37,095 | INFO     | monitor loop #427: job 0:6746386459 is in state 'finished'
[2025-07-27 20:21:08] 2025-07-27 18:20:37,095 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 20:21:08] 2025-07-27 18:20:37,193 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 20:21:08] 2025-07-27 18:20:37,194 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 4857.8285000000005
[2025-07-27 20:21:08] 2025-07-27 18:20:37,196 | INFO     | using path: /var/lib/boinc-client/slots/2/PanDA_Pilot-6746386459/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 20:21:08] 2025-07-27 18:20:37,196 | INFO     | extracted standard info from prmon json
[2025-07-27 20:21:08] 2025-07-27 18:20:37,196 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 20:21:08] 2025-07-27 18:20:37,196 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 20:21:08] 2025-07-27 18:20:37,196 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 20:21:08] 2025-07-27 18:20:37,196 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 20:21:08] 2025-07-27 18:20:37,197 | INFO     | fitting pss+swap vs Time
[2025-07-27 20:21:08] 2025-07-27 18:20:37,197 | INFO     | sum of square deviations: 204163828.0
[2025-07-27 20:21:08] 2025-07-27 18:20:37,198 | INFO     | sum of deviations: -5206775475.0
[2025-07-27 20:21:08] 2025-07-27 18:20:37,198 | INFO     | mean x: 1753637656.0
[2025-07-27 20:21:08] 2025-07-27 18:20:37,198 | INFO     | mean y: 2384625.896551724
[2025-07-27 20:21:08] 2025-07-27 18:20:37,198 | INFO     | -- intersect: 44725280100.2961
[2025-07-27 20:21:08] 2025-07-27 18:20:37,198 | INFO     | intersect: 44725280100.2961
[2025-07-27 20:21:08] 2025-07-27 18:20:37,198 | INFO     | chi2: 0.018421090394201638
[2025-07-27 20:21:08] 2025-07-27 18:20:37,198 | INFO     | -- intersect: 44725280100.2961
[2025-07-27 20:21:08] 2025-07-27 18:20:37,198 | INFO     | current memory leak: -25.50 B/s (using 87 data points, chi2=0.02)
[2025-07-27 20:21:08] 2025-07-27 18:20:37,198 | INFO     | could have reported an average CPU frequency of 4818 MHz (7 samples)
[2025-07-27 20:21:08] 2025-07-27 18:20:37,198 | INFO     | ..............................
[2025-07-27 20:21:08] 2025-07-27 18:20:37,198 | INFO     | . Timing measurements:
[2025-07-27 20:21:08] 2025-07-27 18:20:37,198 | INFO     | . get job = 0 s
[2025-07-27 20:21:08] 2025-07-27 18:20:37,198 | INFO     | . initial setup = 1 s
[2025-07-27 20:21:08] 2025-07-27 18:20:37,198 | INFO     | . payload setup = 2 s
[2025-07-27 20:21:08] 2025-07-27 18:20:37,198 | INFO     | . stage-in = 0 s
[2025-07-27 20:21:08] 2025-07-27 18:20:37,198 | INFO     | . payload execution = 5704 s
[2025-07-27 20:21:08] 2025-07-27 18:20:37,198 | INFO     | . stage-out = 0 s
[2025-07-27 20:21:08] 2025-07-27 18:20:37,198 | INFO     | . log creation = 0 s
[2025-07-27 20:21:08] 2025-07-27 18:20:37,198 | INFO     | ..............................
[2025-07-27 20:21:08] 2025-07-27 18:20:37,250 | INFO     | 
[2025-07-27 20:21:08] 2025-07-27 18:20:37,250 | INFO     | job summary report
[2025-07-27 20:21:08] 2025-07-27 18:20:37,250 | INFO     | --------------------------------------------------
[2025-07-27 20:21:08] 2025-07-27 18:20:37,250 | INFO     | PanDA job id: 6746386459
[2025-07-27 20:21:08] 2025-07-27 18:20:37,250 | INFO     | task id: 45758375
[2025-07-27 20:21:08] 2025-07-27 18:20:37,250 | INFO     | errors: (none)
[2025-07-27 20:21:08] 2025-07-27 18:20:37,251 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 20:21:08] 2025-07-27 18:20:37,251 | INFO     | pilot state: finished 
[2025-07-27 20:21:08] 2025-07-27 18:20:37,251 | INFO     | transexitcode: 0
[2025-07-27 20:21:08] 2025-07-27 18:20:37,251 | INFO     | exeerrorcode: 0
[2025-07-27 20:21:08] 2025-07-27 18:20:37,251 | INFO     | exeerrordiag: 
[2025-07-27 20:21:08] 2025-07-27 18:20:37,251 | INFO     | exitcode: 0
[2025-07-27 20:21:08] 2025-07-27 18:20:37,251 | INFO     | exitmsg: OK
[2025-07-27 20:21:08] 2025-07-27 18:20:37,251 | INFO     | cpuconsumptiontime: 22119 s
[2025-07-27 20:21:08] 2025-07-27 18:20:37,251 | INFO     | nevents: 400
[2025-07-27 20:21:08] 2025-07-27 18:20:37,251 | INFO     | neventsw: 0
[2025-07-27 20:21:08] 2025-07-27 18:20:37,251 | INFO     | pid: 1411501
[2025-07-27 20:21:08] 2025-07-27 18:20:37,251 | INFO     | pgrp: 1411501
[2025-07-27 20:21:08] 2025-07-27 18:20:37,251 | INFO     | corecount: 4
[2025-07-27 20:21:08] 2025-07-27 18:20:37,251 | INFO     | event service: False
[2025-07-27 20:21:08] 2025-07-27 18:20:37,251 | INFO     | sizes: {0: 2397299, 1: 2397498, 2: 2397760, 11: 2397788, 5710: 2433555, 5711: 2433555, 5713: 2433877}
[2025-07-27 20:21:08] 2025-07-27 18:20:37,251 | INFO     | --------------------------------------------------
[2025-07-27 20:21:08] 2025-07-27 18:20:37,251 | INFO     | 
[2025-07-27 20:21:08] 2025-07-27 18:20:37,251 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/2
[2025-07-27 20:21:08] 2025-07-27 18:20:37,262 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 20:21:08] 2025-07-27 18:20:37,262 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 20:21:08] 2025-07-27 18:20:37,262 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 20:21:08] 2025-07-27 18:20:37,262 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 20:21:08] 2025-07-27 18:20:37,262 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 20:21:08] 2025-07-27 18:20:37,263 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 20:21:08] 2025-07-27 18:20:37,263 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 20:21:08] 2025-07-27 18:20:37,263 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 20:21:08] 2025-07-27 18:20:37,263 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 20:21:08] 2025-07-27 18:20:37,263 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 20:21:08] 2025-07-27 18:20:37,263 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 20:21:08] 2025-07-27 18:20:37,263 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 20:21:08] 2025-07-27 18:20:37,263 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 20:21:08] 2025-07-27 18:20:37,263 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 20:21:08] 2025-07-27 18:20:37,263 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 20:21:08] 2025-07-27 18:20:37,263 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 20:21:08] 2025-07-27 18:20:37,263 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 20:21:08] 2025-07-27 18:20:37,263 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 20:21:08] 2025-07-27 18:20:37,263 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 20:21:08] 2025-07-27 18:20:37,263 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 20:21:08] 2025-07-27 18:20:37,263 | INFO     | job 6746386459 has completed (purged errors)
[2025-07-27 20:21:08] 2025-07-27 18:20:37,263 | INFO     | overall cleanup function is called
[2025-07-27 20:21:08] 2025-07-27 18:20:38,268 | INFO     | --- collectZombieJob: --- 10, [1411501]
[2025-07-27 20:21:08] 2025-07-27 18:20:38,268 | INFO     | zombie collector waiting for pid 1411501
[2025-07-27 20:21:08] 2025-07-27 18:20:38,268 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 20:21:08] 2025-07-27 18:20:38,268 | INFO     | collected zombie processes
[2025-07-27 20:21:08] 2025-07-27 18:20:38,268 | INFO     | will attempt to kill all subprocesses of pid=1411501
[2025-07-27 20:21:08] 2025-07-27 18:20:38,309 | INFO     | process IDs to be killed: [1411501] (in reverse order)
[2025-07-27 20:21:08] 2025-07-27 18:20:38,335 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 20:21:08] 2025-07-27 18:20:38,335 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 20:21:08] 2025-07-27 18:20:38,337 | INFO     | did not find any defunct processes belonging to 1411501
[2025-07-27 20:21:08] 2025-07-27 18:20:38,338 | INFO     | did not find any defunct processes belonging to 1411501
[2025-07-27 20:21:08] 2025-07-27 18:20:38,338 | INFO     | ready for new job
[2025-07-27 20:21:08] 2025-07-27 18:20:38,338 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 20:21:08] 2025-07-27 18:20:38,339 | INFO     | ***************************************
[2025-07-27 20:21:08] 2025-07-27 18:20:38,339 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 20:21:08] 2025-07-27 18:20:38,339 | INFO     | ***************************************
[2025-07-27 20:21:08] 2025-07-27 18:20:38,339 | INFO     | 
[2025-07-27 20:21:08] 2025-07-27 18:20:38,339 | INFO     | architecture information:
[2025-07-27 20:21:08] 2025-07-27 18:20:38,340 | INFO     | executing command: cat /etc/os-release
[2025-07-27 20:21:08] 2025-07-27 18:20:38,347 | INFO     | cat /etc/os-release:
[2025-07-27 20:21:08] NAME="CentOS Linux"
[2025-07-27 20:21:08] VERSION="7 (Core)"
[2025-07-27 20:21:08] ID="centos"
[2025-07-27 20:21:08] ID_LIKE="rhel fedora"
[2025-07-27 20:21:08] VERSION_ID="7"
[2025-07-27 20:21:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 20:21:08] ANSI_COLOR="0;31"
[2025-07-27 20:21:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 20:21:08] HOME_URL="https://www.centos.org/"
[2025-07-27 20:21:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 20:21:08] 
[2025-07-27 20:21:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 20:21:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 20:21:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 20:21:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 20:21:08] 
[2025-07-27 20:21:08] 2025-07-27 18:20:38,348 | INFO     | ***************************************
[2025-07-27 20:21:08] 2025-07-27 18:20:38,850 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/2
[2025-07-27 20:21:08] 2025-07-27 18:20:38,860 | INFO     | sufficient remaining disk space (883780747264 B)
[2025-07-27 20:21:08] 2025-07-27 18:20:38,860 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 20:21:08] 2025-07-27 18:20:38,860 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 20:21:08] 2025-07-27 18:20:38,860 | INFO     | update_server=False
[2025-07-27 20:21:08] 2025-07-27 18:20:38,860 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 20:21:08] 2025-07-27 18:20:38,860 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 20:21:08] 2025-07-27 18:20:38,860 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 20:21:08] 2025-07-27 18:20:38,860 | INFO     | aborting loop
[2025-07-27 20:21:08] 2025-07-27 18:20:38,967 | INFO     | all data control threads have been joined
[2025-07-27 20:21:08] 2025-07-27 18:20:39,003 | INFO     | all payload control threads have been joined
[2025-07-27 20:21:08] 2025-07-27 18:20:39,526 | INFO     | all job control threads have been joined
[2025-07-27 20:21:08] 2025-07-27 18:20:39,799 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 20:21:08] 2025-07-27 18:20:39,863 | INFO     | [job] queue monitor thread has finished
[2025-07-27 20:21:08] 2025-07-27 18:20:39,864 | INFO     | [job] retrieve thread has finished
[2025-07-27 20:21:08] 2025-07-27 18:20:39,865 | INFO     | [job] job monitor thread has finished
[2025-07-27 20:21:08] 2025-07-27 18:20:39,971 | INFO     | [data] control thread has finished
[2025-07-27 20:21:08] 2025-07-27 18:20:40,007 | INFO     | [payload] control thread has finished
[2025-07-27 20:21:08] 2025-07-27 18:20:40,475 | INFO     | [payload] failed_post thread has finished
[2025-07-27 20:21:08] 2025-07-27 18:20:40,527 | INFO     | [job] control thread has finished
[2025-07-27 20:21:08] 2025-07-27 18:20:40,562 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 20:21:08] 2025-07-27 18:20:40,871 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 20:21:08] 2025-07-27 18:20:40,899 | INFO     | [job] validate thread has finished
[2025-07-27 20:21:08] 2025-07-27 18:20:40,967 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 20:21:08] 2025-07-27 18:20:41,007 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 20:21:08] 2025-07-27 18:20:41,266 | INFO     | [data] copytool_in thread has finished
[2025-07-27 20:21:08] 2025-07-27 18:20:41,315 | INFO     | [payload] validate_post thread has finished
[2025-07-27 20:21:08] 2025-07-27 18:20:41,803 | INFO     | [data] copytool_out thread has finished
[2025-07-27 20:21:08] 2025-07-27 18:20:44,567 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 20:21:08] 2025-07-27 18:20:49,011 | INFO     | job.realtimelogging is not enabled
[2025-07-27 20:21:08] 2025-07-27 18:20:50,015 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 20:21:08] 2025-07-27 18:20:51,447 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140554734974784)>', '<ExcThread(monitor, started 140554239190784)>']
[2025-07-27 20:21:08] 2025-07-27 18:20:56,472 | INFO     | all workflow threads have been joined
[2025-07-27 20:21:08] 2025-07-27 18:20:56,472 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 20:21:08] 2025-07-27 18:20:56,472 | INFO     | traces error code: 0
[2025-07-27 20:21:08] 2025-07-27 18:20:56,472 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 20:21:08] 2025-07-27 18:21:08,621 | INFO     | PID=1404994 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 20:21:08] 2025-07-27 18:21:08,622 | INFO     | .. there are 4 such processes running
[2025-07-27 20:21:08] 2025-07-27 18:21:08,636 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 20:21:08] 2025-07-27 18:21:08,636 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 20:21:08] 2025-07-27 18:21:08,636 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 20:21:08] 2025-07-27 18:21:08,636 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 20:21:08] 2025-07-27 18:21:08,636 | INFO     | [monitor] control thread has ended
[2025-07-27 20:21:08] 2025-07-27 18:21:08,693 [wrapper] ==== pilot stdout END ====
[2025-07-27 20:21:08] 2025-07-27 18:21:08,694 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 20:21:08] 2025-07-27 18:21:08,695 [wrapper] pilotpid: 1404994
[2025-07-27 20:21:08] 2025-07-27 18:21:08,696 [wrapper] Pilot exit status: 0
[2025-07-27 20:21:08] 2025-07-27 18:21:08,701 [wrapper] pandaids: 6746386459
[2025-07-27 20:21:08] 2025-07-27 18:21:08,715 [wrapper] cleanup supervisor_pilot 1497826 1404995
[2025-07-27 20:21:08] 2025-07-27 18:21:08,716 [wrapper] Test setup, not cleaning
[2025-07-27 20:21:08] 2025-07-27 18:21:08,717 [wrapper] apfmon messages muted
[2025-07-27 20:21:08] 2025-07-27 18:21:08,718 [wrapper] ==== wrapper stdout END ====
[2025-07-27 20:21:08] 2025-07-27 18:21:08,720 [wrapper] ==== wrapper stderr END ====
[2025-07-27 20:21:08]  *** Error codes and diagnostics ***
[2025-07-27 20:21:08]     "exeErrorCode": 0,
[2025-07-27 20:21:08]     "exeErrorDiag": "",
[2025-07-27 20:21:08]     "pilotErrorCode": 0,
[2025-07-27 20:21:08]     "pilotErrorDiag": "",
[2025-07-27 20:21:08]  *** Listing of results directory ***
[2025-07-27 20:21:08] total 420444
[2025-07-27 20:21:08] -rw-r--r-- 1 boinc boinc    530466 Jul 27 09:22 pilot3.tar.gz
[2025-07-27 20:21:08] -rw-r--r-- 1 boinc boinc      5112 Jul 27 09:39 queuedata.json
[2025-07-27 20:21:08] -rwx------ 1 boinc boinc     36292 Jul 27 09:40 runpilot2-wrapper.sh
[2025-07-27 20:21:08] -rw-r--r-- 1 boinc boinc       100 Jul 27 18:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 20:21:08] -rwxr-xr-x 1 boinc boinc      7986 Jul 27 18:45 run_atlas
[2025-07-27 20:21:08] -rw-r--r-- 1 boinc boinc       105 Jul 27 18:45 job.xml
[2025-07-27 20:21:08] -rw-r--r-- 1 boinc boinc      9223 Jul 27 18:45 init_data.xml
[2025-07-27 20:21:08] -rw-r--r-- 2 boinc boinc 244704145 Jul 27 18:45 EVNT.45758373._000004.pool.root.1
[2025-07-27 20:21:08] -rw-r--r-- 2 boinc boinc     15095 Jul 27 18:45 start_atlas.sh
[2025-07-27 20:21:08] drwxrwx--x 2 boinc boinc      4096 Jul 27 18:45 shared
[2025-07-27 20:21:08] -rw-r--r-- 2 boinc boinc    542881 Jul 27 18:45 input.tar.gz
[2025-07-27 20:21:08] -rw-r--r-- 1 boinc boinc         0 Jul 27 18:45 boinc_lockfile
[2025-07-27 20:21:08] -rw-r--r-- 1 boinc boinc      2556 Jul 27 18:45 pandaJob.out
[2025-07-27 20:21:08] -rw------- 1 boinc boinc    980125 Jul 27 18:45 agis_schedconf.cvmfs.json
[2025-07-27 20:21:08] -rw------- 1 boinc boinc   1593052 Jul 27 18:45 agis_ddmendpoints.agis.ALL.json
[2025-07-27 20:21:08] drwx------ 4 boinc boinc      4096 Jul 27 18:45 pilot3
[2025-07-27 20:21:08] -rw------- 1 boinc boinc 180286756 Jul 27 20:20 HITS.45758375._000097.pool.root.1
[2025-07-27 20:21:08] -rw------- 1 boinc boinc      1019 Jul 27 20:20 memory_monitor_summary.json
[2025-07-27 20:21:08] -rw------- 1 boinc boinc    266204 Jul 27 20:20 log.45758375._000097.job.log.tgz.1
[2025-07-27 20:21:08] -rw-r--r-- 1 boinc boinc       529 Jul 27 20:20 boinc_task_state.xml
[2025-07-27 20:21:08] -rw------- 1 boinc boinc      7745 Jul 27 20:20 heartbeat.json
[2025-07-27 20:21:08] -rw-r--r-- 1 boinc boinc      8192 Jul 27 20:21 boinc_mmap_file
[2025-07-27 20:21:08] -rw-r--r-- 1 boinc boinc        27 Jul 27 20:21 wrapper_checkpoint.txt
[2025-07-27 20:21:08] -rw------- 1 boinc boinc        95 Jul 27 20:21 pilot_heartbeat.json
[2025-07-27 20:21:08] -rw------- 1 boinc boinc       822 Jul 27 20:21 pilotlog.txt
[2025-07-27 20:21:08] -rw------- 1 boinc boinc    565033 Jul 27 20:21 log.45758375._000097.job.log.1
[2025-07-27 20:21:08] -rw-r--r-- 1 boinc boinc       620 Jul 27 20:21 runtime_log
[2025-07-27 20:21:08] -rw------- 1 boinc boinc       357 Jul 27 20:21 output.list
[2025-07-27 20:21:08] -rw------- 1 boinc boinc    849920 Jul 27 20:21 result.tar.gz
[2025-07-27 20:21:08] -rw-r--r-- 1 boinc boinc      8783 Jul 27 20:21 runtime_log.err
[2025-07-27 20:21:08] -rw------- 1 boinc boinc       655 Jul 27 20:21 pHmNDmuAB07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmCfULDmRTFiIn.diag
[2025-07-27 20:21:08] -rw-r--r-- 1 boinc boinc     21798 Jul 27 20:21 stderr.txt
[2025-07-27 20:21:08] HITS file was successfully produced:
[2025-07-27 20:21:08] -rw------- 1 boinc boinc 180286756 Jul 27 20:20 shared/HITS.pool.root.1
[2025-07-27 20:21:08]  *** Contents of shared directory: ***
[2025-07-27 20:21:08] total 416424
[2025-07-27 20:21:08] -rw-r--r-- 2 boinc boinc 244704145 Jul 27 18:45 ATLAS.root_0
[2025-07-27 20:21:08] -rw-r--r-- 2 boinc boinc     15095 Jul 27 18:45 start_atlas.sh
[2025-07-27 20:21:08] -rw-r--r-- 2 boinc boinc    542881 Jul 27 18:45 input.tar.gz
[2025-07-27 20:21:08] -rw------- 1 boinc boinc 180286756 Jul 27 20:20 HITS.pool.root.1
[2025-07-27 20:21:08] -rw------- 1 boinc boinc    849920 Jul 27 20:21 result.tar.gz
20:21:09 (1401310): run_atlas exited; CPU time 22141.629715
20:21:09 (1401310): called boinc_finish(0)

</stderr_txt>
]]>

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