Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:37:45 (285942): wrapper (7.7.26015): starting
13:37:45 (285942): wrapper: running run_atlas (--nthreads 6)
[2025-07-28 13:37:45] Arguments: --nthreads 6
[2025-07-28 13:37:45] Threads: 6
[2025-07-28 13:37:45] Checking for CVMFS
[2025-07-28 13:37:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 13:37:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 13:37:45] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 13:37:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 13:37:45] 2.13.1.0 77746 9017 80972 148836 3 57 44145974 52428800 922 130560 0 11525159 99.994 316442 163 http://s1ihep-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-07-28 13:37:45] CVMFS is ok
[2025-07-28 13:37:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 13:37:45] Small home clusters do not require a local http proxy but it is suggested if
[2025-07-28 13:37:45] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-07-28 13:37:45] Further information can be found at the LHC@home message board.
[2025-07-28 13:37:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 13:37:45] Checking for apptainer binary...
[2025-07-28 13:37:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 13:37:45] Running /usr/bin/apptainer --version
[2025-07-28 13:37:45] apptainer version 1.4.1-1.el9
[2025-07-28 13:37:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 13:37:45] Atto003
[2025-07-28 13:37:45] apptainer works
[2025-07-28 13:37:45] Set ATHENA_PROC_NUMBER=6
[2025-07-28 13:37:45] Set ATHENA_CORE_NUMBER=6
[2025-07-28 13:37:45] Starting ATLAS job with PandaID=6747152430
[2025-07-28 13:37:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 15:07:29]  *** The last 200 lines of the pilot log: ***
[2025-07-28 15:07:29]  status_code=0
[2025-07-28 15:07:29]  storage_token=
[2025-07-28 15:07:29]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-6747152430/log.45743349._046640.job.log.tgz.1
[2025-07-28 15:07:29]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/95/77/log.45743349._046640.job.log.tgz.1
[2025-07-28 15:07:29]  workdir=None
[2025-07-28 15:07:29] ]
[2025-07-28 15:07:29] 2025-07-28 06:06:43,727 | INFO     | transferring file log.45743349._046640.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6747152430/log.45743349._046640.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-07-28 15:07:29] 2025-07-28 06:06:43,727 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6747152430/log.45743349._046640.job.log.tgz.1 /var/lib/boinc/slots/0/log.45743349._046640.job
[2025-07-28 15:07:29] 2025-07-28 06:06:43,733 | INFO     | adding to output.list: log.45743349._046640.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/95/77/log.45743349._046640.job.log.tg
[2025-07-28 15:07:29] 2025-07-28 06:06:43,733 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 15:07:29] 2025-07-28 06:06:43,733 | INFO     | summary of transferred files:
[2025-07-28 15:07:29] 2025-07-28 06:06:43,733 | INFO     |  -- lfn=log.45743349._046640.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 15:07:29] 2025-07-28 06:06:43,733 | INFO     | stage-out finished correctly
[2025-07-28 15:07:29] 2025-07-28 06:06:45,873 | WARNING  | process 296229 can no longer be monitored (due to stat problems) - aborting
[2025-07-28 15:07:29] 2025-07-28 06:06:45,873 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6747152430/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 15:07:29] 2025-07-28 06:06:45,917 | INFO     | number of running child processes to parent process 296229: 1
[2025-07-28 15:07:29] 2025-07-28 06:06:45,917 | INFO     | maximum number of monitored processes: 6
[2025-07-28 15:07:29] 2025-07-28 06:06:46,879 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 15:07:29] 2025-07-28 06:06:46,940 | INFO     | job 6747152430 has state=finished
[2025-07-28 15:07:29] 2025-07-28 06:06:46,940 | INFO     | preparing for final server update for job 6747152430 in state='finished'
[2025-07-28 15:07:29] 2025-07-28 06:06:46,941 | INFO     | this job has now completed (state=finished)
[2025-07-28 15:07:29] 2025-07-28 06:06:46,941 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 15:07:29] 2025-07-28 06:06:46,941 | INFO     | log transfer has been attempted: DONE
[2025-07-28 15:07:29] 2025-07-28 06:06:46,941 | INFO     | job 6747152430 has finished - writing final server update
[2025-07-28 15:07:29] 2025-07-28 06:06:46,941 | INFO     | total number of processed events: 400 (read)
[2025-07-28 15:07:29] 2025-07-28 06:06:46,942 | INFO     | executing command: lscpu
[2025-07-28 15:07:29] 2025-07-28 06:06:46,955 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 15:07:29] 2025-07-28 06:06:48,425 | INFO     | monitor loop #405: job 0:6747152430 is in state 'finished'
[2025-07-28 15:07:29] 2025-07-28 06:06:48,425 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 15:07:29] 2025-07-28 06:06:50,927 | INFO     | monitor loop #406: job 0:6747152430 is in state 'finished'
[2025-07-28 15:07:29] 2025-07-28 06:06:50,927 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 15:07:29] 2025-07-28 06:06:53,429 | INFO     | monitor loop #407: job 0:6747152430 is in state 'finished'
[2025-07-28 15:07:29] 2025-07-28 06:06:53,429 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 15:07:29] 2025-07-28 06:06:55,931 | INFO     | monitor loop #408: job 0:6747152430 is in state 'finished'
[2025-07-28 15:07:29] 2025-07-28 06:06:55,931 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 15:07:29] 2025-07-28 06:06:57,717 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-28 15:07:29] 2025-07-28 06:06:57,719 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3800.2238749999997
[2025-07-28 15:07:29] 2025-07-28 06:06:57,721 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6747152430/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 15:07:29] 2025-07-28 06:06:57,721 | INFO     | extracted standard info from prmon json
[2025-07-28 15:07:29] 2025-07-28 06:06:57,721 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 15:07:29] 2025-07-28 06:06:57,721 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 15:07:29] 2025-07-28 06:06:57,722 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 15:07:29] 2025-07-28 06:06:57,722 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 15:07:29] 2025-07-28 06:06:57,723 | INFO     | fitting pss+swap vs Time
[2025-07-28 15:07:29] 2025-07-28 06:06:57,723 | INFO     | sum of square deviations: 158737860.0
[2025-07-28 15:07:29] 2025-07-28 06:06:57,723 | INFO     | sum of deviations: 2439051084.0
[2025-07-28 15:07:29] 2025-07-28 06:06:57,724 | INFO     | mean x: 1753680242.5
[2025-07-28 15:07:29] 2025-07-28 06:06:57,724 | INFO     | mean y: 2499909.375
[2025-07-28 15:07:29] 2025-07-28 06:06:57,724 | INFO     | -- intersect: -26943281622.888367
[2025-07-28 15:07:29] 2025-07-28 06:06:57,724 | INFO     | intersect: -26943281622.888367
[2025-07-28 15:07:29] 2025-07-28 06:06:57,724 | INFO     | chi2: 1.5251323349801311
[2025-07-28 15:07:29] 2025-07-28 06:06:57,724 | INFO     | -- intersect: -26943281622.888367
[2025-07-28 15:07:29] 2025-07-28 06:06:57,724 | INFO     | current memory leak: 15.37 B/s (using 80 data points, chi2=1.53)
[2025-07-28 15:07:29] 2025-07-28 06:06:57,724 | INFO     | could have reported an average CPU frequency of 3784 MHz (6 samples)
[2025-07-28 15:07:29] 2025-07-28 06:06:57,724 | INFO     | ..............................
[2025-07-28 15:07:29] 2025-07-28 06:06:57,724 | INFO     | . Timing measurements:
[2025-07-28 15:07:29] 2025-07-28 06:06:57,725 | INFO     | . get job = 0 s
[2025-07-28 15:07:29] 2025-07-28 06:06:57,725 | INFO     | . initial setup = 39 s
[2025-07-28 15:07:29] 2025-07-28 06:06:57,725 | INFO     | . payload setup = 3 s
[2025-07-28 15:07:29] 2025-07-28 06:06:57,725 | INFO     | . stage-in = 0 s
[2025-07-28 15:07:29] 2025-07-28 06:06:57,725 | INFO     | . payload execution = 5274 s
[2025-07-28 15:07:29] 2025-07-28 06:06:57,725 | INFO     | . stage-out = 0 s
[2025-07-28 15:07:29] 2025-07-28 06:06:57,725 | INFO     | . log creation = 0 s
[2025-07-28 15:07:29] 2025-07-28 06:06:57,725 | INFO     | ..............................
[2025-07-28 15:07:29] 2025-07-28 06:06:57,764 | INFO     | 
[2025-07-28 15:07:29] 2025-07-28 06:06:57,764 | INFO     | job summary report
[2025-07-28 15:07:29] 2025-07-28 06:06:57,764 | INFO     | --------------------------------------------------
[2025-07-28 15:07:29] 2025-07-28 06:06:57,764 | INFO     | PanDA job id: 6747152430
[2025-07-28 15:07:29] 2025-07-28 06:06:57,764 | INFO     | task id: 45743349
[2025-07-28 15:07:29] 2025-07-28 06:06:57,764 | INFO     | errors: (none)
[2025-07-28 15:07:29] 2025-07-28 06:06:57,764 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 15:07:29] 2025-07-28 06:06:57,765 | INFO     | pilot state: finished 
[2025-07-28 15:07:29] 2025-07-28 06:06:57,765 | INFO     | transexitcode: 0
[2025-07-28 15:07:29] 2025-07-28 06:06:57,765 | INFO     | exeerrorcode: 0
[2025-07-28 15:07:29] 2025-07-28 06:06:57,765 | INFO     | exeerrordiag: 
[2025-07-28 15:07:29] 2025-07-28 06:06:57,765 | INFO     | exitcode: 0
[2025-07-28 15:07:29] 2025-07-28 06:06:57,765 | INFO     | exitmsg: OK
[2025-07-28 15:07:29] 2025-07-28 06:06:57,765 | INFO     | cpuconsumptiontime: 27124 s
[2025-07-28 15:07:29] 2025-07-28 06:06:57,765 | INFO     | nevents: 400
[2025-07-28 15:07:29] 2025-07-28 06:06:57,765 | INFO     | neventsw: 0
[2025-07-28 15:07:29] 2025-07-28 06:06:57,765 | INFO     | pid: 296229
[2025-07-28 15:07:29] 2025-07-28 06:06:57,765 | INFO     | pgrp: 296229
[2025-07-28 15:07:29] 2025-07-28 06:06:57,765 | INFO     | corecount: 6
[2025-07-28 15:07:29] 2025-07-28 06:06:57,765 | INFO     | event service: False
[2025-07-28 15:07:29] 2025-07-28 06:06:57,765 | INFO     | sizes: {0: 2396597, 1: 2397453, 3: 2397715, 11: 2397743, 5280: 2424314, 5281: 2433495, 5285: 2433495, 5295: 2433689}
[2025-07-28 15:07:29] 2025-07-28 06:06:57,765 | INFO     | --------------------------------------------------
[2025-07-28 15:07:29] 2025-07-28 06:06:57,765 | INFO     | 
[2025-07-28 15:07:29] 2025-07-28 06:06:57,766 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-07-28 15:07:29] 2025-07-28 06:06:57,773 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 15:07:29] 2025-07-28 06:06:57,774 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 15:07:29] 2025-07-28 06:06:57,774 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 15:07:29] 2025-07-28 06:06:57,774 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 15:07:29] 2025-07-28 06:06:57,774 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 15:07:29] 2025-07-28 06:06:57,774 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 15:07:29] 2025-07-28 06:06:57,774 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 15:07:29] 2025-07-28 06:06:57,774 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 15:07:29] 2025-07-28 06:06:57,774 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 15:07:29] 2025-07-28 06:06:57,774 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 15:07:29] 2025-07-28 06:06:57,774 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 15:07:29] 2025-07-28 06:06:57,774 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 15:07:29] 2025-07-28 06:06:57,774 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 15:07:29] 2025-07-28 06:06:57,774 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 15:07:29] 2025-07-28 06:06:57,774 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 15:07:29] 2025-07-28 06:06:57,774 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 15:07:29] 2025-07-28 06:06:57,775 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 15:07:29] 2025-07-28 06:06:57,775 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 15:07:29] 2025-07-28 06:06:57,775 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 15:07:29] 2025-07-28 06:06:57,775 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 15:07:29] 2025-07-28 06:06:57,775 | INFO     | job 6747152430 has completed (purged errors)
[2025-07-28 15:07:29] 2025-07-28 06:06:57,775 | INFO     | overall cleanup function is called
[2025-07-28 15:07:29] 2025-07-28 06:06:58,781 | INFO     | --- collectZombieJob: --- 10, [296229]
[2025-07-28 15:07:29] 2025-07-28 06:06:58,781 | INFO     | zombie collector waiting for pid 296229
[2025-07-28 15:07:29] 2025-07-28 06:06:58,781 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 15:07:29] 2025-07-28 06:06:58,781 | INFO     | collected zombie processes
[2025-07-28 15:07:29] 2025-07-28 06:06:58,781 | INFO     | will attempt to kill all subprocesses of pid=296229
[2025-07-28 15:07:29] 2025-07-28 06:06:58,852 | INFO     | process IDs to be killed: [296229] (in reverse order)
[2025-07-28 15:07:29] 2025-07-28 06:06:58,870 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 15:07:29] 2025-07-28 06:06:58,870 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 15:07:29] 2025-07-28 06:06:58,871 | INFO     | did not find any defunct processes belonging to 296229
[2025-07-28 15:07:29] 2025-07-28 06:06:58,872 | INFO     | did not find any defunct processes belonging to 296229
[2025-07-28 15:07:29] 2025-07-28 06:06:58,872 | INFO     | ready for new job
[2025-07-28 15:07:29] 2025-07-28 06:06:58,872 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 15:07:29] 2025-07-28 06:06:58,873 | INFO     | ***************************************
[2025-07-28 15:07:29] 2025-07-28 06:06:58,873 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 15:07:29] 2025-07-28 06:06:58,873 | INFO     | ***************************************
[2025-07-28 15:07:29] 2025-07-28 06:06:58,873 | INFO     | 
[2025-07-28 15:07:29] 2025-07-28 06:06:58,873 | INFO     | architecture information:
[2025-07-28 15:07:29] 2025-07-28 06:06:58,874 | INFO     | executing command: cat /etc/os-release
[2025-07-28 15:07:29] 2025-07-28 06:06:58,879 | INFO     | cat /etc/os-release:
[2025-07-28 15:07:29] NAME="CentOS Linux"
[2025-07-28 15:07:29] VERSION="7 (Core)"
[2025-07-28 15:07:29] ID="centos"
[2025-07-28 15:07:29] ID_LIKE="rhel fedora"
[2025-07-28 15:07:29] VERSION_ID="7"
[2025-07-28 15:07:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 15:07:29] ANSI_COLOR="0;31"
[2025-07-28 15:07:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 15:07:29] HOME_URL="https://www.centos.org/"
[2025-07-28 15:07:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 15:07:29] 
[2025-07-28 15:07:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 15:07:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 15:07:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 15:07:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 15:07:29] 
[2025-07-28 15:07:29] 2025-07-28 06:06:58,879 | INFO     | ***************************************
[2025-07-28 15:07:29] 2025-07-28 06:06:59,382 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-07-28 15:07:29] 2025-07-28 06:06:59,389 | INFO     | sufficient remaining disk space (98229551104 B)
[2025-07-28 15:07:29] 2025-07-28 06:06:59,389 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 15:07:29] 2025-07-28 06:06:59,389 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 15:07:29] 2025-07-28 06:06:59,389 | INFO     | update_server=False
[2025-07-28 15:07:29] 2025-07-28 06:06:59,389 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 15:07:29] 2025-07-28 06:06:59,389 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 15:07:29] 2025-07-28 06:06:59,389 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 15:07:29] 2025-07-28 06:06:59,439 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 15:07:29] 2025-07-28 06:06:59,439 | INFO     | aborting loop
[2025-07-28 15:07:29] 2025-07-28 06:06:59,542 | INFO     | all job control threads have been joined
[2025-07-28 15:07:29] 2025-07-28 06:07:00,135 | INFO     | all payload control threads have been joined
[2025-07-28 15:07:29] 2025-07-28 06:07:00,287 | INFO     | all data control threads have been joined
[2025-07-28 15:07:29] 2025-07-28 06:07:00,394 | INFO     | [job] retrieve thread has finished
[2025-07-28 15:07:29] 2025-07-28 06:07:00,395 | INFO     | [job] queue monitor thread has finished
[2025-07-28 15:07:29] 2025-07-28 06:07:00,422 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 15:07:29] 2025-07-28 06:07:00,444 | INFO     | [job] job monitor thread has finished
[2025-07-28 15:07:29] 2025-07-28 06:07:00,547 | INFO     | [job] control thread has finished
[2025-07-28 15:07:29] 2025-07-28 06:07:00,916 | INFO     | [data] copytool_in thread has finished
[2025-07-28 15:07:29] 2025-07-28 06:07:00,960 | INFO     | [payload] failed_post thread has finished
[2025-07-28 15:07:29] 2025-07-28 06:07:01,140 | INFO     | [payload] control thread has finished
[2025-07-28 15:07:29] 2025-07-28 06:07:01,292 | INFO     | [data] control thread has finished
[2025-07-28 15:07:29] 2025-07-28 06:07:01,395 | INFO     | [data] copytool_out thread has finished
[2025-07-28 15:07:29] 2025-07-28 06:07:01,573 | INFO     | [payload] validate_post thread has finished
[2025-07-28 15:07:29] 2025-07-28 06:07:01,634 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 15:07:29] 2025-07-28 06:07:01,728 | INFO     | [job] validate thread has finished
[2025-07-28 15:07:29] 2025-07-28 06:07:01,894 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 15:07:29] 2025-07-28 06:07:01,950 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 15:07:29] 2025-07-28 06:07:05,955 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 15:07:29] 2025-07-28 06:07:09,933 | INFO     | job.realtimelogging is not enabled
[2025-07-28 15:07:29] 2025-07-28 06:07:10,939 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 15:07:29] 2025-07-28 06:07:12,412 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139669869987648)>', '<ExcThread(monitor, started 139669241063168)>']
[2025-07-28 15:07:29] 2025-07-28 06:07:17,437 | INFO     | all workflow threads have been joined
[2025-07-28 15:07:29] 2025-07-28 06:07:17,438 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 15:07:29] 2025-07-28 06:07:17,438 | INFO     | traces error code: 0
[2025-07-28 15:07:29] 2025-07-28 06:07:17,438 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 15:07:29] 2025-07-28 06:07:29,497 | INFO     | PID=289669 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-28 15:07:29] 2025-07-28 06:07:29,497 | INFO     | .. there are 2 such processes running
[2025-07-28 15:07:29] 2025-07-28 06:07:29,497 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 15:07:29] 2025-07-28 06:07:29,497 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 15:07:29] 2025-07-28 06:07:29,497 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 15:07:29] 2025-07-28 06:07:29,497 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 15:07:29] 2025-07-28 06:07:29,497 | CRITICAL | thread 'MainThread' is not alive
[2025-07-28 15:07:29] 2025-07-28 06:07:29,497 | INFO     | [monitor] control thread has ended
[2025-07-28 15:07:29] 2025-07-28 06:07:29,542 [wrapper] ==== pilot stdout END ====
[2025-07-28 15:07:29] 2025-07-28 06:07:29,543 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 15:07:29] 2025-07-28 06:07:29,544 [wrapper] pilotpid: 289669
[2025-07-28 15:07:29] 2025-07-28 06:07:29,545 [wrapper] Pilot exit status: 0
[2025-07-28 15:07:29] 2025-07-28 06:07:29,548 [wrapper] pandaids: 6747152430
[2025-07-28 15:07:29] 2025-07-28 06:07:29,559 [wrapper] cleanup supervisor_pilot  331976 289670
[2025-07-28 15:07:29] 2025-07-28 06:07:29,560 [wrapper] Test setup, not cleaning
[2025-07-28 15:07:29] 2025-07-28 06:07:29,561 [wrapper] apfmon messages muted
[2025-07-28 15:07:29] 2025-07-28 06:07:29,562 [wrapper] ==== wrapper stdout END ====
[2025-07-28 15:07:29] 2025-07-28 06:07:29,563 [wrapper] ==== wrapper stderr END ====
[2025-07-28 15:07:29]  *** Error codes and diagnostics ***
[2025-07-28 15:07:29]     "exeErrorCode": 0,
[2025-07-28 15:07:29]     "exeErrorDiag": "",
[2025-07-28 15:07:29]     "pilotErrorCode": 0,
[2025-07-28 15:07:29]     "pilotErrorDiag": "",
[2025-07-28 15:07:29]  *** Listing of results directory ***
[2025-07-28 15:07:29] total 350588
[2025-07-28 15:07:29] -rw-r--r--. 1 boinc boinc    530466 Jul 27 18:06 pilot3.tar.gz
[2025-07-28 15:07:29] -rwx------. 1 boinc boinc     36292 Jul 27 18:46 runpilot2-wrapper.sh
[2025-07-28 15:07:29] -rw-r--r--. 1 boinc boinc      5112 Jul 27 18:46 queuedata.json
[2025-07-28 15:07:29] -rw-r--r--. 1 boinc boinc       100 Jul 28 13:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 15:07:29] -rwxr-xr-x. 1 boinc boinc      7986 Jul 28 13:37 run_atlas
[2025-07-28 15:07:29] -rw-r--r--. 1 boinc boinc       105 Jul 28 13:37 job.xml
[2025-07-28 15:07:29] -rw-r--r--. 1 boinc boinc      9344 Jul 28 13:37 init_data.xml
[2025-07-28 15:07:29] -rw-r--r--. 2 boinc boinc 145503926 Jul 28 13:37 EVNT.45743347._001668.pool.root.1
[2025-07-28 15:07:29] drwxrwx--x. 2 boinc boinc        68 Jul 28 13:37 shared
[2025-07-28 15:07:29] -rw-r--r--. 2 boinc boinc    542902 Jul 28 13:37 input.tar.gz
[2025-07-28 15:07:29] -rw-r--r--. 2 boinc boinc     15095 Jul 28 13:37 start_atlas.sh
[2025-07-28 15:07:29] -rw-r--r--. 1 boinc boinc         0 Jul 28 13:37 boinc_lockfile
[2025-07-28 15:07:29] -rw-r--r--. 1 boinc boinc      2563 Jul 28 13:37 pandaJob.out
[2025-07-28 15:07:29] -rw-------. 1 boinc boinc    980125 Jul 28 13:37 agis_schedconf.cvmfs.json
[2025-07-28 15:07:29] -rw-------. 1 boinc boinc   1593052 Jul 28 13:38 agis_ddmendpoints.agis.ALL.json
[2025-07-28 15:07:29] drwx------. 4 boinc boinc      4096 Jul 28 13:38 pilot3
[2025-07-28 15:07:29] -rw-------. 1 boinc boinc 208010124 Jul 28 15:06 HITS.45743349._046640.pool.root.1
[2025-07-28 15:07:29] -rw-r--r--. 1 boinc boinc       529 Jul 28 15:06 boinc_task_state.xml
[2025-07-28 15:07:29] -rw-------. 1 boinc boinc      1016 Jul 28 15:06 memory_monitor_summary.json
[2025-07-28 15:07:29] -rw-------. 1 boinc boinc    282730 Jul 28 15:06 log.45743349._046640.job.log.tgz.1
[2025-07-28 15:07:29] -rw-------. 1 boinc boinc      7771 Jul 28 15:06 heartbeat.json
[2025-07-28 15:07:29] -rw-r--r--. 1 boinc boinc      8192 Jul 28 15:07 boinc_mmap_file
[2025-07-28 15:07:29] -rw-r--r--. 1 boinc boinc        27 Jul 28 15:07 wrapper_checkpoint.txt
[2025-07-28 15:07:29] -rw-------. 1 boinc boinc       891 Jul 28 15:07 pilotlog.txt
[2025-07-28 15:07:29] -rw-------. 1 boinc boinc        95 Jul 28 15:07 pilot_heartbeat.json
[2025-07-28 15:07:29] -rw-------. 1 boinc boinc    525313 Jul 28 15:07 log.45743349._046640.job.log.1
[2025-07-28 15:07:29] -rw-------. 1 boinc boinc       357 Jul 28 15:07 output.list
[2025-07-28 15:07:29] -rw-r--r--. 1 boinc boinc       620 Jul 28 15:07 runtime_log
[2025-07-28 15:07:29] -rw-------. 1 boinc boinc    829440 Jul 28 15:07 result.tar.gz
[2025-07-28 15:07:29] -rw-------. 1 boinc boinc       638 Jul 28 15:07 WReMDmT8C07n9Rq4apOajLDm4fhM0noT9bVof3QYDmaM2KDmsLXppm.diag
[2025-07-28 15:07:29] -rw-r--r--. 1 boinc boinc      8608 Jul 28 15:07 runtime_log.err
[2025-07-28 15:07:29] -rw-r--r--. 1 boinc boinc     22167 Jul 28 15:07 stderr.txt
[2025-07-28 15:07:29] HITS file was successfully produced:
[2025-07-28 15:07:29] -rw-------. 1 boinc boinc 208010124 Jul 28 15:06 shared/HITS.pool.root.1
[2025-07-28 15:07:29]  *** Contents of shared directory: ***
[2025-07-28 15:07:29] total 346592
[2025-07-28 15:07:29] -rw-r--r--. 2 boinc boinc 145503926 Jul 28 13:37 ATLAS.root_0
[2025-07-28 15:07:29] -rw-r--r--. 2 boinc boinc    542902 Jul 28 13:37 input.tar.gz
[2025-07-28 15:07:29] -rw-r--r--. 2 boinc boinc     15095 Jul 28 13:37 start_atlas.sh
[2025-07-28 15:07:29] -rw-------. 1 boinc boinc 208010124 Jul 28 15:06 HITS.pool.root.1
[2025-07-28 15:07:29] -rw-------. 1 boinc boinc    829440 Jul 28 15:07 result.tar.gz
15:07:31 (285942): run_atlas exited; CPU time 27181.983174
15:07:31 (285942): called boinc_finish(0)

</stderr_txt>
]]>

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