Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:35:49 (1932735): wrapper (7.7.26015): starting
05:35:49 (1932735): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 05:35:49] Arguments: --nthreads 12
[2025-07-27 05:35:49] Threads: 12
[2025-07-27 05:35:49] Checking for CVMFS
[2025-07-27 05:35:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 05:35:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 05:35:50] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 05:35:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 05:35:50] 2.11.5.0 7890 37149 327412 148812 1 374 31207267 45568000 22552 130560 0 241749966 99.716 194588255 22296 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-07-27 05:35:50] CVMFS is ok
[2025-07-27 05:35:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 05:35:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 05:35:50] Further information can be found at the LHC@home message board.
[2025-07-27 05:35:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 05:35:50] Checking for apptainer binary...
[2025-07-27 05:35:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 05:35:50] Running /usr/bin/apptainer --version
[2025-07-27 05:35:50] apptainer version 1.4.1-1.el9
[2025-07-27 05:35:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 05:35:50] wns0052.triumf.lcg
[2025-07-27 05:35:50] apptainer works
[2025-07-27 05:35:50] Set ATHENA_PROC_NUMBER=12
[2025-07-27 05:35:50] Set ATHENA_CORE_NUMBER=12
[2025-07-27 05:35:50] Starting ATLAS job with PandaID=6747128530
[2025-07-27 05:35:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 05:39:35]  *** The last 200 lines of the pilot log: ***
[2025-07-27 05:39:35] 2025-07-27 12:39:02,180 | INFO     | will not add max space = 0 B to job metrics
[2025-07-27 05:39:35] 2025-07-27 12:39:02,180 | WARNING  | wrong length of table data, x=[1753619798.0], y=[1990.0] (must be same and length>=4)
[2025-07-27 05:39:35] 2025-07-27 12:39:02,180 | INFO     | could have reported an average CPU frequency of 2081 MHz (4 samples)
[2025-07-27 05:39:35] 2025-07-27 12:39:02,181 | INFO     | ..............................
[2025-07-27 05:39:35] 2025-07-27 12:39:02,181 | INFO     | . Timing measurements:
[2025-07-27 05:39:35] 2025-07-27 12:39:02,181 | INFO     | . get job = 0 s
[2025-07-27 05:39:35] 2025-07-27 12:39:02,181 | INFO     | . initial setup = 3 s
[2025-07-27 05:39:35] 2025-07-27 12:39:02,181 | INFO     | . payload setup = 8 s
[2025-07-27 05:39:35] 2025-07-27 12:39:02,181 | INFO     | . stage-in = 0 s
[2025-07-27 05:39:35] 2025-07-27 12:39:02,181 | INFO     | . payload execution = 23 s
[2025-07-27 05:39:35] 2025-07-27 12:39:02,181 | INFO     | . stage-out = 0 s
[2025-07-27 05:39:35] 2025-07-27 12:39:02,181 | INFO     | . log creation = 0 s
[2025-07-27 05:39:35] 2025-07-27 12:39:02,181 | INFO     | ..............................
[2025-07-27 05:39:35] 2025-07-27 12:39:02,181 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-27 05:39:35] 2025-07-27 12:39:02,182 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6747128530/pilotlog.txt
[2025-07-27 05:39:35] 2025-07-27 12:39:02,204 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-07-27 05:39:35] - Log from pilotlog.txt -
[2025-07-27 05:39:35] 2025-07-27 12:39:02,179 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 05:39:35] 2025-07-27 12:39:02,179 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 05:39:35] 2025-07-27 12:39:02,179 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 05:39:35] 2025-07-27 12:39:02,180 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 05:39:35] 2025-07-27 12:39:02,180 | WARNING  | found no stored workdir sizes
[2025-07-27 05:39:35] 2025-07-27 12:39:02,180 | INFO     | will not add max space = 0 B to job metrics
[2025-07-27 05:39:35] 2025-07-27 12:39:02,180 | WARNING  | wrong length of table data, x=[1753619798.0], y=[1990.0] (must be same and length>=4)
[2025-07-27 05:39:35] 2025-07-27 12:39:02,180 | INFO     | could have reported an average CPU frequency of 2081 MHz (4 samples)
[2025-07-27 05:39:35] 2025-07-27 12:39:02,181 | INFO     | ..............................
[2025-07-27 05:39:35] 2025-07-27 12:39:02,181 | INFO     | . Timing measurements:
[2025-07-27 05:39:35] 2025-07-27 12:39:02,181 | INFO     | . get job = 0 s
[2025-07-27 05:39:35] 2025-07-27 12:39:02,181 | INFO     | . initial setup = 3 s
[2025-07-27 05:39:35] 2025-07-27 12:39:02,181 | INFO     | . payload setup = 8 s
[2025-07-27 05:39:35] 2025-07-27 12:39:02,181 | INFO     | . stage-in = 0 s
[2025-07-27 05:39:35] 2025-07-27 12:39:02,181 | INFO     | . payload execution = 23 s
[2025-07-27 05:39:35] 2025-07-27 12:39:02,181 | INFO     | . stage-out = 0 s
[2025-07-27 05:39:35] 2025-07-27 12:39:02,181 | INFO     | . log creation = 0 s
[2025-07-27 05:39:35] 2025-07-27 12:39:02,181 | INFO     | ..............................
[2025-07-27 05:39:35] 2025-07-27 12:39:02,181 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-27 05:39:35] 2025-07-27 12:39:02,182 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6747128530/pilotlog.txt
[2025-07-27 05:39:35] 2025-07-27 12:39:02,205 | WARNING  | 
[2025-07-27 05:39:35] [begin log extracts]
[2025-07-27 05:39:35] - Log from pilotlog.txt -
[2025-07-27 05:39:35] 2025-07-27 12:39:02,179 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 05:39:35] 2025-07-27 12:39:02,179 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 05:39:35] 2025-07-27 12:39:02,179 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 05:39:35] 2025-07-27 12:39:02,180 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 05:39:35] 2025-07-27 12:39:02,180 | WARNING  | found no stored workdir sizes
[2025-07-27 05:39:35] 2025-07-27 12:39:02,180 | INFO     | will not add max space = 0 B to job metrics
[2025-07-27 05:39:35] 2025-07-27 12:39:02,180 | WARNING  | wrong length of table data, x=[1753619798.0], y=[1990.0] (must be same and length>=4)
[2025-07-27 05:39:35] 2025-07-27 12:39:02,180 | INFO     | could have reported an average CPU frequency of 2081 MHz (4 samples)
[2025-07-27 05:39:35] 2025-07-27 12:39:02,181 | INFO     | ..............................
[2025-07-27 05:39:35] 2025-07-27 12:39:02,181 | INFO     | . Timing measurements:
[2025-07-27 05:39:35] 2025-07-27 12:39:02,181 | INFO     | . get job = 0 s
[2025-07-27 05:39:35] 2025-07-27 12:39:02,181 | INFO     | . initial setup = 3 s
[2025-07-27 05:39:35] 2025-07-27 12:39:02,181 | INFO     | . payload setup = 8 s
[2025-07-27 05:39:35] 2025-07-27 12:39:02,181 | INFO     | . stage-in = 0 s
[2025-07-27 05:39:35] 2025-07-27 12:39:02,181 | INFO     | . payload execution = 23 s
[2025-07-27 05:39:35] 2025-07-27 12:39:02,181 | INFO     | . stage-out = 0 s
[2025-07-27 05:39:35] 2025-07-27 12:39:02,181 | INFO     | . log creation = 0 s
[2025-07-27 05:39:35] 2025-07-27 12:39:02,181 | INFO     | ..............................
[2025-07-27 05:39:35] 2025-07-27 12:39:02,181 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-27 05:39:35] 2025-07-27 12:39:02,182 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6747128530/pilotlog.txt
[2025-07-27 05:39:35] [end log extracts]
[2025-07-27 05:39:35] 2025-07-27 12:39:02,205 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-07-27 05:39:35] 2025-07-27 12:39:02,206 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-07-27 05:39:35] 2025-07-27 12:39:02,405 | INFO     | 
[2025-07-27 05:39:35] 2025-07-27 12:39:02,405 | INFO     | job summary report
[2025-07-27 05:39:35] 2025-07-27 12:39:02,405 | INFO     | --------------------------------------------------
[2025-07-27 05:39:35] 2025-07-27 12:39:02,405 | INFO     | PanDA job id: 6747128530
[2025-07-27 05:39:35] 2025-07-27 12:39:02,406 | INFO     | task id: 45743349
[2025-07-27 05:39:35] 2025-07-27 12:39:02,406 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-07-27 05:36:50,748 CRITICAL Transform executor raised TransformValidationExceptio
[2025-07-27 05:39:35] 2025-07-27 12:39:02,406 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 05:39:35] 2025-07-27 12:39:02,406 | INFO     | pilot state: failed 
[2025-07-27 05:39:35] 2025-07-27 12:39:02,406 | INFO     | transexitcode: 65
[2025-07-27 05:39:35] 2025-07-27 12:39:02,406 | INFO     | exeerrorcode: 65
[2025-07-27 05:39:35] 2025-07-27 12:39:02,407 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-07-27 05:39:35] 2025-07-27 12:39:02,407 | INFO     | exitcode: 65
[2025-07-27 05:39:35] 2025-07-27 12:39:02,407 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-07-27 05:39:35] 2025-07-27 12:39:02,407 | INFO     | cpuconsumptiontime: 21 s
[2025-07-27 05:39:35] 2025-07-27 12:39:02,407 | INFO     | nevents: 0
[2025-07-27 05:39:35] 2025-07-27 12:39:02,407 | INFO     | neventsw: 0
[2025-07-27 05:39:35] 2025-07-27 12:39:02,407 | INFO     | pid: 1942616
[2025-07-27 05:39:35] 2025-07-27 12:39:02,407 | INFO     | pgrp: 1942616
[2025-07-27 05:39:35] 2025-07-27 12:39:02,408 | INFO     | corecount: 12
[2025-07-27 05:39:35] 2025-07-27 12:39:02,408 | INFO     | event service: False
[2025-07-27 05:39:35] 2025-07-27 12:39:02,408 | INFO     | sizes: {0: 2397251, 1: 2397450, 7: 2397712, 11: 2397740, 36: 2425207, 38: 2425207, 159: 2425501}
[2025-07-27 05:39:35] 2025-07-27 12:39:02,408 | INFO     | --------------------------------------------------
[2025-07-27 05:39:35] 2025-07-27 12:39:02,408 | INFO     | 
[2025-07-27 05:39:35] 2025-07-27 12:39:02,408 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-07-27 05:39:35] 2025-07-27 12:39:02,441 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 05:39:35] 2025-07-27 12:39:02,441 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 05:39:35] 2025-07-27 12:39:02,441 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 05:39:35] 2025-07-27 12:39:02,441 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 05:39:35] 2025-07-27 12:39:02,441 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 05:39:35] 2025-07-27 12:39:02,441 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 05:39:35] 2025-07-27 12:39:02,441 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 05:39:35] 2025-07-27 12:39:02,441 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 05:39:35] 2025-07-27 12:39:02,442 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 05:39:35] 2025-07-27 12:39:02,442 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 05:39:35] 2025-07-27 12:39:02,442 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 05:39:35] 2025-07-27 12:39:02,442 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 05:39:35] 2025-07-27 12:39:02,442 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 05:39:35] 2025-07-27 12:39:02,442 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 05:39:35] 2025-07-27 12:39:02,442 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 05:39:35] 2025-07-27 12:39:02,442 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 05:39:35] 2025-07-27 12:39:02,442 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 05:39:35] 2025-07-27 12:39:02,442 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 05:39:35] 2025-07-27 12:39:02,442 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 05:39:35] 2025-07-27 12:39:02,442 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 05:39:35] 2025-07-27 12:39:02,442 | INFO     | job 6747128530 has completed (purged errors)
[2025-07-27 05:39:35] 2025-07-27 12:39:02,443 | INFO     | overall cleanup function is called
[2025-07-27 05:39:35] 2025-07-27 12:39:02,698 | INFO     | PID=1936309 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 05:39:35] 2025-07-27 12:39:02,699 | INFO     | .. there are 34 such processes running
[2025-07-27 05:39:35] 2025-07-27 12:39:03,448 | INFO     | --- collectZombieJob: --- 10, [1942616]
[2025-07-27 05:39:35] 2025-07-27 12:39:03,449 | INFO     | zombie collector waiting for pid 1942616
[2025-07-27 05:39:35] 2025-07-27 12:39:03,449 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 05:39:35] 2025-07-27 12:39:03,449 | INFO     | collected zombie processes
[2025-07-27 05:39:35] 2025-07-27 12:39:03,449 | INFO     | will attempt to kill all subprocesses of pid=1942616
[2025-07-27 05:39:35] 2025-07-27 12:39:03,705 | INFO     | process IDs to be killed: [1942616] (in reverse order)
[2025-07-27 05:39:35] 2025-07-27 12:39:03,813 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 05:39:35] 2025-07-27 12:39:03,814 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 05:39:35] 2025-07-27 12:39:03,825 | INFO     | did not find any defunct processes belonging to 1942616
[2025-07-27 05:39:35] 2025-07-27 12:39:03,834 | INFO     | did not find any defunct processes belonging to 1942616
[2025-07-27 05:39:35] 2025-07-27 12:39:03,834 | INFO     | ready for new job
[2025-07-27 05:39:35] 2025-07-27 12:39:03,835 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 05:39:35] 2025-07-27 12:39:03,836 | INFO     | ***************************************
[2025-07-27 05:39:35] 2025-07-27 12:39:03,836 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 05:39:35] 2025-07-27 12:39:03,836 | INFO     | ***************************************
[2025-07-27 05:39:35] 2025-07-27 12:39:03,836 | INFO     | 
[2025-07-27 05:39:35] 2025-07-27 12:39:03,839 | INFO     | architecture information:
[2025-07-27 05:39:35] 2025-07-27 12:39:03,839 | INFO     | executing command: cat /etc/os-release
[2025-07-27 05:39:35] 2025-07-27 12:39:03,852 | INFO     | cat /etc/os-release:
[2025-07-27 05:39:35] NAME="CentOS Linux"
[2025-07-27 05:39:35] VERSION="7 (Core)"
[2025-07-27 05:39:35] ID="centos"
[2025-07-27 05:39:35] ID_LIKE="rhel fedora"
[2025-07-27 05:39:35] VERSION_ID="7"
[2025-07-27 05:39:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 05:39:35] ANSI_COLOR="0;31"
[2025-07-27 05:39:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 05:39:35] HOME_URL="https://www.centos.org/"
[2025-07-27 05:39:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 05:39:35] 
[2025-07-27 05:39:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 05:39:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 05:39:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 05:39:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 05:39:35] 
[2025-07-27 05:39:35] 2025-07-27 12:39:03,853 | INFO     | ***************************************
[2025-07-27 05:39:35] 2025-07-27 12:39:04,356 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-07-27 05:39:35] 2025-07-27 12:39:04,378 | INFO     | sufficient remaining disk space (1770409426944 B)
[2025-07-27 05:39:35] 2025-07-27 12:39:04,378 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 05:39:35] 2025-07-27 12:39:04,379 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 05:39:35] 2025-07-27 12:39:04,379 | INFO     | update_server=False
[2025-07-27 05:39:35] 2025-07-27 12:39:04,379 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 05:39:35] 2025-07-27 12:39:04,379 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 05:39:35] 2025-07-27 12:39:04,379 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 05:39:35] 2025-07-27 12:39:04,379 | INFO     | aborting loop
[2025-07-27 05:39:35] 2025-07-27 12:39:04,830 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 05:39:35] 2025-07-27 12:39:04,831 | INFO     | all data control threads have been joined
[2025-07-27 05:39:35] 2025-07-27 12:39:05,384 | INFO     | [job] retrieve thread has finished
[2025-07-27 05:39:35] 2025-07-27 12:39:05,384 | INFO     | [job] job monitor thread has finished
[2025-07-27 05:39:35] 2025-07-27 12:39:05,474 | INFO     | [data] copytool_in thread has finished
[2025-07-27 05:39:35] 2025-07-27 12:39:05,670 | INFO     | all payload control threads have been joined
[2025-07-27 05:39:35] 2025-07-27 12:39:05,835 | INFO     | [data] control thread has finished
[2025-07-27 05:39:35] 2025-07-27 12:39:05,854 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 05:39:35] 2025-07-27 12:39:05,931 | INFO     | all job control threads have been joined
[2025-07-27 05:39:35] 2025-07-27 12:39:05,976 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 05:39:35] 2025-07-27 12:39:06,363 | INFO     | [payload] failed_post thread has finished
[2025-07-27 05:39:35] 2025-07-27 12:39:06,517 | INFO     | [job] validate thread has finished
[2025-07-27 05:39:35] 2025-07-27 12:39:06,667 | INFO     | [payload] validate_post thread has finished
[2025-07-27 05:39:35] 2025-07-27 12:39:06,675 | INFO     | [payload] control thread has finished
[2025-07-27 05:39:35] 2025-07-27 12:39:06,692 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 05:39:35] 2025-07-27 12:39:06,836 | INFO     | [data] copytool_out thread has finished
[2025-07-27 05:39:35] 2025-07-27 12:39:06,852 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 05:39:35] 2025-07-27 12:39:06,937 | INFO     | [job] control thread has finished
[2025-07-27 05:39:35] 2025-07-27 12:39:07,290 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 05:39:35] 2025-07-27 12:39:08,295 | INFO     | [job] queue monitor thread has finished
[2025-07-27 05:39:35] 2025-07-27 12:39:08,386 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 05:39:35] 2025-07-27 12:39:08,871 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139737393682240)>', '<ExcThread(monitor, started 139736559646464)>']
[2025-07-27 05:39:35] 2025-07-27 12:39:13,897 | INFO     | all workflow threads have been joined
[2025-07-27 05:39:35] 2025-07-27 12:39:13,897 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 05:39:35] 2025-07-27 12:39:13,898 | INFO     | traces error code: 0
[2025-07-27 05:39:35] 2025-07-27 12:39:13,898 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 05:39:35] 2025-07-27 12:39:35,114 | INFO     | PID=1936309 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 05:39:35] 2025-07-27 12:39:35,114 | INFO     | .. there are 35 such processes running
[2025-07-27 05:39:35] 2025-07-27 12:39:35,115 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 05:39:35] 2025-07-27 12:39:35,115 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 05:39:35] 2025-07-27 12:39:35,115 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 05:39:35] 2025-07-27 12:39:35,115 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 05:39:35] 2025-07-27 12:39:35,115 | CRITICAL | thread 'MainThread' is not alive
[2025-07-27 05:39:35] 2025-07-27 12:39:35,115 | INFO     | [monitor] control thread has ended
[2025-07-27 05:39:35] 2025-07-27 12:39:35,239 [wrapper] ==== pilot stdout END ====
[2025-07-27 05:39:35] 2025-07-27 12:39:35,244 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 05:39:35] 2025-07-27 12:39:35,247 [wrapper] pilotpid: 1936309
[2025-07-27 05:39:35] 2025-07-27 12:39:35,249 [wrapper] Pilot exit status: 0
[2025-07-27 05:39:35] 2025-07-27 12:39:35,261 [wrapper] pandaids: 6747128530
[2025-07-27 05:39:35] 2025-07-27 12:39:35,321 [wrapper] cleanup supervisor_pilot 1936315 1936310
[2025-07-27 05:39:35] 2025-07-27 12:39:35,325 [wrapper] Test setup, not cleaning
[2025-07-27 05:39:35] 2025-07-27 12:39:35,330 [wrapper] apfmon messages muted
[2025-07-27 05:39:35] 2025-07-27 12:39:35,335 [wrapper] ==== wrapper stdout END ====
[2025-07-27 05:39:35] 2025-07-27 12:39:35,339 [wrapper] ==== wrapper stderr END ====
[2025-07-27 05:39:35]  *** Error codes and diagnostics ***
[2025-07-27 05:39:35]     "exeErrorCode": 65,
[2025-07-27 05:39:35]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-07-27 05:39:35]     "pilotErrorCode": 1305,
[2025-07-27 05:39:35]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-07-27 05:39:35]  *** Listing of results directory ***
[2025-07-27 05:39:35] total 148492
[2025-07-27 05:39:35] -rw-r--r--. 1 boinc boinc    530466 Jul 27 02:06 pilot3.tar.gz
[2025-07-27 05:39:35] -rw-r--r--. 1 boinc boinc      5112 Jul 27 02:40 queuedata.json
[2025-07-27 05:39:35] -rwx------. 1 boinc boinc     36292 Jul 27 02:42 runpilot2-wrapper.sh
[2025-07-27 05:39:35] -rw-r--r--. 1 boinc boinc       100 Jul 27 05:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 05:39:35] -rwxr-xr-x. 1 boinc boinc      7986 Jul 27 05:35 run_atlas
[2025-07-27 05:39:35] -rw-r--r--. 1 boinc boinc       105 Jul 27 05:35 job.xml
[2025-07-27 05:39:35] -rw-r--r--. 2 boinc boinc 147985757 Jul 27 05:35 EVNT.45743347._001624.pool.root.1
[2025-07-27 05:39:35] -rw-r--r--. 1 boinc boinc      6591 Jul 27 05:35 init_data.xml
[2025-07-27 05:39:35] -rw-r--r--. 2 boinc boinc     15095 Jul 27 05:35 start_atlas.sh
[2025-07-27 05:39:35] drwxrwx--x. 2 boinc boinc      4096 Jul 27 05:35 shared
[2025-07-27 05:39:35] -rw-r--r--. 2 boinc boinc    542905 Jul 27 05:35 input.tar.gz
[2025-07-27 05:39:35] -rw-r--r--. 1 boinc boinc         0 Jul 27 05:35 boinc_lockfile
[2025-07-27 05:39:35] -rw-r--r--. 1 boinc boinc      2563 Jul 27 05:35 pandaJob.out
[2025-07-27 05:39:35] -rw-------. 1 boinc boinc    980117 Jul 27 05:36 agis_schedconf.cvmfs.json
[2025-07-27 05:39:35] -rw-------. 1 boinc boinc   1593052 Jul 27 05:36 agis_ddmendpoints.agis.ALL.json
[2025-07-27 05:39:35] drwx------. 4 boinc boinc      4096 Jul 27 05:36 pilot3
[2025-07-27 05:39:35] -rw-r--r--. 1 boinc boinc       522 Jul 27 05:36 boinc_task_state.xml
[2025-07-27 05:39:35] -rw-------. 1 boinc boinc       961 Jul 27 05:36 memory_monitor_summary.json
[2025-07-27 05:39:35] -rw-------. 1 boinc boinc     19885 Jul 27 05:36 log.45743349._046612.job.log.tgz.1
[2025-07-27 05:39:35] -rw-------. 1 boinc boinc      8377 Jul 27 05:39 heartbeat.json
[2025-07-27 05:39:35] -rw-r--r--. 1 boinc boinc      8192 Jul 27 05:39 boinc_mmap_file
[2025-07-27 05:39:35] -rw-r--r--. 1 boinc boinc        22 Jul 27 05:39 wrapper_checkpoint.txt
[2025-07-27 05:39:35] -rw-------. 1 boinc boinc       893 Jul 27 05:39 pilotlog.txt
[2025-07-27 05:39:35] -rw-------. 1 boinc boinc        95 Jul 27 05:39 pilot_heartbeat.json
[2025-07-27 05:39:35] -rw-------. 1 boinc boinc     75793 Jul 27 05:39 log.45743349._046612.job.log.1
[2025-07-27 05:39:35] -rw-------. 1 boinc boinc       188 Jul 27 05:39 output.list
[2025-07-27 05:39:35] -rw-r--r--. 1 boinc boinc       620 Jul 27 05:39 runtime_log
[2025-07-27 05:39:35] -rw-------. 1 boinc boinc    112640 Jul 27 05:39 result.tar.gz
[2025-07-27 05:39:35] -rw-------. 1 boinc boinc       645 Jul 27 05:39 tS7NDmW4C07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmtwULDmfldXNo.diag
[2025-07-27 05:39:35] -rw-r--r--. 1 boinc boinc      8485 Jul 27 05:39 runtime_log.err
[2025-07-27 05:39:35] -rw-r--r--. 1 boinc boinc     21762 Jul 27 05:39 stderr.txt
[2025-07-27 05:39:35] No HITS result produced
[2025-07-27 05:39:35]  *** Contents of shared directory: ***
[2025-07-27 05:39:35] total 145184
[2025-07-27 05:39:35] -rw-r--r--. 2 boinc boinc 147985757 Jul 27 05:35 ATLAS.root_0
[2025-07-27 05:39:35] -rw-r--r--. 2 boinc boinc     15095 Jul 27 05:35 start_atlas.sh
[2025-07-27 05:39:35] -rw-r--r--. 2 boinc boinc    542905 Jul 27 05:35 input.tar.gz
[2025-07-27 05:39:35] -rw-------. 1 boinc boinc    112640 Jul 27 05:39 result.tar.gz
05:39:36 (1932735): run_atlas exited; CPU time 26.020276
05:39:36 (1932735): called boinc_finish(0)

</stderr_txt>
]]>

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