Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:17:45 (3722424): wrapper (7.7.26015): starting
08:17:45 (3722424): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 08:17:45] Arguments: --nthreads 8
[2025-07-27 08:17:45] Threads: 8
[2025-07-27 08:17:45] Checking for CVMFS
[2025-07-27 08:17:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 08:17:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 08:17:46] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 08:17:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 08:17:46] 2.13.1.0 5062 1929 115160 148812 1 309 10924638 40960000 10400 16776704 0 5918653 99.754 3873875 47964 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 08:17:46] CVMFS is ok
[2025-07-27 08:17:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 08:17:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 08:17:46] Further information can be found at the LHC@home message board.
[2025-07-27 08:17:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 08:17:46] Checking for apptainer binary...
[2025-07-27 08:17:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 08:17:46] Running /usr/bin/apptainer --version
[2025-07-27 08:17:46] apptainer version 1.4.1-1.el9
[2025-07-27 08:17:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 08:17:46] c-206-40.aglt2.org
[2025-07-27 08:17:46] apptainer works
[2025-07-27 08:17:46] Set ATHENA_PROC_NUMBER=8
[2025-07-27 08:17:46] Set ATHENA_CORE_NUMBER=8
[2025-07-27 08:17:46] Starting ATLAS job with PandaID=6746303204
[2025-07-27 08:17:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 12:34:33]  *** The last 200 lines of the pilot log: ***
[2025-07-27 12:34:33] 2025-07-27 16:33:36,608 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 12:34:33] 2025-07-27 16:33:37,635 | INFO     | PID=3725997 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 12:34:33] 2025-07-27 16:33:37,636 | INFO     | .. there are 10 such processes running
[2025-07-27 12:34:33] 2025-07-27 16:33:38,884 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 12:34:33] 2025-07-27 16:33:38,889 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3207.4977656249994
[2025-07-27 12:34:33] 2025-07-27 16:33:38,910 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6746303204/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 12:34:33] 2025-07-27 16:33:38,911 | INFO     | extracted standard info from prmon json
[2025-07-27 12:34:33] 2025-07-27 16:33:38,911 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 12:34:33] 2025-07-27 16:33:38,911 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 12:34:33] 2025-07-27 16:33:38,912 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 12:34:33] 2025-07-27 16:33:38,912 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 12:34:33] 2025-07-27 16:33:38,915 | INFO     | fitting pss+swap vs Time
[2025-07-27 12:34:33] 2025-07-27 16:33:38,916 | INFO     | sum of square deviations: 4844912720.676006
[2025-07-27 12:34:33] 2025-07-27 16:33:38,917 | INFO     | sum of deviations: -38578884383.42801
[2025-07-27 12:34:33] 2025-07-27 16:33:38,918 | INFO     | mean x: 1753626311.036
[2025-07-27 12:34:33] 2025-07-27 16:33:38,918 | INFO     | mean y: 2558922.492
[2025-07-27 12:34:33] 2025-07-27 16:33:38,918 | INFO     | -- intersect: 13966266961.334784
[2025-07-27 12:34:33] 2025-07-27 16:33:38,918 | INFO     | intersect: 13966266961.334784
[2025-07-27 12:34:33] 2025-07-27 16:33:38,918 | INFO     | chi2: 3.813954098604533
[2025-07-27 12:34:33] 2025-07-27 16:33:38,918 | INFO     | sum of square deviations: 4560012310.800009
[2025-07-27 12:34:33] 2025-07-27 16:33:38,920 | INFO     | sum of deviations: -21467981855.57141
[2025-07-27 12:34:33] 2025-07-27 16:33:38,920 | INFO     | mean x: 1753626158.5428572
[2025-07-27 12:34:33] 2025-07-27 16:33:38,920 | INFO     | mean y: 2567944.102040816
[2025-07-27 12:34:33] 2025-07-27 16:33:38,920 | INFO     | -- intersect: 8258426039.899308
[2025-07-27 12:34:33] 2025-07-27 16:33:38,920 | INFO     | intersect: 8258426039.899308
[2025-07-27 12:34:33] 2025-07-27 16:33:38,921 | INFO     | chi2: 3.1475219759203394
[2025-07-27 12:34:33] 2025-07-27 16:33:38,921 | INFO     | current chi2=3.1475219759203394 (change=17.473522372176177 %)
[2025-07-27 12:34:33] 2025-07-27 16:33:38,921 | INFO     | right removable region: 244
[2025-07-27 12:34:33] 2025-07-27 16:33:38,921 | INFO     | sum of square deviations: 4559945576.710203
[2025-07-27 12:34:33] 2025-07-27 16:33:38,922 | INFO     | sum of deviations: -103236894187.53064
[2025-07-27 12:34:33] 2025-07-27 16:33:38,922 | INFO     | mean x: 1753626463.5469387
[2025-07-27 12:34:33] 2025-07-27 16:33:38,923 | INFO     | mean y: 2593414.9591836734
[2025-07-27 12:34:33] 2025-07-27 16:33:38,923 | INFO     | -- intersect: 39704591304.21039
[2025-07-27 12:34:33] 2025-07-27 16:33:38,923 | INFO     | intersect: 39704591304.21039
[2025-07-27 12:34:33] 2025-07-27 16:33:38,923 | INFO     | chi2: 1.1981259157300084
[2025-07-27 12:34:33] 2025-07-27 16:33:38,923 | INFO     | current chi2=1.1981259157300084 (change=68.58572796750794 %)
[2025-07-27 12:34:33] 2025-07-27 16:33:38,924 | INFO     | sum of square deviations: 4286389062.295825
[2025-07-27 12:34:33] 2025-07-27 16:33:38,925 | INFO     | sum of deviations: -111698260101.21252
[2025-07-27 12:34:33] 2025-07-27 16:33:38,925 | INFO     | mean x: 1753626616.0541666
[2025-07-27 12:34:33] 2025-07-27 16:33:38,925 | INFO     | mean y: 2598095.8625
[2025-07-27 12:34:33] 2025-07-27 16:33:38,925 | INFO     | -- intersect: 45700046235.46608
[2025-07-27 12:34:33] 2025-07-27 16:33:38,925 | INFO     | intersect: 45700046235.46608
[2025-07-27 12:34:33] 2025-07-27 16:33:38,926 | INFO     | chi2: 1.0811452063951155
[2025-07-27 12:34:33] 2025-07-27 16:33:38,926 | INFO     | current chi2=1.0811452063951155 (change=9.763640682425063 %)
[2025-07-27 12:34:33] 2025-07-27 16:33:38,926 | INFO     | left removable region: 20
[2025-07-27 12:34:33] 2025-07-27 16:33:38,926 | INFO     | sum of square deviations: 3485025155.357141
[2025-07-27 12:34:33] 2025-07-27 16:33:38,927 | INFO     | sum of deviations: -77896542100.66063
[2025-07-27 12:34:33] 2025-07-27 16:33:38,927 | INFO     | mean x: 1753626738.0535715
[2025-07-27 12:34:33] 2025-07-27 16:33:38,928 | INFO     | mean y: 2598895.3883928573
[2025-07-27 12:34:33] 2025-07-27 16:33:38,928 | INFO     | -- intersect: 39199291297.924416
[2025-07-27 12:34:33] 2025-07-27 16:33:38,928 | INFO     | intersect: 39199291297.924416
[2025-07-27 12:34:33] 2025-07-27 16:33:38,928 | INFO     | chi2: 0.3618662242319468
[2025-07-27 12:34:33] 2025-07-27 16:33:38,928 | INFO     | -- intersect: 39199291297.924416
[2025-07-27 12:34:33] 2025-07-27 16:33:38,928 | INFO     | current memory leak: -22.35 B/s (using 224 data points, chi2=0.36)
[2025-07-27 12:34:33] 2025-07-27 16:33:38,928 | INFO     | could have reported an average CPU frequency of 3235 MHz (12 samples)
[2025-07-27 12:34:33] 2025-07-27 16:33:38,929 | INFO     | ..............................
[2025-07-27 12:34:33] 2025-07-27 16:33:38,929 | INFO     | . Timing measurements:
[2025-07-27 12:34:33] 2025-07-27 16:33:38,929 | INFO     | . get job = 0 s
[2025-07-27 12:34:33] 2025-07-27 16:33:38,929 | INFO     | . initial setup = 2 s
[2025-07-27 12:34:33] 2025-07-27 16:33:38,929 | INFO     | . payload setup = 10 s
[2025-07-27 12:34:33] 2025-07-27 16:33:38,929 | INFO     | . stage-in = 0 s
[2025-07-27 12:34:33] 2025-07-27 16:33:38,929 | INFO     | . payload execution = 15249 s
[2025-07-27 12:34:33] 2025-07-27 16:33:38,929 | INFO     | . stage-out = 4 s
[2025-07-27 12:34:33] 2025-07-27 16:33:38,929 | INFO     | . log creation = 0 s
[2025-07-27 12:34:33] 2025-07-27 16:33:38,929 | INFO     | ..............................
[2025-07-27 12:34:33] 2025-07-27 16:33:39,564 | INFO     | 
[2025-07-27 12:34:33] 2025-07-27 16:33:39,570 | INFO     | job summary report
[2025-07-27 12:34:33] 2025-07-27 16:33:39,571 | INFO     | --------------------------------------------------
[2025-07-27 12:34:33] 2025-07-27 16:33:39,571 | INFO     | PanDA job id: 6746303204
[2025-07-27 12:34:33] 2025-07-27 16:33:39,571 | INFO     | task id: 45743349
[2025-07-27 12:34:33] 2025-07-27 16:33:39,571 | INFO     | errors: (none)
[2025-07-27 12:34:33] 2025-07-27 16:33:39,571 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 12:34:33] 2025-07-27 16:33:39,571 | INFO     | pilot state: finished 
[2025-07-27 12:34:33] 2025-07-27 16:33:39,571 | INFO     | transexitcode: 0
[2025-07-27 12:34:33] 2025-07-27 16:33:39,571 | INFO     | exeerrorcode: 0
[2025-07-27 12:34:33] 2025-07-27 16:33:39,571 | INFO     | exeerrordiag: 
[2025-07-27 12:34:33] 2025-07-27 16:33:39,571 | INFO     | exitcode: 0
[2025-07-27 12:34:33] 2025-07-27 16:33:39,571 | INFO     | exitmsg: OK
[2025-07-27 12:34:33] 2025-07-27 16:33:39,571 | INFO     | cpuconsumptiontime: 39040 s
[2025-07-27 12:34:33] 2025-07-27 16:33:39,571 | INFO     | nevents: 400
[2025-07-27 12:34:33] 2025-07-27 16:33:39,571 | INFO     | neventsw: 0
[2025-07-27 12:34:33] 2025-07-27 16:33:39,571 | INFO     | pid: 3732490
[2025-07-27 12:34:33] 2025-07-27 16:33:39,571 | INFO     | pgrp: 3732490
[2025-07-27 12:34:33] 2025-07-27 16:33:39,572 | INFO     | corecount: 8
[2025-07-27 12:34:33] 2025-07-27 16:33:39,572 | INFO     | event service: False
[2025-07-27 12:34:33] 2025-07-27 16:33:39,572 | INFO     | sizes: {0: 2396647, 1: 2397503, 7: 2397765, 12: 2397793, 15264: 2428893, 15268: 2437891, 15270: 2438075, 15320: 2438269}
[2025-07-27 12:34:33] 2025-07-27 16:33:39,572 | INFO     | --------------------------------------------------
[2025-07-27 12:34:33] 2025-07-27 16:33:39,572 | INFO     | 
[2025-07-27 12:34:33] 2025-07-27 16:33:39,572 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 12:34:33] 2025-07-27 16:33:39,853 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 12:34:33] 2025-07-27 16:33:39,853 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 12:34:33] 2025-07-27 16:33:39,853 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 12:34:33] 2025-07-27 16:33:39,853 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 12:34:33] 2025-07-27 16:33:39,853 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 12:34:33] 2025-07-27 16:33:39,854 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 12:34:33] 2025-07-27 16:33:39,854 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 12:34:33] 2025-07-27 16:33:39,854 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 12:34:33] 2025-07-27 16:33:39,854 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 12:34:33] 2025-07-27 16:33:39,854 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 12:34:33] 2025-07-27 16:33:39,854 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 12:34:33] 2025-07-27 16:33:39,854 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 12:34:33] 2025-07-27 16:33:39,854 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 12:34:33] 2025-07-27 16:33:39,854 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 12:34:33] 2025-07-27 16:33:39,854 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 12:34:33] 2025-07-27 16:33:39,854 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 12:34:33] 2025-07-27 16:33:39,854 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 12:34:33] 2025-07-27 16:33:39,854 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 12:34:33] 2025-07-27 16:33:39,854 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 12:34:33] 2025-07-27 16:33:39,854 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 12:34:33] 2025-07-27 16:33:39,855 | INFO     | job 6746303204 has completed (purged errors)
[2025-07-27 12:34:33] 2025-07-27 16:33:39,855 | INFO     | overall cleanup function is called
[2025-07-27 12:34:33] 2025-07-27 16:33:40,866 | INFO     | --- collectZombieJob: --- 10, [3732490]
[2025-07-27 12:34:33] 2025-07-27 16:33:40,866 | INFO     | zombie collector waiting for pid 3732490
[2025-07-27 12:34:33] 2025-07-27 16:33:40,867 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 12:34:33] 2025-07-27 16:33:40,867 | INFO     | collected zombie processes
[2025-07-27 12:34:33] 2025-07-27 16:33:40,867 | INFO     | will attempt to kill all subprocesses of pid=3732490
[2025-07-27 12:34:33] 2025-07-27 16:33:41,487 | INFO     | process IDs to be killed: [3732490] (in reverse order)
[2025-07-27 12:34:33] 2025-07-27 16:33:41,900 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 12:34:33] 2025-07-27 16:33:41,901 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 12:34:33] 2025-07-27 16:33:41,927 | INFO     | did not find any defunct processes belonging to 3732490
[2025-07-27 12:34:33] 2025-07-27 16:33:41,951 | INFO     | did not find any defunct processes belonging to 3732490
[2025-07-27 12:34:33] 2025-07-27 16:33:41,951 | INFO     | ready for new job
[2025-07-27 12:34:33] 2025-07-27 16:33:41,951 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 12:34:33] 2025-07-27 16:33:41,955 | INFO     | ***************************************
[2025-07-27 12:34:33] 2025-07-27 16:33:41,955 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 12:34:33] 2025-07-27 16:33:41,955 | INFO     | ***************************************
[2025-07-27 12:34:33] 2025-07-27 16:33:41,955 | INFO     | 
[2025-07-27 12:34:33] 2025-07-27 16:33:41,963 | INFO     | architecture information:
[2025-07-27 12:34:33] 2025-07-27 16:33:41,968 | INFO     | executing command: cat /etc/os-release
[2025-07-27 12:34:33] 2025-07-27 16:33:42,003 | INFO     | cat /etc/os-release:
[2025-07-27 12:34:33] NAME="CentOS Linux"
[2025-07-27 12:34:33] VERSION="7 (Core)"
[2025-07-27 12:34:33] ID="centos"
[2025-07-27 12:34:33] ID_LIKE="rhel fedora"
[2025-07-27 12:34:33] VERSION_ID="7"
[2025-07-27 12:34:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 12:34:33] ANSI_COLOR="0;31"
[2025-07-27 12:34:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 12:34:33] HOME_URL="https://www.centos.org/"
[2025-07-27 12:34:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 12:34:33] 
[2025-07-27 12:34:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 12:34:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 12:34:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 12:34:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 12:34:33] 
[2025-07-27 12:34:33] 2025-07-27 16:33:42,004 | INFO     | ***************************************
[2025-07-27 12:34:33] 2025-07-27 16:33:42,508 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 12:34:33] 2025-07-27 16:33:42,809 | INFO     | sufficient remaining disk space (85995814912 B)
[2025-07-27 12:34:33] 2025-07-27 16:33:42,809 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 12:34:33] 2025-07-27 16:33:42,809 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 12:34:33] 2025-07-27 16:33:42,810 | INFO     | update_server=False
[2025-07-27 12:34:33] 2025-07-27 16:33:42,810 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 12:34:33] 2025-07-27 16:33:42,821 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 12:34:33] 2025-07-27 16:33:42,822 | INFO     | aborting loop
[2025-07-27 12:34:33] 2025-07-27 16:33:42,967 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 12:34:33] 2025-07-27 16:33:43,816 | INFO     | [job] retrieve thread has finished
[2025-07-27 12:34:33] 2025-07-27 16:33:43,826 | INFO     | all data control threads have been joined
[2025-07-27 12:34:33] 2025-07-27 16:33:43,829 | INFO     | [job] job monitor thread has finished
[2025-07-27 12:34:33] 2025-07-27 16:33:43,906 | INFO     | all job control threads have been joined
[2025-07-27 12:34:33] 2025-07-27 16:33:43,990 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 12:34:33] 2025-07-27 16:33:44,160 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 12:34:33] 2025-07-27 16:33:44,210 | INFO     | [data] copytool_in thread has finished
[2025-07-27 12:34:33] 2025-07-27 16:33:44,246 | INFO     | all payload control threads have been joined
[2025-07-27 12:34:33] 2025-07-27 16:33:44,661 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 12:34:33] 2025-07-27 16:33:44,674 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 12:34:33] 2025-07-27 16:33:44,832 | INFO     | [data] control thread has finished
[2025-07-27 12:34:33] 2025-07-27 16:33:44,839 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 12:34:33] 2025-07-27 16:33:44,912 | INFO     | [job] control thread has finished
[2025-07-27 12:34:33] 2025-07-27 16:33:44,974 | INFO     | [data] copytool_out thread has finished
[2025-07-27 12:34:33] 2025-07-27 16:33:45,164 | INFO     | [job] validate thread has finished
[2025-07-27 12:34:33] 2025-07-27 16:33:45,166 | INFO     | [job] queue monitor thread has finished
[2025-07-27 12:34:33] 2025-07-27 16:33:45,201 | INFO     | [payload] failed_post thread has finished
[2025-07-27 12:34:33] 2025-07-27 16:33:45,218 | INFO     | [payload] validate_post thread has finished
[2025-07-27 12:34:33] 2025-07-27 16:33:45,254 | INFO     | [payload] control thread has finished
[2025-07-27 12:34:33] 2025-07-27 16:33:48,847 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 12:34:33] 2025-07-27 16:33:53,213 | INFO     | job.realtimelogging is not enabled
[2025-07-27 12:34:33] 2025-07-27 16:33:54,219 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 12:34:33] 2025-07-27 16:33:54,836 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139678676326208)>', '<ExcThread(monitor, started 139677965215488)>']
[2025-07-27 12:34:33] 2025-07-27 16:33:59,862 | INFO     | all workflow threads have been joined
[2025-07-27 12:34:33] 2025-07-27 16:33:59,862 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 12:34:33] 2025-07-27 16:33:59,863 | INFO     | traces error code: 0
[2025-07-27 12:34:33] 2025-07-27 16:33:59,863 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 12:34:33] 2025-07-27 16:34:12,233 | INFO     | PID=3725997 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 12:34:33] 2025-07-27 16:34:12,233 | INFO     | .. there are 10 such processes running
[2025-07-27 12:34:33] 2025-07-27 16:34:12,233 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 12:34:33] 2025-07-27 16:34:12,234 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 12:34:33] 2025-07-27 16:34:12,234 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 12:34:33] 2025-07-27 16:34:12,234 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 12:34:33] 2025-07-27 16:34:12,234 | INFO     | [monitor] control thread has ended
[2025-07-27 12:34:33] 2025-07-27 16:34:12,474 [wrapper] ==== pilot stdout END ====
[2025-07-27 12:34:33] 2025-07-27 16:34:12,512 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 12:34:33] 2025-07-27 16:34:12,564 [wrapper] pilotpid: 3725997
[2025-07-27 12:34:33] 2025-07-27 16:34:12,602 [wrapper] Pilot exit status: 0
[2025-07-27 12:34:33] 2025-07-27 16:34:12,796 [wrapper] pandaids: 6746303204
[2025-07-27 12:34:33] 2025-07-27 16:34:13,052 [wrapper] cleanup supervisor_pilot 4105987 3725998
[2025-07-27 12:34:33] 2025-07-27 16:34:13,098 [wrapper] Test setup, not cleaning
[2025-07-27 12:34:33] 2025-07-27 16:34:13,142 [wrapper] apfmon messages muted
[2025-07-27 12:34:33] 2025-07-27 16:34:13,186 [wrapper] ==== wrapper stdout END ====
[2025-07-27 12:34:33] 2025-07-27 16:34:13,232 [wrapper] ==== wrapper stderr END ====
[2025-07-27 12:34:33]  *** Error codes and diagnostics ***
[2025-07-27 12:34:33]     "exeErrorCode": 0,
[2025-07-27 12:34:33]     "exeErrorDiag": "",
[2025-07-27 12:34:33]     "pilotErrorCode": 0,
[2025-07-27 12:34:33]     "pilotErrorDiag": "",
[2025-07-27 12:34:33]  *** Listing of results directory ***
[2025-07-27 12:34:33] total 434028
[2025-07-27 12:34:33] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 02:36 pilot3.tar.gz
[2025-07-27 12:34:33] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 02:39 queuedata.json
[2025-07-27 12:34:33] -rwx------. 1 boincer umatlas     36292 Jul 27 02:39 runpilot2-wrapper.sh
[2025-07-27 12:34:33] -rw-r--r--. 1 boincer umatlas       100 Jul 27 08:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 12:34:33] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 08:17 run_atlas
[2025-07-27 12:34:33] -rw-r--r--. 1 boincer umatlas       105 Jul 27 08:17 job.xml
[2025-07-27 12:34:33] -rw-r--r--. 2 boincer umatlas 229230964 Jul 27 08:17 EVNT.45743347._002587.pool.root.1
[2025-07-27 12:34:33] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 08:17 start_atlas.sh
[2025-07-27 12:34:33] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 08:17 shared
[2025-07-27 12:34:33] -rw-r--r--. 2 boincer umatlas    542895 Jul 27 08:17 input.tar.gz
[2025-07-27 12:34:33] -rw-r--r--. 1 boincer umatlas         0 Jul 27 08:17 boinc_lockfile
[2025-07-27 12:34:33] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 08:17 pandaJob.out
[2025-07-27 12:34:33] -rw-------. 1 boincer umatlas    980117 Jul 27 08:17 agis_schedconf.cvmfs.json
[2025-07-27 12:34:33] drwx------. 4 boincer umatlas      4096 Jul 27 08:18 pilot3
[2025-07-27 12:34:33] -rw-r--r--. 1 boincer umatlas      6896 Jul 27 12:27 init_data.xml
[2025-07-27 12:34:33] -rw-------. 1 boincer umatlas 207770056 Jul 27 12:31 HITS.45743349._045800.pool.root.1
[2025-07-27 12:34:33] -rw-r--r--. 1 boincer umatlas       531 Jul 27 12:31 boinc_task_state.xml
[2025-07-27 12:34:33] -rw-------. 1 boincer umatlas      1033 Jul 27 12:32 memory_monitor_summary.json
[2025-07-27 12:34:33] -rw-------. 1 boincer umatlas   1593052 Jul 27 12:32 agis_ddmendpoints.agis.ALL.json
[2025-07-27 12:34:33] -rw-------. 1 boincer umatlas    415087 Jul 27 12:32 log.45743349._045800.job.log.tgz.1
[2025-07-27 12:34:33] -rw-------. 1 boincer umatlas        95 Jul 27 12:33 pilot_heartbeat.json
[2025-07-27 12:34:33] -rw-------. 1 boincer umatlas      7783 Jul 27 12:33 heartbeat.json
[2025-07-27 12:34:33] -rw-------. 1 boincer umatlas       823 Jul 27 12:34 pilotlog.txt
[2025-07-27 12:34:33] -rw-------. 1 boincer umatlas   1364649 Jul 27 12:34 log.45743349._045800.job.log.1
[2025-07-27 12:34:33] -rw-------. 1 boincer umatlas       357 Jul 27 12:34 output.list
[2025-07-27 12:34:33] -rw-r--r--. 1 boincer umatlas       620 Jul 27 12:34 runtime_log
[2025-07-27 12:34:33] -rw-------. 1 boincer umatlas   1802240 Jul 27 12:34 result.tar.gz
[2025-07-27 12:34:33] -rw-r--r--. 1 boincer umatlas      8661 Jul 27 12:34 runtime_log.err
[2025-07-27 12:34:33] -rw-------. 1 boincer umatlas       656 Jul 27 12:34 IuXLDmAEA07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmqVULDmWTe1Do.diag
[2025-07-27 12:34:33] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 12:34 boinc_mmap_file
[2025-07-27 12:34:33] -rw-r--r--. 1 boincer umatlas        28 Jul 27 12:34 wrapper_checkpoint.txt
[2025-07-27 12:34:33] -rw-r--r--. 1 boincer umatlas     21269 Jul 27 12:34 stderr.txt
[2025-07-27 12:34:33] HITS file was successfully produced:
[2025-07-27 12:34:33] -rw-------. 1 boincer umatlas 207770056 Jul 27 12:31 shared/HITS.pool.root.1
[2025-07-27 12:34:33]  *** Contents of shared directory: ***
[2025-07-27 12:34:33] total 429080
[2025-07-27 12:34:33] -rw-r--r--. 2 boincer umatlas 229230964 Jul 27 08:17 ATLAS.root_0
[2025-07-27 12:34:33] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 08:17 start_atlas.sh
[2025-07-27 12:34:33] -rw-r--r--. 2 boincer umatlas    542895 Jul 27 08:17 input.tar.gz
[2025-07-27 12:34:33] -rw-------. 1 boincer umatlas 207770056 Jul 27 12:31 HITS.pool.root.1
[2025-07-27 12:34:33] -rw-------. 1 boincer umatlas   1802240 Jul 27 12:34 result.tar.gz
12:34:35 (3722424): run_atlas exited; CPU time 39202.805385
12:34:35 (3722424): called boinc_finish(0)

</stderr_txt>
]]>

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