Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:31:04 (3719729): wrapper (7.7.26015): starting
09:31:04 (3719729): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 09:31:05] Arguments: --nthreads 12
[2025-07-27 09:31:05] Threads: 12
[2025-07-27 09:31:05] Checking for CVMFS
[2025-07-27 09:31:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 09:31:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 09:31:05] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 09:31:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 09:31:05] 2.13.0.0 2408171 18428 316888 148813 3 188 22166435 32935937 9771 16776704 0 37770347 99.689 57894255 29763 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 09:31:05] CVMFS is ok
[2025-07-27 09:31:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 09:31:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 09:31:05] Further information can be found at the LHC@home message board.
[2025-07-27 09:31:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 09:31:05] Checking for apptainer binary...
[2025-07-27 09:31:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 09:31:05] Running /usr/bin/apptainer --version
[2025-07-27 09:31:05] apptainer version 1.4.1-1.el9
[2025-07-27 09:31:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 09:31:05] c6-5-7-3.aglt2.org
[2025-07-27 09:31:05] apptainer works
[2025-07-27 09:31:05] Set ATHENA_PROC_NUMBER=12
[2025-07-27 09:31:05] Set ATHENA_CORE_NUMBER=12
[2025-07-27 09:31:05] Starting ATLAS job with PandaID=6746303359
[2025-07-27 09:31:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 10:48:53]  *** The last 200 lines of the pilot log: ***
[2025-07-27 10:48:53]  protocol_id=None
[2025-07-27 10:48:53]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 10:48:53]  replicas=None
[2025-07-27 10:48:53]  scope=mc23_13p6TeV
[2025-07-27 10:48:53]  status=None
[2025-07-27 10:48:53]  status_code=0
[2025-07-27 10:48:53]  storage_token=
[2025-07-27 10:48:53]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6746303359/log.45743349._045943.job.log.tgz.1
[2025-07-27 10:48:53]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9c/65/log.45743349._045943.job.log.tgz.1
[2025-07-27 10:48:53]  workdir=None
[2025-07-27 10:48:53] ]
[2025-07-27 10:48:53] 2025-07-27 14:48:13,620 | INFO     | transferring file log.45743349._045943.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6746303359/log.45743349._045943.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 10:48:53] 2025-07-27 14:48:13,620 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6746303359/log.45743349._045943.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._045943.job
[2025-07-27 10:48:53] 2025-07-27 14:48:13,648 | INFO     | adding to output.list: log.45743349._045943.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9c/65/log.45743349._045943.job.log.tg
[2025-07-27 10:48:53] 2025-07-27 14:48:13,649 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 10:48:53] 2025-07-27 14:48:13,649 | INFO     | summary of transferred files:
[2025-07-27 10:48:53] 2025-07-27 14:48:13,649 | INFO     |  -- lfn=log.45743349._045943.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 10:48:53] 2025-07-27 14:48:13,649 | INFO     | stage-out finished correctly
[2025-07-27 10:48:53] 2025-07-27 14:48:15,049 | INFO     | monitor loop #335: job 0:6746303359 is in state 'finished'
[2025-07-27 10:48:53] 2025-07-27 14:48:15,050 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 10:48:53] 2025-07-27 14:48:15,126 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 10:48:53] 2025-07-27 14:48:15,244 | INFO     | job 6746303359 has state=finished
[2025-07-27 10:48:53] 2025-07-27 14:48:15,244 | INFO     | preparing for final server update for job 6746303359 in state='finished'
[2025-07-27 10:48:53] 2025-07-27 14:48:15,245 | INFO     | this job has now completed (state=finished)
[2025-07-27 10:48:53] 2025-07-27 14:48:15,245 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 10:48:53] 2025-07-27 14:48:15,245 | INFO     | log transfer has been attempted: DONE
[2025-07-27 10:48:53] 2025-07-27 14:48:15,246 | INFO     | job 6746303359 has finished - writing final server update
[2025-07-27 10:48:53] 2025-07-27 14:48:15,246 | INFO     | total number of processed events: 400 (read)
[2025-07-27 10:48:53] 2025-07-27 14:48:15,247 | INFO     | executing command: lscpu
[2025-07-27 10:48:53] 2025-07-27 14:48:15,310 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 10:48:53] 2025-07-27 14:48:17,554 | INFO     | monitor loop #336: job 0:6746303359 is in state 'finished'
[2025-07-27 10:48:53] 2025-07-27 14:48:17,554 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 10:48:53] 2025-07-27 14:48:20,057 | INFO     | monitor loop #337: job 0:6746303359 is in state 'finished'
[2025-07-27 10:48:53] 2025-07-27 14:48:20,057 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 10:48:53] 2025-07-27 14:48:20,347 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 10:48:53] 2025-07-27 14:48:20,366 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2746.2075357142858
[2025-07-27 10:48:53] 2025-07-27 14:48:20,375 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6746303359/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 10:48:53] 2025-07-27 14:48:20,376 | INFO     | extracted standard info from prmon json
[2025-07-27 10:48:53] 2025-07-27 14:48:20,376 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 10:48:53] 2025-07-27 14:48:20,377 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 10:48:53] 2025-07-27 14:48:20,377 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 10:48:53] 2025-07-27 14:48:20,377 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 10:48:53] 2025-07-27 14:48:20,379 | INFO     | fitting pss+swap vs Time
[2025-07-27 10:48:53] 2025-07-27 14:48:20,379 | INFO     | sum of square deviations: 101843160.9855073
[2025-07-27 10:48:53] 2025-07-27 14:48:20,379 | INFO     | sum of deviations: -10150915965.57971
[2025-07-27 10:48:53] 2025-07-27 14:48:20,380 | INFO     | mean x: 1753625488.0144928
[2025-07-27 10:48:53] 2025-07-27 14:48:20,380 | INFO     | mean y: 2483242.579710145
[2025-07-27 10:48:53] 2025-07-27 14:48:20,380 | INFO     | -- intersect: 174789919057.4104
[2025-07-27 10:48:53] 2025-07-27 14:48:20,380 | INFO     | intersect: 174789919057.4104
[2025-07-27 10:48:53] 2025-07-27 14:48:20,380 | INFO     | chi2: 0.2302709444024972
[2025-07-27 10:48:53] 2025-07-27 14:48:20,380 | INFO     | -- intersect: 174789919057.4104
[2025-07-27 10:48:53] 2025-07-27 14:48:20,380 | INFO     | current memory leak: -99.67 B/s (using 69 data points, chi2=0.23)
[2025-07-27 10:48:53] 2025-07-27 14:48:20,380 | INFO     | could have reported an average CPU frequency of 2695 MHz (6 samples)
[2025-07-27 10:48:53] 2025-07-27 14:48:20,381 | INFO     | ..............................
[2025-07-27 10:48:53] 2025-07-27 14:48:20,381 | INFO     | . Timing measurements:
[2025-07-27 10:48:53] 2025-07-27 14:48:20,381 | INFO     | . get job = 0 s
[2025-07-27 10:48:53] 2025-07-27 14:48:20,381 | INFO     | . initial setup = 2 s
[2025-07-27 10:48:53] 2025-07-27 14:48:20,381 | INFO     | . payload setup = 8 s
[2025-07-27 10:48:53] 2025-07-27 14:48:20,381 | INFO     | . stage-in = 0 s
[2025-07-27 10:48:53] 2025-07-27 14:48:20,381 | INFO     | . payload execution = 4584 s
[2025-07-27 10:48:53] 2025-07-27 14:48:20,381 | INFO     | . stage-out = 0 s
[2025-07-27 10:48:53] 2025-07-27 14:48:20,381 | INFO     | . log creation = 0 s
[2025-07-27 10:48:53] 2025-07-27 14:48:20,381 | INFO     | ..............................
[2025-07-27 10:48:53] 2025-07-27 14:48:20,494 | INFO     | 
[2025-07-27 10:48:53] 2025-07-27 14:48:20,494 | INFO     | job summary report
[2025-07-27 10:48:53] 2025-07-27 14:48:20,494 | INFO     | --------------------------------------------------
[2025-07-27 10:48:53] 2025-07-27 14:48:20,494 | INFO     | PanDA job id: 6746303359
[2025-07-27 10:48:53] 2025-07-27 14:48:20,494 | INFO     | task id: 45743349
[2025-07-27 10:48:53] 2025-07-27 14:48:20,494 | INFO     | errors: (none)
[2025-07-27 10:48:53] 2025-07-27 14:48:20,494 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 10:48:53] 2025-07-27 14:48:20,494 | INFO     | pilot state: finished 
[2025-07-27 10:48:53] 2025-07-27 14:48:20,494 | INFO     | transexitcode: 0
[2025-07-27 10:48:53] 2025-07-27 14:48:20,494 | INFO     | exeerrorcode: 0
[2025-07-27 10:48:53] 2025-07-27 14:48:20,495 | INFO     | exeerrordiag: 
[2025-07-27 10:48:53] 2025-07-27 14:48:20,495 | INFO     | exitcode: 0
[2025-07-27 10:48:53] 2025-07-27 14:48:20,495 | INFO     | exitmsg: OK
[2025-07-27 10:48:53] 2025-07-27 14:48:20,495 | INFO     | cpuconsumptiontime: 45457 s
[2025-07-27 10:48:53] 2025-07-27 14:48:20,495 | INFO     | nevents: 400
[2025-07-27 10:48:53] 2025-07-27 14:48:20,495 | INFO     | neventsw: 0
[2025-07-27 10:48:53] 2025-07-27 14:48:20,495 | INFO     | pid: 3731397
[2025-07-27 10:48:53] 2025-07-27 14:48:20,495 | INFO     | pgrp: 3731397
[2025-07-27 10:48:53] 2025-07-27 14:48:20,495 | INFO     | corecount: 12
[2025-07-27 10:48:53] 2025-07-27 14:48:20,495 | INFO     | event service: False
[2025-07-27 10:48:53] 2025-07-27 14:48:20,495 | INFO     | sizes: {0: 2396647, 1: 2397503, 6: 2397765, 12: 2397793, 4597: 2423842, 4599: 2432840, 4600: 2433024, 4606: 2433218}
[2025-07-27 10:48:53] 2025-07-27 14:48:20,495 | INFO     | --------------------------------------------------
[2025-07-27 10:48:53] 2025-07-27 14:48:20,495 | INFO     | 
[2025-07-27 10:48:53] 2025-07-27 14:48:20,496 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 10:48:53] 2025-07-27 14:48:20,515 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 10:48:53] 2025-07-27 14:48:20,515 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 10:48:53] 2025-07-27 14:48:20,515 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 10:48:53] 2025-07-27 14:48:20,515 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 10:48:53] 2025-07-27 14:48:20,515 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 10:48:53] 2025-07-27 14:48:20,516 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 10:48:53] 2025-07-27 14:48:20,516 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 10:48:53] 2025-07-27 14:48:20,516 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 10:48:53] 2025-07-27 14:48:20,516 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 10:48:53] 2025-07-27 14:48:20,516 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 10:48:53] 2025-07-27 14:48:20,516 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 10:48:53] 2025-07-27 14:48:20,516 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 10:48:53] 2025-07-27 14:48:20,516 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 10:48:53] 2025-07-27 14:48:20,516 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 10:48:53] 2025-07-27 14:48:20,516 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 10:48:53] 2025-07-27 14:48:20,516 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 10:48:53] 2025-07-27 14:48:20,516 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 10:48:53] 2025-07-27 14:48:20,516 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 10:48:53] 2025-07-27 14:48:20,516 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 10:48:53] 2025-07-27 14:48:20,517 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 10:48:53] 2025-07-27 14:48:20,517 | INFO     | job 6746303359 has completed (purged errors)
[2025-07-27 10:48:53] 2025-07-27 14:48:20,517 | INFO     | overall cleanup function is called
[2025-07-27 10:48:53] 2025-07-27 14:48:21,524 | INFO     | --- collectZombieJob: --- 10, [3731397]
[2025-07-27 10:48:53] 2025-07-27 14:48:21,524 | INFO     | zombie collector waiting for pid 3731397
[2025-07-27 10:48:53] 2025-07-27 14:48:21,524 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 10:48:53] 2025-07-27 14:48:21,524 | INFO     | collected zombie processes
[2025-07-27 10:48:53] 2025-07-27 14:48:21,524 | INFO     | will attempt to kill all subprocesses of pid=3731397
[2025-07-27 10:48:53] 2025-07-27 14:48:21,778 | INFO     | process IDs to be killed: [3731397] (in reverse order)
[2025-07-27 10:48:53] 2025-07-27 14:48:21,873 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 10:48:53] 2025-07-27 14:48:21,873 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 10:48:53] 2025-07-27 14:48:21,885 | INFO     | did not find any defunct processes belonging to 3731397
[2025-07-27 10:48:53] 2025-07-27 14:48:21,896 | INFO     | did not find any defunct processes belonging to 3731397
[2025-07-27 10:48:53] 2025-07-27 14:48:21,897 | INFO     | ready for new job
[2025-07-27 10:48:53] 2025-07-27 14:48:21,897 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 10:48:53] 2025-07-27 14:48:21,898 | INFO     | ***************************************
[2025-07-27 10:48:53] 2025-07-27 14:48:21,898 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 10:48:53] 2025-07-27 14:48:21,899 | INFO     | ***************************************
[2025-07-27 10:48:53] 2025-07-27 14:48:21,899 | INFO     | 
[2025-07-27 10:48:53] 2025-07-27 14:48:21,914 | INFO     | architecture information:
[2025-07-27 10:48:53] 2025-07-27 14:48:21,914 | INFO     | executing command: cat /etc/os-release
[2025-07-27 10:48:53] 2025-07-27 14:48:21,932 | INFO     | cat /etc/os-release:
[2025-07-27 10:48:53] NAME="CentOS Linux"
[2025-07-27 10:48:53] VERSION="7 (Core)"
[2025-07-27 10:48:53] ID="centos"
[2025-07-27 10:48:53] ID_LIKE="rhel fedora"
[2025-07-27 10:48:53] VERSION_ID="7"
[2025-07-27 10:48:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 10:48:53] ANSI_COLOR="0;31"
[2025-07-27 10:48:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 10:48:53] HOME_URL="https://www.centos.org/"
[2025-07-27 10:48:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 10:48:53] 
[2025-07-27 10:48:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 10:48:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 10:48:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 10:48:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 10:48:53] 
[2025-07-27 10:48:53] 2025-07-27 14:48:21,933 | INFO     | ***************************************
[2025-07-27 10:48:53] 2025-07-27 14:48:22,435 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 10:48:53] 2025-07-27 14:48:22,455 | INFO     | sufficient remaining disk space (76348915712 B)
[2025-07-27 10:48:53] 2025-07-27 14:48:22,456 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 10:48:53] 2025-07-27 14:48:22,456 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 10:48:53] 2025-07-27 14:48:22,456 | INFO     | update_server=False
[2025-07-27 10:48:53] 2025-07-27 14:48:22,456 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 10:48:53] 2025-07-27 14:48:22,456 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 10:48:53] 2025-07-27 14:48:22,456 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 10:48:53] 2025-07-27 14:48:22,560 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-27 10:48:53] 2025-07-27 14:48:22,560 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-27 10:48:53] 2025-07-27 14:48:22,560 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 10:48:53] 2025-07-27 14:48:22,561 | INFO     | will abort loop
[2025-07-27 10:48:53] 2025-07-27 14:48:22,706 | INFO     | all job control threads have been joined
[2025-07-27 10:48:53] 2025-07-27 14:48:23,302 | INFO     | all data control threads have been joined
[2025-07-27 10:48:53] 2025-07-27 14:48:23,462 | INFO     | [job] retrieve thread has finished
[2025-07-27 10:48:53] 2025-07-27 14:48:23,462 | INFO     | [job] queue monitor thread has finished
[2025-07-27 10:48:53] 2025-07-27 14:48:23,500 | INFO     | [payload] failed_post thread has finished
[2025-07-27 10:48:53] 2025-07-27 14:48:23,565 | INFO     | [job] job monitor thread has finished
[2025-07-27 10:48:53] 2025-07-27 14:48:23,600 | INFO     | all payload control threads have been joined
[2025-07-27 10:48:53] 2025-07-27 14:48:23,653 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 10:48:53] 2025-07-27 14:48:23,711 | INFO     | [job] control thread has finished
[2025-07-27 10:48:53] 2025-07-27 14:48:23,798 | INFO     | [payload] validate_post thread has finished
[2025-07-27 10:48:53] 2025-07-27 14:48:23,814 | INFO     | [data] copytool_in thread has finished
[2025-07-27 10:48:53] 2025-07-27 14:48:24,308 | INFO     | [data] control thread has finished
[2025-07-27 10:48:53] 2025-07-27 14:48:24,462 | INFO     | [data] copytool_out thread has finished
[2025-07-27 10:48:53] 2025-07-27 14:48:24,568 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 10:48:53] 2025-07-27 14:48:24,588 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 10:48:53] 2025-07-27 14:48:24,605 | INFO     | [payload] control thread has finished
[2025-07-27 10:48:53] 2025-07-27 14:48:24,820 | INFO     | [job] validate thread has finished
[2025-07-27 10:48:53] 2025-07-27 14:48:25,754 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 10:48:53] 2025-07-27 14:48:29,762 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 10:48:53] 2025-07-27 14:48:32,603 | INFO     | job.realtimelogging is not enabled
[2025-07-27 10:48:53] 2025-07-27 14:48:33,608 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 10:48:53] 2025-07-27 14:48:35,600 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140206434027328)>', '<ExcThread(monitor, started 140206078404352)>']
[2025-07-27 10:48:53] 2025-07-27 14:48:40,625 | INFO     | all workflow threads have been joined
[2025-07-27 10:48:53] 2025-07-27 14:48:40,625 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 10:48:53] 2025-07-27 14:48:40,626 | INFO     | traces error code: 0
[2025-07-27 10:48:53] 2025-07-27 14:48:40,626 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 10:48:53] 2025-07-27 14:48:52,919 | INFO     | PID=3723309 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 10:48:53] 2025-07-27 14:48:52,920 | INFO     | .. there are 11 such processes running
[2025-07-27 10:48:53] 2025-07-27 14:48:52,921 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 10:48:53] 2025-07-27 14:48:52,921 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 10:48:53] 2025-07-27 14:48:52,922 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 10:48:53] 2025-07-27 14:48:52,922 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 10:48:53] 2025-07-27 14:48:52,922 | INFO     | [monitor] control thread has ended
[2025-07-27 10:48:53] 2025-07-27 14:48:53,114 [wrapper] ==== pilot stdout END ====
[2025-07-27 10:48:53] 2025-07-27 14:48:53,119 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 10:48:53] 2025-07-27 14:48:53,123 [wrapper] pilotpid: 3723309
[2025-07-27 10:48:53] 2025-07-27 14:48:53,127 [wrapper] Pilot exit status: 0
[2025-07-27 10:48:53] 2025-07-27 14:48:53,142 [wrapper] pandaids: 6746303359
[2025-07-27 10:48:53] 2025-07-27 14:48:53,223 [wrapper] cleanup supervisor_pilot 3949376 3723310
[2025-07-27 10:48:53] 2025-07-27 14:48:53,227 [wrapper] Test setup, not cleaning
[2025-07-27 10:48:53] 2025-07-27 14:48:53,230 [wrapper] apfmon messages muted
[2025-07-27 10:48:53] 2025-07-27 14:48:53,234 [wrapper] ==== wrapper stdout END ====
[2025-07-27 10:48:53] 2025-07-27 14:48:53,238 [wrapper] ==== wrapper stderr END ====
[2025-07-27 10:48:53]  *** Error codes and diagnostics ***
[2025-07-27 10:48:53]     "exeErrorCode": 0,
[2025-07-27 10:48:53]     "exeErrorDiag": "",
[2025-07-27 10:48:53]     "pilotErrorCode": 0,
[2025-07-27 10:48:53]     "pilotErrorDiag": "",
[2025-07-27 10:48:53]  *** Listing of results directory ***
[2025-07-27 10:48:53] total 391216
[2025-07-27 10:48:53] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 02:36 pilot3.tar.gz
[2025-07-27 10:48:53] -rwx------. 1 boincer umatlas     36292 Jul 27 02:48 runpilot2-wrapper.sh
[2025-07-27 10:48:53] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 02:48 queuedata.json
[2025-07-27 10:48:53] -rw-r--r--. 1 boincer umatlas       100 Jul 27 09:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 10:48:53] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 09:31 run_atlas
[2025-07-27 10:48:53] -rw-r--r--. 1 boincer umatlas       105 Jul 27 09:31 job.xml
[2025-07-27 10:48:53] -rw-r--r--. 2 boincer umatlas 189503691 Jul 27 09:31 EVNT.45743347._002593.pool.root.1
[2025-07-27 10:48:53] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 09:31 shared
[2025-07-27 10:48:53] -rw-r--r--. 2 boincer umatlas    542892 Jul 27 09:31 input.tar.gz
[2025-07-27 10:48:53] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 09:31 start_atlas.sh
[2025-07-27 10:48:53] -rw-r--r--. 1 boincer umatlas         0 Jul 27 09:31 boinc_lockfile
[2025-07-27 10:48:53] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 09:31 pandaJob.out
[2025-07-27 10:48:53] -rw-------. 1 boincer umatlas    980117 Jul 27 09:31 agis_schedconf.cvmfs.json
[2025-07-27 10:48:53] -rw-------. 1 boincer umatlas   1593052 Jul 27 09:31 agis_ddmendpoints.agis.ALL.json
[2025-07-27 10:48:53] drwx------. 4 boincer umatlas      4096 Jul 27 09:31 pilot3
[2025-07-27 10:48:53] -rw-r--r--. 1 boincer umatlas      6841 Jul 27 10:46 init_data.xml
[2025-07-27 10:48:53] -rw-------. 1 boincer umatlas 205563412 Jul 27 10:47 HITS.45743349._045943.pool.root.1
[2025-07-27 10:48:53] -rw-r--r--. 1 boincer umatlas       529 Jul 27 10:47 boinc_task_state.xml
[2025-07-27 10:48:53] -rw-------. 1 boincer umatlas      1035 Jul 27 10:48 memory_monitor_summary.json
[2025-07-27 10:48:53] -rw-------. 1 boincer umatlas    373344 Jul 27 10:48 log.45743349._045943.job.log.tgz.1
[2025-07-27 10:48:53] -rw-------. 1 boincer umatlas      7817 Jul 27 10:48 heartbeat.json
[2025-07-27 10:48:53] -rw-r--r--. 1 boincer umatlas        27 Jul 27 10:48 wrapper_checkpoint.txt
[2025-07-27 10:48:53] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 10:48 boinc_mmap_file
[2025-07-27 10:48:53] -rw-------. 1 boincer umatlas        95 Jul 27 10:48 pilot_heartbeat.json
[2025-07-27 10:48:53] -rw-------. 1 boincer umatlas       823 Jul 27 10:48 pilotlog.txt
[2025-07-27 10:48:53] -rw-------. 1 boincer umatlas    453129 Jul 27 10:48 log.45743349._045943.job.log.1
[2025-07-27 10:48:53] -rw-------. 1 boincer umatlas       357 Jul 27 10:48 output.list
[2025-07-27 10:48:53] -rw-r--r--. 1 boincer umatlas       620 Jul 27 10:48 runtime_log
[2025-07-27 10:48:53] -rw-------. 1 boincer umatlas    849920 Jul 27 10:48 result.tar.gz
[2025-07-27 10:48:53] -rw-------. 1 boincer umatlas       653 Jul 27 10:48 SNQNDm9LA07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmBYULDm21hl3n.diag
[2025-07-27 10:48:53] -rw-r--r--. 1 boincer umatlas      8662 Jul 27 10:48 runtime_log.err
[2025-07-27 10:48:53] -rw-r--r--. 1 boincer umatlas     21824 Jul 27 10:48 stderr.txt
[2025-07-27 10:48:53] HITS file was successfully produced:
[2025-07-27 10:48:53] -rw-------. 1 boincer umatlas 205563412 Jul 27 10:47 shared/HITS.pool.root.1
[2025-07-27 10:48:53]  *** Contents of shared directory: ***
[2025-07-27 10:48:53] total 387200
[2025-07-27 10:48:53] -rw-r--r--. 2 boincer umatlas 189503691 Jul 27 09:31 ATLAS.root_0
[2025-07-27 10:48:53] -rw-r--r--. 2 boincer umatlas    542892 Jul 27 09:31 input.tar.gz
[2025-07-27 10:48:53] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 09:31 start_atlas.sh
[2025-07-27 10:48:53] -rw-------. 1 boincer umatlas 205563412 Jul 27 10:47 HITS.pool.root.1
[2025-07-27 10:48:53] -rw-------. 1 boincer umatlas    849920 Jul 27 10:48 result.tar.gz
10:48:54 (3719729): run_atlas exited; CPU time 45483.288111
10:48:54 (3719729): called boinc_finish(0)

</stderr_txt>
]]>

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