Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:09:47 (931804): wrapper (7.7.26015): starting
08:09:47 (931804): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 08:09:47] Arguments: --nthreads 8
[2025-07-27 08:09:47] Threads: 8
[2025-07-27 08:09:47] Checking for CVMFS
[2025-07-27 08:09:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 08:09:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 08:09:48] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 08:09:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 08:09:49] 2.12.6.0 870721 18362 444172 148811 0 652 31823355 32935936 20322 16776704 1 116552094 99.655 114860380 19818 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 08:09:49] CVMFS is ok
[2025-07-27 08:09:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 08:09:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 08:09:49] Further information can be found at the LHC@home message board.
[2025-07-27 08:09:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 08:09:49] Checking for apptainer binary...
[2025-07-27 08:09:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 08:09:49] Running /usr/bin/apptainer --version
[2025-07-27 08:09:49] apptainer version 1.4.1-1.el9
[2025-07-27 08:09:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 08:09:50] lc-10-11.aglt2.org
[2025-07-27 08:09:50] apptainer works
[2025-07-27 08:09:50] Set ATHENA_PROC_NUMBER=8
[2025-07-27 08:09:50] Set ATHENA_CORE_NUMBER=8
[2025-07-27 08:09:50] Starting ATLAS job with PandaID=6746237318
[2025-07-27 08:09:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 11:02:51]  *** The last 200 lines of the pilot log: ***
[2025-07-27 11:02:51] 2025-07-27 15:02:15,733 | INFO     | PID=942235 has CPU usage=13.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 11:02:51] 2025-07-27 15:02:15,733 | INFO     | .. there are 25 such processes running
[2025-07-27 11:02:51] 2025-07-27 15:02:16,480 | INFO     | monitor loop #647: job 0:6746237318 is in state 'finished'
[2025-07-27 11:02:51] 2025-07-27 15:02:16,480 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 11:02:51] 2025-07-27 15:02:16,890 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 11:02:51] 2025-07-27 15:02:16,899 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2394.160666666667
[2025-07-27 11:02:51] 2025-07-27 15:02:16,921 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6746237318/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 11:02:51] 2025-07-27 15:02:16,922 | INFO     | extracted standard info from prmon json
[2025-07-27 11:02:51] 2025-07-27 15:02:16,923 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 11:02:51] 2025-07-27 15:02:16,923 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 11:02:51] 2025-07-27 15:02:16,923 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 11:02:51] 2025-07-27 15:02:16,924 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 11:02:51] 2025-07-27 15:02:16,928 | INFO     | fitting pss+swap vs Time
[2025-07-27 11:02:51] 2025-07-27 15:02:16,928 | INFO     | sum of square deviations: 1470287406.4761877
[2025-07-27 11:02:51] 2025-07-27 15:02:16,929 | INFO     | sum of deviations: 13428547886.42856
[2025-07-27 11:02:51] 2025-07-27 15:02:16,929 | INFO     | mean x: 1753623408.5952382
[2025-07-27 11:02:51] 2025-07-27 15:02:16,929 | INFO     | mean y: 2122449.535714286
[2025-07-27 11:02:51] 2025-07-27 15:02:16,930 | INFO     | -- intersect: -16014212733.203686
[2025-07-27 11:02:51] 2025-07-27 15:02:16,930 | INFO     | intersect: -16014212733.203686
[2025-07-27 11:02:51] 2025-07-27 15:02:16,930 | INFO     | chi2: 2.9246678153436454
[2025-07-27 11:02:51] 2025-07-27 15:02:16,930 | INFO     | sum of square deviations: 1342885246.4294498
[2025-07-27 11:02:51] 2025-07-27 15:02:16,931 | INFO     | sum of deviations: 23615882753.64418
[2025-07-27 11:02:51] 2025-07-27 15:02:16,931 | INFO     | mean x: 1753623256.0981596
[2025-07-27 11:02:51] 2025-07-27 15:02:16,933 | INFO     | mean y: 2134403.1472392636
[2025-07-27 11:02:51] 2025-07-27 15:02:16,933 | INFO     | -- intersect: -30836957261.751457
[2025-07-27 11:02:51] 2025-07-27 15:02:16,933 | INFO     | intersect: -30836957261.751457
[2025-07-27 11:02:51] 2025-07-27 15:02:16,933 | INFO     | chi2: 2.25997690393338
[2025-07-27 11:02:51] 2025-07-27 15:02:16,933 | INFO     | current chi2=2.25997690393338 (change=22.72705665659212 %)
[2025-07-27 11:02:51] 2025-07-27 15:02:16,933 | INFO     | right removable region: 162
[2025-07-27 11:02:51] 2025-07-27 15:02:16,934 | INFO     | sum of square deviations: 1342875486.4294498
[2025-07-27 11:02:51] 2025-07-27 15:02:16,935 | INFO     | sum of deviations: -18553578328.895706
[2025-07-27 11:02:51] 2025-07-27 15:02:16,935 | INFO     | mean x: 1753623561.0981596
[2025-07-27 11:02:51] 2025-07-27 15:02:16,935 | INFO     | mean y: 2160536.680981595
[2025-07-27 11:02:51] 2025-07-27 15:02:16,935 | INFO     | -- intersect: 24230759858.827488
[2025-07-27 11:02:51] 2025-07-27 15:02:16,935 | INFO     | intersect: 24230759858.827488
[2025-07-27 11:02:51] 2025-07-27 15:02:16,936 | INFO     | chi2: 0.8384123239898239
[2025-07-27 11:02:51] 2025-07-27 15:02:16,936 | INFO     | current chi2=0.8384123239898239 (change=71.33307517553712 %)
[2025-07-27 11:02:51] 2025-07-27 15:02:16,936 | INFO     | sum of square deviations: 1223045103.879743
[2025-07-27 11:02:51] 2025-07-27 15:02:16,937 | INFO     | sum of deviations: -22148607415.79113
[2025-07-27 11:02:51] 2025-07-27 15:02:16,937 | INFO     | mean x: 1753623713.601266
[2025-07-27 11:02:51] 2025-07-27 15:02:16,937 | INFO     | mean y: 2165029.9556962023
[2025-07-27 11:02:51] 2025-07-27 15:02:16,937 | INFO     | -- intersect: 31759230296.287186
[2025-07-27 11:02:51] 2025-07-27 15:02:16,937 | INFO     | intersect: 31759230296.287186
[2025-07-27 11:02:51] 2025-07-27 15:02:16,938 | INFO     | chi2: 0.7682117539346871
[2025-07-27 11:02:51] 2025-07-27 15:02:16,938 | INFO     | current chi2=0.7682117539346871 (change=8.373036517529632 %)
[2025-07-27 11:02:51] 2025-07-27 15:02:16,938 | INFO     | left removable region: 20
[2025-07-27 11:02:51] 2025-07-27 15:02:16,938 | INFO     | sum of square deviations: 887838635.6971825
[2025-07-27 11:02:51] 2025-07-27 15:02:16,939 | INFO     | sum of deviations: -10429287395.021128
[2025-07-27 11:02:51] 2025-07-27 15:02:16,939 | INFO     | mean x: 1753623835.6126761
[2025-07-27 11:02:51] 2025-07-27 15:02:16,939 | INFO     | mean y: 2178353.3450704226
[2025-07-27 11:02:51] 2025-07-27 15:02:16,939 | INFO     | -- intersect: 20601695235.151257
[2025-07-27 11:02:51] 2025-07-27 15:02:16,939 | INFO     | intersect: 20601695235.151257
[2025-07-27 11:02:51] 2025-07-27 15:02:16,939 | INFO     | chi2: 0.07423106715925276
[2025-07-27 11:02:51] 2025-07-27 15:02:16,940 | INFO     | -- intersect: 20601695235.151257
[2025-07-27 11:02:51] 2025-07-27 15:02:16,940 | INFO     | current memory leak: -11.75 B/s (using 142 data points, chi2=0.07)
[2025-07-27 11:02:51] 2025-07-27 15:02:16,940 | INFO     | could have reported an average CPU frequency of 2370 MHz (9 samples)
[2025-07-27 11:02:51] 2025-07-27 15:02:16,941 | INFO     | ..............................
[2025-07-27 11:02:51] 2025-07-27 15:02:16,941 | INFO     | . Timing measurements:
[2025-07-27 11:02:51] 2025-07-27 15:02:16,941 | INFO     | . get job = 0 s
[2025-07-27 11:02:51] 2025-07-27 15:02:16,941 | INFO     | . initial setup = 5 s
[2025-07-27 11:02:51] 2025-07-27 15:02:16,941 | INFO     | . payload setup = 28 s
[2025-07-27 11:02:51] 2025-07-27 15:02:16,941 | INFO     | . stage-in = 0 s
[2025-07-27 11:02:51] 2025-07-27 15:02:16,941 | INFO     | . payload execution = 10224 s
[2025-07-27 11:02:51] 2025-07-27 15:02:16,941 | INFO     | . stage-out = 1 s
[2025-07-27 11:02:51] 2025-07-27 15:02:16,941 | INFO     | . log creation = 0 s
[2025-07-27 11:02:51] 2025-07-27 15:02:16,941 | INFO     | ..............................
[2025-07-27 11:02:51] 2025-07-27 15:02:17,054 | INFO     | 
[2025-07-27 11:02:51] 2025-07-27 15:02:17,054 | INFO     | job summary report
[2025-07-27 11:02:51] 2025-07-27 15:02:17,054 | INFO     | --------------------------------------------------
[2025-07-27 11:02:51] 2025-07-27 15:02:17,054 | INFO     | PanDA job id: 6746237318
[2025-07-27 11:02:51] 2025-07-27 15:02:17,054 | INFO     | task id: 45743349
[2025-07-27 11:02:51] 2025-07-27 15:02:17,054 | INFO     | errors: (none)
[2025-07-27 11:02:51] 2025-07-27 15:02:17,054 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 11:02:51] 2025-07-27 15:02:17,054 | INFO     | pilot state: finished 
[2025-07-27 11:02:51] 2025-07-27 15:02:17,054 | INFO     | transexitcode: 0
[2025-07-27 11:02:51] 2025-07-27 15:02:17,055 | INFO     | exeerrorcode: 0
[2025-07-27 11:02:51] 2025-07-27 15:02:17,055 | INFO     | exeerrordiag: 
[2025-07-27 11:02:51] 2025-07-27 15:02:17,055 | INFO     | exitcode: 0
[2025-07-27 11:02:51] 2025-07-27 15:02:17,055 | INFO     | exitmsg: OK
[2025-07-27 11:02:51] 2025-07-27 15:02:17,055 | INFO     | cpuconsumptiontime: 58547 s
[2025-07-27 11:02:51] 2025-07-27 15:02:17,055 | INFO     | nevents: 400
[2025-07-27 11:02:51] 2025-07-27 15:02:17,055 | INFO     | neventsw: 0
[2025-07-27 11:02:51] 2025-07-27 15:02:17,055 | INFO     | pid: 957050
[2025-07-27 11:02:51] 2025-07-27 15:02:17,055 | INFO     | pgrp: 957050
[2025-07-27 11:02:51] 2025-07-27 15:02:17,055 | INFO     | corecount: 8
[2025-07-27 11:02:51] 2025-07-27 15:02:17,055 | INFO     | event service: False
[2025-07-27 11:02:51] 2025-07-27 15:02:17,055 | INFO     | sizes: {0: 2397252, 1: 2397451, 2: 2397479, 13: 2397479, 22: 2397797, 23: 2397825, 10256: 2426545, 10257: 2426544, 10258: 2435598, 10261: 2435654, 10270: 2435912}
[2025-07-27 11:02:51] 2025-07-27 15:02:17,055 | INFO     | --------------------------------------------------
[2025-07-27 11:02:51] 2025-07-27 15:02:17,056 | INFO     | 
[2025-07-27 11:02:51] 2025-07-27 15:02:17,056 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 11:02:51] 2025-07-27 15:02:17,104 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 11:02:51] 2025-07-27 15:02:17,104 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 11:02:51] 2025-07-27 15:02:17,104 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 11:02:51] 2025-07-27 15:02:17,104 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 11:02:51] 2025-07-27 15:02:17,104 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 11:02:51] 2025-07-27 15:02:17,104 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 11:02:51] 2025-07-27 15:02:17,105 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 11:02:51] 2025-07-27 15:02:17,105 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 11:02:51] 2025-07-27 15:02:17,105 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 11:02:51] 2025-07-27 15:02:17,105 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 11:02:51] 2025-07-27 15:02:17,105 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 11:02:51] 2025-07-27 15:02:17,105 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 11:02:51] 2025-07-27 15:02:17,105 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 11:02:51] 2025-07-27 15:02:17,105 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 11:02:51] 2025-07-27 15:02:17,105 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 11:02:51] 2025-07-27 15:02:17,105 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 11:02:51] 2025-07-27 15:02:17,105 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 11:02:51] 2025-07-27 15:02:17,106 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 11:02:51] 2025-07-27 15:02:17,106 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 11:02:51] 2025-07-27 15:02:17,106 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 11:02:51] 2025-07-27 15:02:17,106 | INFO     | job 6746237318 has completed (purged errors)
[2025-07-27 11:02:51] 2025-07-27 15:02:17,106 | INFO     | overall cleanup function is called
[2025-07-27 11:02:51] 2025-07-27 15:02:18,115 | INFO     | --- collectZombieJob: --- 10, [957050]
[2025-07-27 11:02:51] 2025-07-27 15:02:18,116 | INFO     | zombie collector waiting for pid 957050
[2025-07-27 11:02:51] 2025-07-27 15:02:18,116 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 11:02:51] 2025-07-27 15:02:18,117 | INFO     | collected zombie processes
[2025-07-27 11:02:51] 2025-07-27 15:02:18,117 | INFO     | will attempt to kill all subprocesses of pid=957050
[2025-07-27 11:02:51] 2025-07-27 15:02:18,684 | INFO     | process IDs to be killed: [957050] (in reverse order)
[2025-07-27 11:02:51] 2025-07-27 15:02:18,872 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 11:02:51] 2025-07-27 15:02:18,873 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 11:02:51] 2025-07-27 15:02:18,896 | INFO     | did not find any defunct processes belonging to 957050
[2025-07-27 11:02:51] 2025-07-27 15:02:18,918 | INFO     | did not find any defunct processes belonging to 957050
[2025-07-27 11:02:51] 2025-07-27 15:02:18,918 | INFO     | ready for new job
[2025-07-27 11:02:51] 2025-07-27 15:02:18,919 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 11:02:51] 2025-07-27 15:02:18,920 | INFO     | ***************************************
[2025-07-27 11:02:51] 2025-07-27 15:02:18,921 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 11:02:51] 2025-07-27 15:02:18,921 | INFO     | ***************************************
[2025-07-27 11:02:51] 2025-07-27 15:02:18,921 | INFO     | 
[2025-07-27 11:02:51] 2025-07-27 15:02:18,940 | INFO     | architecture information:
[2025-07-27 11:02:51] 2025-07-27 15:02:18,941 | INFO     | executing command: cat /etc/os-release
[2025-07-27 11:02:51] 2025-07-27 15:02:18,973 | INFO     | cat /etc/os-release:
[2025-07-27 11:02:51] NAME="CentOS Linux"
[2025-07-27 11:02:51] VERSION="7 (Core)"
[2025-07-27 11:02:51] ID="centos"
[2025-07-27 11:02:51] ID_LIKE="rhel fedora"
[2025-07-27 11:02:51] VERSION_ID="7"
[2025-07-27 11:02:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 11:02:51] ANSI_COLOR="0;31"
[2025-07-27 11:02:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 11:02:51] HOME_URL="https://www.centos.org/"
[2025-07-27 11:02:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 11:02:51] 
[2025-07-27 11:02:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 11:02:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 11:02:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 11:02:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 11:02:51] 
[2025-07-27 11:02:51] 2025-07-27 15:02:18,975 | INFO     | ***************************************
[2025-07-27 11:02:51] 2025-07-27 15:02:19,478 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 11:02:51] 2025-07-27 15:02:19,502 | INFO     | sufficient remaining disk space (95736037376 B)
[2025-07-27 11:02:51] 2025-07-27 15:02:19,503 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 11:02:51] 2025-07-27 15:02:19,503 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 11:02:51] 2025-07-27 15:02:19,503 | INFO     | update_server=False
[2025-07-27 11:02:51] 2025-07-27 15:02:19,503 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 11:02:51] 2025-07-27 15:02:19,504 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 11:02:51] 2025-07-27 15:02:19,504 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 11:02:51] 2025-07-27 15:02:19,993 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 11:02:51] 2025-07-27 15:02:19,993 | INFO     | aborting loop
[2025-07-27 11:02:51] 2025-07-27 15:02:20,116 | INFO     | all data control threads have been joined
[2025-07-27 11:02:51] 2025-07-27 15:02:20,508 | INFO     | [job] retrieve thread has finished
[2025-07-27 11:02:51] 2025-07-27 15:02:20,779 | INFO     | all job control threads have been joined
[2025-07-27 11:02:51] 2025-07-27 15:02:20,812 | INFO     | all payload control threads have been joined
[2025-07-27 11:02:51] 2025-07-27 15:02:20,998 | INFO     | [job] job monitor thread has finished
[2025-07-27 11:02:51] 2025-07-27 15:02:21,121 | INFO     | [data] control thread has finished
[2025-07-27 11:02:51] 2025-07-27 15:02:21,189 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 11:02:51] 2025-07-27 15:02:21,216 | INFO     | [payload] failed_post thread has finished
[2025-07-27 11:02:51] 2025-07-27 15:02:21,372 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 11:02:51] 2025-07-27 15:02:21,403 | INFO     | [payload] validate_post thread has finished
[2025-07-27 11:02:51] 2025-07-27 15:02:21,512 | INFO     | [data] copytool_out thread has finished
[2025-07-27 11:02:51] 2025-07-27 15:02:21,572 | INFO     | [job] validate thread has finished
[2025-07-27 11:02:51] 2025-07-27 15:02:21,679 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 11:02:51] 2025-07-27 15:02:21,784 | INFO     | [job] control thread has finished
[2025-07-27 11:02:51] 2025-07-27 15:02:21,795 | INFO     | [data] copytool_in thread has finished
[2025-07-27 11:02:51] 2025-07-27 15:02:21,817 | INFO     | [payload] control thread has finished
[2025-07-27 11:02:51] 2025-07-27 15:02:22,002 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 11:02:51] 2025-07-27 15:02:22,065 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 11:02:51] 2025-07-27 15:02:23,071 | INFO     | [job] queue monitor thread has finished
[2025-07-27 11:02:51] 2025-07-27 15:02:23,511 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 11:02:51] 2025-07-27 15:02:25,055 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139688653821760)>', '<ExcThread(monitor, started 139688157370112)>']
[2025-07-27 11:02:51] 2025-07-27 15:02:30,081 | INFO     | all workflow threads have been joined
[2025-07-27 11:02:51] 2025-07-27 15:02:30,081 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 11:02:51] 2025-07-27 15:02:30,081 | INFO     | traces error code: 0
[2025-07-27 11:02:51] 2025-07-27 15:02:30,082 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 11:02:51] 2025-07-27 15:02:50,492 | INFO     | PID=942235 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 11:02:51] 2025-07-27 15:02:50,493 | INFO     | .. there are 25 such processes running
[2025-07-27 11:02:51] 2025-07-27 15:02:50,493 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 11:02:51] 2025-07-27 15:02:50,493 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 11:02:51] 2025-07-27 15:02:50,493 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 11:02:51] 2025-07-27 15:02:50,493 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 11:02:51] 2025-07-27 15:02:50,493 | INFO     | [monitor] control thread has ended
[2025-07-27 11:02:51] 2025-07-27 15:02:50,723 [wrapper] ==== pilot stdout END ====
[2025-07-27 11:02:51] 2025-07-27 15:02:50,728 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 11:02:51] 2025-07-27 15:02:50,733 [wrapper] pilotpid: 942235
[2025-07-27 11:02:51] 2025-07-27 15:02:50,737 [wrapper] Pilot exit status: 0
[2025-07-27 11:02:51] 2025-07-27 15:02:50,763 [wrapper] pandaids: 6746237318
[2025-07-27 11:02:51] 2025-07-27 15:02:50,869 [wrapper] cleanup supervisor_pilot 2037860 942236
[2025-07-27 11:02:51] 2025-07-27 15:02:50,878 [wrapper] Test setup, not cleaning
[2025-07-27 11:02:51] 2025-07-27 15:02:50,886 [wrapper] apfmon messages muted
[2025-07-27 11:02:51] 2025-07-27 15:02:50,892 [wrapper] ==== wrapper stdout END ====
[2025-07-27 11:02:51] 2025-07-27 15:02:50,899 [wrapper] ==== wrapper stderr END ====
[2025-07-27 11:02:51]  *** Error codes and diagnostics ***
[2025-07-27 11:02:51]     "exeErrorCode": 0,
[2025-07-27 11:02:51]     "exeErrorDiag": "",
[2025-07-27 11:02:51]     "pilotErrorCode": 0,
[2025-07-27 11:02:51]     "pilotErrorDiag": "",
[2025-07-27 11:02:51]  *** Listing of results directory ***
[2025-07-27 11:02:51] total 355716
[2025-07-27 11:02:51] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 02:09 pilot3.tar.gz
[2025-07-27 11:02:51] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 02:18 queuedata.json
[2025-07-27 11:02:51] -rwx------. 1 boincer umatlas     36292 Jul 27 02:19 runpilot2-wrapper.sh
[2025-07-27 11:02:51] -rw-r--r--. 1 boincer umatlas       100 Jul 27 08:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 11:02:51] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 08:09 run_atlas
[2025-07-27 11:02:51] -rw-r--r--. 1 boincer umatlas       105 Jul 27 08:09 job.xml
[2025-07-27 11:02:51] -rw-r--r--. 2 boincer umatlas 147664349 Jul 27 08:09 EVNT.45743347._001014.pool.root.1
[2025-07-27 11:02:51] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 08:09 shared
[2025-07-27 11:02:51] -rw-r--r--. 2 boincer umatlas    542896 Jul 27 08:09 input.tar.gz
[2025-07-27 11:02:51] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 08:09 start_atlas.sh
[2025-07-27 11:02:51] -rw-r--r--. 1 boincer umatlas         0 Jul 27 08:09 boinc_lockfile
[2025-07-27 11:02:51] -rw-r--r--. 1 boincer umatlas      2562 Jul 27 08:09 pandaJob.out
[2025-07-27 11:02:51] -rw-------. 1 boincer umatlas    980109 Jul 27 08:10 agis_schedconf.cvmfs.json
[2025-07-27 11:02:51] -rw-------. 1 boincer umatlas   1593052 Jul 27 08:10 agis_ddmendpoints.agis.ALL.json
[2025-07-27 11:02:51] drwx------. 4 boincer umatlas      4096 Jul 27 08:10 pilot3
[2025-07-27 11:02:51] -rw-r--r--. 1 boincer umatlas      6865 Jul 27 11:00 init_data.xml
[2025-07-27 11:02:51] -rw-------. 1 boincer umatlas 210295374 Jul 27 11:01 HITS.45743349._045654.pool.root.1
[2025-07-27 11:02:51] -rw-r--r--. 1 boincer umatlas       530 Jul 27 11:01 boinc_task_state.xml
[2025-07-27 11:02:51] -rw-------. 1 boincer umatlas      1042 Jul 27 11:02 memory_monitor_summary.json
[2025-07-27 11:02:51] -rw-------. 1 boincer umatlas    347896 Jul 27 11:02 log.45743349._045654.job.log.tgz.1
[2025-07-27 11:02:51] -rw-------. 1 boincer umatlas        95 Jul 27 11:02 pilot_heartbeat.json
[2025-07-27 11:02:51] -rw-------. 1 boincer umatlas      7824 Jul 27 11:02 heartbeat.json
[2025-07-27 11:02:51] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 11:02 boinc_mmap_file
[2025-07-27 11:02:51] -rw-r--r--. 1 boincer umatlas        28 Jul 27 11:02 wrapper_checkpoint.txt
[2025-07-27 11:02:51] -rw-------. 1 boincer umatlas       822 Jul 27 11:02 pilotlog.txt
[2025-07-27 11:02:51] -rw-------. 1 boincer umatlas    866218 Jul 27 11:02 log.45743349._045654.job.log.1
[2025-07-27 11:02:51] -rw-------. 1 boincer umatlas       357 Jul 27 11:02 output.list
[2025-07-27 11:02:51] -rw-r--r--. 1 boincer umatlas       620 Jul 27 11:02 runtime_log
[2025-07-27 11:02:51] -rw-------. 1 boincer umatlas   1228800 Jul 27 11:02 result.tar.gz
[2025-07-27 11:02:51] -rw-r--r--. 1 boincer umatlas      8661 Jul 27 11:02 runtime_log.err
[2025-07-27 11:02:51] -rw-------. 1 boincer umatlas       654 Jul 27 11:02 OZiNDm1t9z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmfTULDmcJWRnm.diag
[2025-07-27 11:02:51] -rw-r--r--. 1 boincer umatlas     21351 Jul 27 11:02 stderr.txt
[2025-07-27 11:02:51] HITS file was successfully produced:
[2025-07-27 11:02:51] -rw-------. 1 boincer umatlas 210295374 Jul 27 11:01 shared/HITS.pool.root.1
[2025-07-27 11:02:51]  *** Contents of shared directory: ***
[2025-07-27 11:02:51] total 351324
[2025-07-27 11:02:51] -rw-r--r--. 2 boincer umatlas 147664349 Jul 27 08:09 ATLAS.root_0
[2025-07-27 11:02:51] -rw-r--r--. 2 boincer umatlas    542896 Jul 27 08:09 input.tar.gz
[2025-07-27 11:02:51] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 08:09 start_atlas.sh
[2025-07-27 11:02:51] -rw-------. 1 boincer umatlas 210295374 Jul 27 11:01 HITS.pool.root.1
[2025-07-27 11:02:51] -rw-------. 1 boincer umatlas   1228800 Jul 27 11:02 result.tar.gz
11:02:53 (931804): run_atlas exited; CPU time 59109.265021
11:02:53 (931804): called boinc_finish(0)

</stderr_txt>
]]>

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