Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:33:16 (547880): wrapper (7.7.26015): starting
02:33:16 (547880): wrapper: running run_atlas (--nthreads 3)
[2025-07-28 02:33:16] Arguments: --nthreads 3
[2025-07-28 02:33:16] Threads: 3
[2025-07-28 02:33:16] Checking for CVMFS
[2025-07-28 02:33:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 02:33:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 02:33:16] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 02:33:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 02:33:16] 2.9.2.0 2452624 8895 88044 148829 1 57 30672019 36864001 0 130560 0 6054416 99.989 320822 2253 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-07-28 02:33:16] CVMFS is ok
[2025-07-28 02:33:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 02:33:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 02:33:16] Further information can be found at the LHC@home message board.
[2025-07-28 02:33:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 02:33:16] Checking for apptainer binary...
[2025-07-28 02:33:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 02:33:16] Running /usr/bin/apptainer --version
[2025-07-28 02:33:16] apptainer version 1.4.1-1.1
[2025-07-28 02:33:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 02:33:16] thA305
[2025-07-28 02:33:16] apptainer works
[2025-07-28 02:33:16] Set ATHENA_PROC_NUMBER=3
[2025-07-28 02:33:16] Set ATHENA_CORE_NUMBER=3
[2025-07-28 02:33:16] Starting ATLAS job with PandaID=6746818089
[2025-07-28 02:33:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 04:15:30]  *** The last 200 lines of the pilot log: ***
[2025-07-28 04:15:30] 2025-07-28 02:14:55,792 | INFO     | executing command: lscpu
[2025-07-28 04:15:30] 2025-07-28 02:14:55,805 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 04:15:30] 2025-07-28 02:14:57,826 | INFO     | monitor loop #468: job 0:6746818089 is in state 'finished'
[2025-07-28 04:15:30] 2025-07-28 02:14:57,827 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 04:15:30] 2025-07-28 02:14:57,956 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-28 04:15:30] 2025-07-28 02:14:57,957 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3647.8002500000002
[2025-07-28 04:15:30] 2025-07-28 02:14:57,958 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6746818089/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 04:15:30] 2025-07-28 02:14:57,959 | INFO     | extracted standard info from prmon json
[2025-07-28 04:15:30] 2025-07-28 02:14:57,959 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 04:15:30] 2025-07-28 02:14:57,959 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 04:15:30] 2025-07-28 02:14:57,959 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 04:15:30] 2025-07-28 02:14:57,959 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 04:15:30] 2025-07-28 02:14:57,960 | INFO     | fitting pss+swap vs Time
[2025-07-28 04:15:30] 2025-07-28 02:14:57,960 | INFO     | sum of square deviations: 310052325.0
[2025-07-28 04:15:30] 2025-07-28 02:14:57,960 | INFO     | sum of deviations: -5000186287.000001
[2025-07-28 04:15:30] 2025-07-28 02:14:57,960 | INFO     | mean x: 1753665839.5
[2025-07-28 04:15:30] 2025-07-28 02:14:57,960 | INFO     | mean y: 2418228.46
[2025-07-28 04:15:30] 2025-07-28 02:14:57,960 | INFO     | -- intersect: 28283631351.594116
[2025-07-28 04:15:30] 2025-07-28 02:14:57,960 | INFO     | intersect: 28283631351.594116
[2025-07-28 04:15:30] 2025-07-28 02:14:57,960 | INFO     | chi2: 1.5907048524176666
[2025-07-28 04:15:30] 2025-07-28 02:14:57,960 | INFO     | sum of square deviations: 265828240.0
[2025-07-28 04:15:30] 2025-07-28 02:14:57,960 | INFO     | sum of deviations: -4109722682.999998
[2025-07-28 04:15:30] 2025-07-28 02:14:57,960 | INFO     | mean x: 1753665687.0
[2025-07-28 04:15:30] 2025-07-28 02:14:57,960 | INFO     | mean y: 2421306.642105263
[2025-07-28 04:15:30] 2025-07-28 02:14:57,960 | INFO     | -- intersect: 27114212184.32566
[2025-07-28 04:15:30] 2025-07-28 02:14:57,960 | INFO     | intersect: 27114212184.32566
[2025-07-28 04:15:30] 2025-07-28 02:14:57,960 | INFO     | chi2: 1.5920248319064356
[2025-07-28 04:15:30] 2025-07-28 02:14:57,960 | INFO     | current chi2=1.5920248319064356 (change=-0.08298079224205879 %)
[2025-07-28 04:15:30] 2025-07-28 02:14:57,961 | INFO     | right removable region: 94
[2025-07-28 04:15:30] 2025-07-28 02:14:57,961 | INFO     | sum of square deviations: 265828240.0
[2025-07-28 04:15:30] 2025-07-28 02:14:57,961 | INFO     | sum of deviations: -17640131158.0
[2025-07-28 04:15:30] 2025-07-28 02:14:57,961 | INFO     | mean x: 1753665992.0
[2025-07-28 04:15:30] 2025-07-28 02:14:57,961 | INFO     | mean y: 2460501.1052631577
[2025-07-28 04:15:30] 2025-07-28 02:14:57,961 | INFO     | -- intersect: 116374212825.8552
[2025-07-28 04:15:30] 2025-07-28 02:14:57,961 | INFO     | intersect: 116374212825.8552
[2025-07-28 04:15:30] 2025-07-28 02:14:57,961 | INFO     | chi2: 0.0918488910646135
[2025-07-28 04:15:30] 2025-07-28 02:14:57,961 | INFO     | current chi2=0.0918488910646135 (change=94.2258998628806 %)
[2025-07-28 04:15:30] 2025-07-28 02:14:57,961 | INFO     | sum of square deviations: 226022842.5
[2025-07-28 04:15:30] 2025-07-28 02:14:57,961 | INFO     | sum of deviations: -15493282731.500006
[2025-07-28 04:15:30] 2025-07-28 02:14:57,961 | INFO     | mean x: 1753666144.5
[2025-07-28 04:15:30] 2025-07-28 02:14:57,961 | INFO     | mean y: 2452238.5222222223
[2025-07-28 04:15:30] 2025-07-28 02:14:57,961 | INFO     | -- intersect: 120211742117.69913
[2025-07-28 04:15:30] 2025-07-28 02:14:57,961 | INFO     | intersect: 120211742117.69913
[2025-07-28 04:15:30] 2025-07-28 02:14:57,961 | INFO     | chi2: 0.09061947217036843
[2025-07-28 04:15:30] 2025-07-28 02:14:57,961 | INFO     | current chi2=0.09061947217036843 (change=1.338523394234772 %)
[2025-07-28 04:15:30] 2025-07-28 02:14:57,961 | INFO     | left removable region: 20
[2025-07-28 04:15:30] 2025-07-28 02:14:57,961 | INFO     | sum of square deviations: 125630262.5
[2025-07-28 04:15:30] 2025-07-28 02:14:57,962 | INFO     | sum of deviations: -9373371172.5
[2025-07-28 04:15:30] 2025-07-28 02:14:57,962 | INFO     | mean x: 1753666266.5
[2025-07-28 04:15:30] 2025-07-28 02:14:57,962 | INFO     | mean y: 2434802.8513513515
[2025-07-28 04:15:30] 2025-07-28 02:14:57,962 | INFO     | -- intersect: 130844832975.79794
[2025-07-28 04:15:30] 2025-07-28 02:14:57,962 | INFO     | intersect: 130844832975.79794
[2025-07-28 04:15:30] 2025-07-28 02:14:57,962 | INFO     | chi2: 0.08124684142428867
[2025-07-28 04:15:30] 2025-07-28 02:14:57,962 | INFO     | -- intersect: 130844832975.79794
[2025-07-28 04:15:30] 2025-07-28 02:14:57,962 | INFO     | current memory leak: -74.61 B/s (using 74 data points, chi2=0.08)
[2025-07-28 04:15:30] 2025-07-28 02:14:57,962 | INFO     | could have reported an average CPU frequency of 3869 MHz (7 samples)
[2025-07-28 04:15:30] 2025-07-28 02:14:57,962 | INFO     | ..............................
[2025-07-28 04:15:30] 2025-07-28 02:14:57,962 | INFO     | . Timing measurements:
[2025-07-28 04:15:30] 2025-07-28 02:14:57,962 | INFO     | . get job = 0 s
[2025-07-28 04:15:30] 2025-07-28 02:14:57,962 | INFO     | . initial setup = 1 s
[2025-07-28 04:15:30] 2025-07-28 02:14:57,962 | INFO     | . payload setup = 3 s
[2025-07-28 04:15:30] 2025-07-28 02:14:57,962 | INFO     | . stage-in = 0 s
[2025-07-28 04:15:30] 2025-07-28 02:14:57,962 | INFO     | . payload execution = 6073 s
[2025-07-28 04:15:30] 2025-07-28 02:14:57,962 | INFO     | . stage-out = 0 s
[2025-07-28 04:15:30] 2025-07-28 02:14:57,962 | INFO     | . log creation = 0 s
[2025-07-28 04:15:30] 2025-07-28 02:14:57,962 | INFO     | ..............................
[2025-07-28 04:15:30] 2025-07-28 02:14:57,993 | INFO     | 
[2025-07-28 04:15:30] 2025-07-28 02:14:57,993 | INFO     | job summary report
[2025-07-28 04:15:30] 2025-07-28 02:14:57,993 | INFO     | --------------------------------------------------
[2025-07-28 04:15:30] 2025-07-28 02:14:57,993 | INFO     | PanDA job id: 6746818089
[2025-07-28 04:15:30] 2025-07-28 02:14:57,993 | INFO     | task id: 45758813
[2025-07-28 04:15:30] 2025-07-28 02:14:57,993 | INFO     | errors: (none)
[2025-07-28 04:15:30] 2025-07-28 02:14:57,993 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 04:15:30] 2025-07-28 02:14:57,993 | INFO     | pilot state: finished 
[2025-07-28 04:15:30] 2025-07-28 02:14:57,993 | INFO     | transexitcode: 0
[2025-07-28 04:15:30] 2025-07-28 02:14:57,993 | INFO     | exeerrorcode: 0
[2025-07-28 04:15:30] 2025-07-28 02:14:57,993 | INFO     | exeerrordiag: 
[2025-07-28 04:15:30] 2025-07-28 02:14:57,993 | INFO     | exitcode: 0
[2025-07-28 04:15:30] 2025-07-28 02:14:57,993 | INFO     | exitmsg: OK
[2025-07-28 04:15:30] 2025-07-28 02:14:57,993 | INFO     | cpuconsumptiontime: 17637 s
[2025-07-28 04:15:30] 2025-07-28 02:14:57,993 | INFO     | nevents: 400
[2025-07-28 04:15:30] 2025-07-28 02:14:57,993 | INFO     | neventsw: 0
[2025-07-28 04:15:30] 2025-07-28 02:14:57,993 | INFO     | pid: 558009
[2025-07-28 04:15:30] 2025-07-28 02:14:57,993 | INFO     | pgrp: 558009
[2025-07-28 04:15:30] 2025-07-28 02:14:57,993 | INFO     | corecount: 3
[2025-07-28 04:15:30] 2025-07-28 02:14:57,993 | INFO     | event service: False
[2025-07-28 04:15:30] 2025-07-28 02:14:57,993 | INFO     | sizes: {0: 2397468, 2: 2397730, 10: 2397758, 6080: 2433863, 6081: 2433863, 6083: 2434057}
[2025-07-28 04:15:30] 2025-07-28 02:14:57,993 | INFO     | --------------------------------------------------
[2025-07-28 04:15:30] 2025-07-28 02:14:57,993 | INFO     | 
[2025-07-28 04:15:30] 2025-07-28 02:14:57,993 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-07-28 04:15:30] 2025-07-28 02:14:58,005 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 04:15:30] 2025-07-28 02:14:58,005 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 04:15:30] 2025-07-28 02:14:58,005 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 04:15:30] 2025-07-28 02:14:58,005 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 04:15:30] 2025-07-28 02:14:58,005 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 04:15:30] 2025-07-28 02:14:58,005 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 04:15:30] 2025-07-28 02:14:58,005 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 04:15:30] 2025-07-28 02:14:58,006 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 04:15:30] 2025-07-28 02:14:58,006 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 04:15:30] 2025-07-28 02:14:58,006 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 04:15:30] 2025-07-28 02:14:58,006 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 04:15:30] 2025-07-28 02:14:58,006 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 04:15:30] 2025-07-28 02:14:58,006 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 04:15:30] 2025-07-28 02:14:58,006 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 04:15:30] 2025-07-28 02:14:58,006 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 04:15:30] 2025-07-28 02:14:58,006 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 04:15:30] 2025-07-28 02:14:58,006 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 04:15:30] 2025-07-28 02:14:58,006 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 04:15:30] 2025-07-28 02:14:58,006 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 04:15:30] 2025-07-28 02:14:58,006 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 04:15:30] 2025-07-28 02:14:58,006 | INFO     | job 6746818089 has completed (purged errors)
[2025-07-28 04:15:30] 2025-07-28 02:14:58,006 | INFO     | overall cleanup function is called
[2025-07-28 04:15:30] 2025-07-28 02:14:59,013 | INFO     | --- collectZombieJob: --- 10, [558009]
[2025-07-28 04:15:30] 2025-07-28 02:14:59,013 | INFO     | zombie collector waiting for pid 558009
[2025-07-28 04:15:30] 2025-07-28 02:14:59,013 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 04:15:30] 2025-07-28 02:14:59,013 | INFO     | collected zombie processes
[2025-07-28 04:15:30] 2025-07-28 02:14:59,013 | INFO     | will attempt to kill all subprocesses of pid=558009
[2025-07-28 04:15:30] 2025-07-28 02:14:59,059 | INFO     | process IDs to be killed: [558009] (in reverse order)
[2025-07-28 04:15:30] 2025-07-28 02:14:59,083 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 04:15:30] 2025-07-28 02:14:59,083 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 04:15:30] 2025-07-28 02:14:59,085 | INFO     | did not find any defunct processes belonging to 558009
[2025-07-28 04:15:30] 2025-07-28 02:14:59,086 | INFO     | did not find any defunct processes belonging to 558009
[2025-07-28 04:15:30] 2025-07-28 02:14:59,086 | INFO     | ready for new job
[2025-07-28 04:15:30] 2025-07-28 02:14:59,086 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 04:15:30] 2025-07-28 02:14:59,087 | INFO     | ***************************************
[2025-07-28 04:15:30] 2025-07-28 02:14:59,087 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 04:15:30] 2025-07-28 02:14:59,087 | INFO     | ***************************************
[2025-07-28 04:15:30] 2025-07-28 02:14:59,087 | INFO     | 
[2025-07-28 04:15:30] 2025-07-28 02:14:59,087 | INFO     | architecture information:
[2025-07-28 04:15:30] 2025-07-28 02:14:59,088 | INFO     | executing command: cat /etc/os-release
[2025-07-28 04:15:30] 2025-07-28 02:14:59,096 | INFO     | cat /etc/os-release:
[2025-07-28 04:15:30] NAME="CentOS Linux"
[2025-07-28 04:15:30] VERSION="7 (Core)"
[2025-07-28 04:15:30] ID="centos"
[2025-07-28 04:15:30] ID_LIKE="rhel fedora"
[2025-07-28 04:15:30] VERSION_ID="7"
[2025-07-28 04:15:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 04:15:30] ANSI_COLOR="0;31"
[2025-07-28 04:15:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 04:15:30] HOME_URL="https://www.centos.org/"
[2025-07-28 04:15:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 04:15:30] 
[2025-07-28 04:15:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 04:15:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 04:15:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 04:15:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 04:15:30] 
[2025-07-28 04:15:30] 2025-07-28 02:14:59,096 | INFO     | ***************************************
[2025-07-28 04:15:30] 2025-07-28 02:14:59,599 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-07-28 04:15:30] 2025-07-28 02:14:59,612 | INFO     | sufficient remaining disk space (228967055360 B)
[2025-07-28 04:15:30] 2025-07-28 02:14:59,612 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 04:15:30] 2025-07-28 02:14:59,613 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 04:15:30] 2025-07-28 02:14:59,613 | INFO     | update_server=False
[2025-07-28 04:15:30] 2025-07-28 02:14:59,613 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 04:15:30] 2025-07-28 02:14:59,613 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 04:15:30] 2025-07-28 02:14:59,613 | INFO     | aborting loop
[2025-07-28 04:15:30] 2025-07-28 02:14:59,613 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 04:15:30] 2025-07-28 02:15:00,006 | INFO     | job.realtimelogging is not enabled
[2025-07-28 04:15:30] 2025-07-28 02:15:00,153 | INFO     | all payload control threads have been joined
[2025-07-28 04:15:30] 2025-07-28 02:15:00,154 | INFO     | all data control threads have been joined
[2025-07-28 04:15:30] 2025-07-28 02:15:00,500 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 04:15:30] 2025-07-28 02:15:00,618 | INFO     | [job] retrieve thread has finished
[2025-07-28 04:15:30] 2025-07-28 02:15:00,619 | INFO     | [job] job monitor thread has finished
[2025-07-28 04:15:30] 2025-07-28 02:15:00,619 | INFO     | [job] queue monitor thread has finished
[2025-07-28 04:15:30] 2025-07-28 02:15:00,700 | INFO     | all job control threads have been joined
[2025-07-28 04:15:30] 2025-07-28 02:15:00,791 | INFO     | [data] copytool_in thread has finished
[2025-07-28 04:15:30] 2025-07-28 02:15:01,011 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 04:15:30] 2025-07-28 02:15:01,159 | INFO     | [payload] control thread has finished
[2025-07-28 04:15:30] 2025-07-28 02:15:01,160 | INFO     | [data] control thread has finished
[2025-07-28 04:15:30] 2025-07-28 02:15:01,421 | INFO     | [job] validate thread has finished
[2025-07-28 04:15:30] 2025-07-28 02:15:01,463 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 04:15:30] 2025-07-28 02:15:01,486 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 04:15:30] 2025-07-28 02:15:01,494 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 04:15:30] 2025-07-28 02:15:01,569 | INFO     | [payload] failed_post thread has finished
[2025-07-28 04:15:30] 2025-07-28 02:15:01,706 | INFO     | [job] control thread has finished
[2025-07-28 04:15:30] 2025-07-28 02:15:01,798 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 04:15:30] 2025-07-28 02:15:02,103 | INFO     | [payload] validate_post thread has finished
[2025-07-28 04:15:30] 2025-07-28 02:15:02,505 | INFO     | [data] copytool_out thread has finished
[2025-07-28 04:15:30] 2025-07-28 02:15:05,805 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 04:15:30] 2025-07-28 02:15:06,486 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139845845567296)>', '<ExcThread(monitor, started 139845133395712)>']
[2025-07-28 04:15:30] 2025-07-28 02:15:11,511 | INFO     | all workflow threads have been joined
[2025-07-28 04:15:30] 2025-07-28 02:15:11,512 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 04:15:30] 2025-07-28 02:15:11,512 | INFO     | traces error code: 0
[2025-07-28 04:15:30] 2025-07-28 02:15:11,512 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 04:15:30] 2025-07-28 02:15:30,386 | INFO     | PID=551517 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-28 04:15:30] 2025-07-28 02:15:30,386 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 04:15:30] 2025-07-28 02:15:30,386 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 04:15:30] 2025-07-28 02:15:30,386 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 04:15:30] 2025-07-28 02:15:30,386 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 04:15:30] 2025-07-28 02:15:30,386 | INFO     | [monitor] control thread has ended
[2025-07-28 04:15:30] 2025-07-28 02:15:30,440 [wrapper] ==== pilot stdout END ====
[2025-07-28 04:15:30] 2025-07-28 02:15:30,443 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 04:15:30] 2025-07-28 02:15:30,445 [wrapper] pilotpid: 551517
[2025-07-28 04:15:30] 2025-07-28 02:15:30,447 [wrapper] Pilot exit status: 0
[2025-07-28 04:15:30] 2025-07-28 02:15:30,454 [wrapper] pandaids: 6746818089
[2025-07-28 04:15:30] 2025-07-28 02:15:30,471 [wrapper] cleanup supervisor_pilot  570386 551518
[2025-07-28 04:15:30] 2025-07-28 02:15:30,474 [wrapper] Test setup, not cleaning
[2025-07-28 04:15:30] 2025-07-28 02:15:30,476 [wrapper] apfmon messages muted
[2025-07-28 04:15:30] 2025-07-28 02:15:30,478 [wrapper] ==== wrapper stdout END ====
[2025-07-28 04:15:30] 2025-07-28 02:15:30,480 [wrapper] ==== wrapper stderr END ====
[2025-07-28 04:15:30]  *** Error codes and diagnostics ***
[2025-07-28 04:15:30]     "exeErrorCode": 0,
[2025-07-28 04:15:30]     "exeErrorDiag": "",
[2025-07-28 04:15:30]     "pilotErrorCode": 0,
[2025-07-28 04:15:30]     "pilotErrorDiag": "",
[2025-07-28 04:15:30]  *** Listing of results directory ***
[2025-07-28 04:15:30] total 410984
[2025-07-28 04:15:30] -rw-r--r-- 1 boinc boinc    530466 Jul 27 11:06 pilot3.tar.gz
[2025-07-28 04:15:30] -rwx------ 1 boinc boinc     36292 Jul 27 11:15 runpilot2-wrapper.sh
[2025-07-28 04:15:30] -rw-r--r-- 1 boinc boinc      5112 Jul 27 11:15 queuedata.json
[2025-07-28 04:15:30] -rw-r--r-- 1 boinc boinc       100 Jul 28 02:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 04:15:30] -rwxr-xr-x 1 boinc boinc      7986 Jul 28 02:33 run_atlas
[2025-07-28 04:15:30] -rw-r--r-- 1 boinc boinc       105 Jul 28 02:33 job.xml
[2025-07-28 04:15:30] -rw-r--r-- 2 boinc boinc 242442890 Jul 28 02:33 EVNT.45758811._000003.pool.root.1
[2025-07-28 04:15:30] -rw-r--r-- 2 boinc boinc    542872 Jul 28 02:33 input.tar.gz
[2025-07-28 04:15:30] -rw-r--r-- 2 boinc boinc     15095 Jul 28 02:33 start_atlas.sh
[2025-07-28 04:15:30] drwxrwx--x 2 boinc boinc      4096 Jul 28 02:33 shared
[2025-07-28 04:15:30] -rw-r--r-- 1 boinc boinc         0 Jul 28 02:33 boinc_setup_complete
[2025-07-28 04:15:30] -rw-r--r-- 1 boinc boinc      6517 Jul 28 02:33 init_data.xml
[2025-07-28 04:15:30] -rw-r--r-- 1 boinc boinc         0 Jul 28 02:33 boinc_lockfile
[2025-07-28 04:15:30] -rw-r--r-- 1 boinc boinc      2558 Jul 28 02:33 pandaJob.out
[2025-07-28 04:15:30] -rw------- 1 boinc boinc    980125 Jul 28 02:33 agis_schedconf.cvmfs.json
[2025-07-28 04:15:30] -rw------- 1 boinc boinc   1593052 Jul 28 02:33 agis_ddmendpoints.agis.ALL.json
[2025-07-28 04:15:30] drwx------ 4 boinc boinc      4096 Jul 28 02:33 pilot3
[2025-07-28 04:15:30] -rw-r--r-- 1 boinc boinc       529 Jul 28 04:14 boinc_task_state.xml
[2025-07-28 04:15:30] -rw------- 1 boinc boinc 172847273 Jul 28 04:14 HITS.45758813._000074.pool.root.1
[2025-07-28 04:15:30] -rw------- 1 boinc boinc      1019 Jul 28 04:14 memory_monitor_summary.json
[2025-07-28 04:15:30] -rw------- 1 boinc boinc        95 Jul 28 04:14 pilot_heartbeat.json
[2025-07-28 04:15:30] -rw------- 1 boinc boinc    253588 Jul 28 04:14 log.45758813._000074.job.log.tgz.1
[2025-07-28 04:15:30] -rw------- 1 boinc boinc      7751 Jul 28 04:14 heartbeat.json
[2025-07-28 04:15:30] -rw-r--r-- 1 boinc boinc      8192 Jul 28 04:15 boinc_mmap_file
[2025-07-28 04:15:30] -rw-r--r-- 1 boinc boinc        27 Jul 28 04:15 wrapper_checkpoint.txt
[2025-07-28 04:15:30] -rw------- 1 boinc boinc       746 Jul 28 04:15 pilotlog.txt
[2025-07-28 04:15:30] -rw------- 1 boinc boinc    583808 Jul 28 04:15 log.45758813._000074.job.log.1
[2025-07-28 04:15:30] -rw------- 1 boinc boinc       357 Jul 28 04:15 output.list
[2025-07-28 04:15:30] -rw-r--r-- 1 boinc boinc       620 Jul 28 04:15 runtime_log
[2025-07-28 04:15:30] -rw------- 1 boinc boinc    860160 Jul 28 04:15 result.tar.gz
[2025-07-28 04:15:30] -rw-r--r-- 1 boinc boinc      8734 Jul 28 04:15 runtime_log.err
[2025-07-28 04:15:30] -rw------- 1 boinc boinc       659 Jul 28 04:15 eHWMDm8eC07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmJtULDmyUn8Ro.diag
[2025-07-28 04:15:30] -rw-r--r-- 1 boinc boinc     21153 Jul 28 04:15 stderr.txt
[2025-07-28 04:15:30] HITS file was successfully produced:
[2025-07-28 04:15:30] -rw------- 1 boinc boinc 172847273 Jul 28 04:14 shared/HITS.pool.root.1
[2025-07-28 04:15:30]  *** Contents of shared directory: ***
[2025-07-28 04:15:30] total 406960
[2025-07-28 04:15:30] -rw-r--r-- 2 boinc boinc 242442890 Jul 28 02:33 ATLAS.root_0
[2025-07-28 04:15:30] -rw-r--r-- 2 boinc boinc    542872 Jul 28 02:33 input.tar.gz
[2025-07-28 04:15:30] -rw-r--r-- 2 boinc boinc     15095 Jul 28 02:33 start_atlas.sh
[2025-07-28 04:15:30] -rw------- 1 boinc boinc 172847273 Jul 28 04:14 HITS.pool.root.1
[2025-07-28 04:15:30] -rw------- 1 boinc boinc    860160 Jul 28 04:15 result.tar.gz
04:15:32 (547880): run_atlas exited; CPU time 17660.535776
04:15:32 (547880): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN