Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:49:43 (452748): wrapper (7.7.26015): starting
02:49:43 (452748): wrapper: running run_atlas (--nthreads 6)
[2025-07-28 02:49:43] Arguments: --nthreads 6
[2025-07-28 02:49:43] Threads: 6
[2025-07-28 02:49:43] Checking for CVMFS
[2025-07-28 02:49:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 02:49:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 02:49:43] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 02:49:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 02:49:44] 2.11.5.0 2646 675 68776 148819 3 187 29483927 52428801 885 130560 0 1236689 99.996 22626 14 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-07-28 02:49:44] CVMFS is ok
[2025-07-28 02:49:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 02:49:44] Checking for apptainer binary...
[2025-07-28 02:49:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 02:49:44] Running /usr/bin/apptainer --version
[2025-07-28 02:49:44] apptainer version 1.3.6-1.el9
[2025-07-28 02:49:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 02:49:44] testio002
[2025-07-28 02:49:44] apptainer works
[2025-07-28 02:49:44] Set ATHENA_PROC_NUMBER=6
[2025-07-28 02:49:44] Set ATHENA_CORE_NUMBER=6
[2025-07-28 02:49:44] Starting ATLAS job with PandaID=6745968031
[2025-07-28 02:49:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 04:19:38]  *** The last 200 lines of the pilot log: ***
[2025-07-28 04:19:38]  is_tar=False
[2025-07-28 04:19:38]  lfn=log.45759215._000072.job.log.tgz.1
[2025-07-28 04:19:38]  mtime=0
[2025-07-28 04:19:38]  protocol_id=None
[2025-07-28 04:19:38]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 04:19:38]  replicas=None
[2025-07-28 04:19:38]  scope=mc23_13p6TeV
[2025-07-28 04:19:38]  status=None
[2025-07-28 04:19:38]  status_code=0
[2025-07-28 04:19:38]  storage_token=
[2025-07-28 04:19:38]  surl=/var/lib/boinc/slots/3/PanDA_Pilot-6745968031/log.45759215._000072.job.log.tgz.1
[2025-07-28 04:19:38]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5e/4c/log.45759215._000072.job.log.tgz.1
[2025-07-28 04:19:38]  workdir=None
[2025-07-28 04:19:38] ]
[2025-07-28 04:19:38] 2025-07-27 19:19:01,947 | INFO     | transferring file log.45759215._000072.job.log.tgz.1 from /var/lib/boinc/slots/3/PanDA_Pilot-6745968031/log.45759215._000072.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-07-28 04:19:38] 2025-07-27 19:19:01,947 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/3/PanDA_Pilot-6745968031/log.45759215._000072.job.log.tgz.1 /var/lib/boinc/slots/3/log.45759215._000072.job
[2025-07-28 04:19:38] 2025-07-27 19:19:01,953 | INFO     | adding to output.list: log.45759215._000072.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5e/4c/log.45759215._000072.job.log.tg
[2025-07-28 04:19:38] 2025-07-27 19:19:01,954 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 04:19:38] 2025-07-27 19:19:01,954 | INFO     | summary of transferred files:
[2025-07-28 04:19:38] 2025-07-27 19:19:01,954 | INFO     |  -- lfn=log.45759215._000072.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 04:19:38] 2025-07-27 19:19:01,954 | INFO     | stage-out finished correctly
[2025-07-28 04:19:38] 2025-07-27 19:19:03,572 | INFO     | monitor loop #398: job 0:6745968031 is in state 'finished'
[2025-07-28 04:19:38] 2025-07-27 19:19:03,573 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 04:19:38] 2025-07-27 19:19:04,222 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 04:19:38] 2025-07-27 19:19:06,034 | INFO     | job 6745968031 has state=finished
[2025-07-28 04:19:38] 2025-07-27 19:19:06,035 | INFO     | preparing for final server update for job 6745968031 in state='finished'
[2025-07-28 04:19:38] 2025-07-27 19:19:06,035 | INFO     | this job has now completed (state=finished)
[2025-07-28 04:19:38] 2025-07-27 19:19:06,036 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 04:19:38] 2025-07-27 19:19:06,036 | INFO     | log transfer has been attempted: DONE
[2025-07-28 04:19:38] 2025-07-27 19:19:06,036 | INFO     | job 6745968031 has finished - writing final server update
[2025-07-28 04:19:38] 2025-07-27 19:19:06,036 | INFO     | total number of processed events: 400 (read)
[2025-07-28 04:19:38] 2025-07-27 19:19:06,038 | INFO     | executing command: lscpu
[2025-07-28 04:19:38] 2025-07-27 19:19:06,059 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 04:19:38] 2025-07-27 19:19:06,075 | INFO     | monitor loop #399: job 0:6745968031 is in state 'finished'
[2025-07-28 04:19:38] 2025-07-27 19:19:06,075 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 04:19:38] 2025-07-27 19:19:06,454 | INFO     | PID=456483 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-28 04:19:38] 2025-07-27 19:19:06,454 | INFO     | .. there are 2 such processes running
[2025-07-28 04:19:38] 2025-07-27 19:19:06,955 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-28 04:19:38] 2025-07-27 19:19:06,956 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 4256.582437499999
[2025-07-28 04:19:38] 2025-07-27 19:19:06,957 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6745968031/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 04:19:38] 2025-07-27 19:19:06,957 | INFO     | extracted standard info from prmon json
[2025-07-28 04:19:38] 2025-07-27 19:19:06,957 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 04:19:38] 2025-07-27 19:19:06,957 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 04:19:38] 2025-07-27 19:19:06,957 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 04:19:38] 2025-07-27 19:19:06,957 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 04:19:38] 2025-07-27 19:19:06,958 | INFO     | fitting pss+swap vs Time
[2025-07-28 04:19:38] 2025-07-27 19:19:06,958 | INFO     | sum of square deviations: 164765880.0
[2025-07-28 04:19:38] 2025-07-27 19:19:06,958 | INFO     | sum of deviations: 17671759963.0
[2025-07-28 04:19:38] 2025-07-27 19:19:06,958 | INFO     | mean x: 1753641353.0
[2025-07-28 04:19:38] 2025-07-27 19:19:06,958 | INFO     | mean y: 2364608.2716049384
[2025-07-28 04:19:38] 2025-07-27 19:19:06,958 | INFO     | -- intersect: -188082262205.28076
[2025-07-28 04:19:38] 2025-07-27 19:19:06,958 | INFO     | intersect: -188082262205.28076
[2025-07-28 04:19:38] 2025-07-27 19:19:06,958 | INFO     | chi2: 1.4589322192338088
[2025-07-28 04:19:38] 2025-07-27 19:19:06,958 | INFO     | -- intersect: -188082262205.28076
[2025-07-28 04:19:38] 2025-07-27 19:19:06,958 | INFO     | current memory leak: 107.25 B/s (using 81 data points, chi2=1.46)
[2025-07-28 04:19:38] 2025-07-27 19:19:06,958 | INFO     | could have reported an average CPU frequency of 4289 MHz (6 samples)
[2025-07-28 04:19:38] 2025-07-27 19:19:06,958 | INFO     | ..............................
[2025-07-28 04:19:38] 2025-07-27 19:19:06,959 | INFO     | . Timing measurements:
[2025-07-28 04:19:38] 2025-07-27 19:19:06,959 | INFO     | . get job = 0 s
[2025-07-28 04:19:38] 2025-07-27 19:19:06,959 | INFO     | . initial setup = 7 s
[2025-07-28 04:19:38] 2025-07-27 19:19:06,959 | INFO     | . payload setup = 1 s
[2025-07-28 04:19:38] 2025-07-27 19:19:06,959 | INFO     | . stage-in = 0 s
[2025-07-28 04:19:38] 2025-07-27 19:19:06,959 | INFO     | . payload execution = 5331 s
[2025-07-28 04:19:38] 2025-07-27 19:19:06,959 | INFO     | . stage-out = 0 s
[2025-07-28 04:19:38] 2025-07-27 19:19:06,959 | INFO     | . log creation = 0 s
[2025-07-28 04:19:38] 2025-07-27 19:19:06,959 | INFO     | ..............................
[2025-07-28 04:19:38] 2025-07-27 19:19:07,268 | INFO     | 
[2025-07-28 04:19:38] 2025-07-27 19:19:07,269 | INFO     | job summary report
[2025-07-28 04:19:38] 2025-07-27 19:19:07,269 | INFO     | --------------------------------------------------
[2025-07-28 04:19:38] 2025-07-27 19:19:07,269 | INFO     | PanDA job id: 6745968031
[2025-07-28 04:19:38] 2025-07-27 19:19:07,269 | INFO     | task id: 45759215
[2025-07-28 04:19:38] 2025-07-27 19:19:07,269 | INFO     | errors: (none)
[2025-07-28 04:19:38] 2025-07-27 19:19:07,269 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 04:19:38] 2025-07-27 19:19:07,269 | INFO     | pilot state: finished 
[2025-07-28 04:19:38] 2025-07-27 19:19:07,270 | INFO     | transexitcode: 0
[2025-07-28 04:19:38] 2025-07-27 19:19:07,270 | INFO     | exeerrorcode: 0
[2025-07-28 04:19:38] 2025-07-27 19:19:07,270 | INFO     | exeerrordiag: 
[2025-07-28 04:19:38] 2025-07-27 19:19:07,270 | INFO     | exitcode: 0
[2025-07-28 04:19:38] 2025-07-27 19:19:07,270 | INFO     | exitmsg: OK
[2025-07-28 04:19:38] 2025-07-27 19:19:07,270 | INFO     | cpuconsumptiontime: 27584 s
[2025-07-28 04:19:38] 2025-07-27 19:19:07,270 | INFO     | nevents: 400
[2025-07-28 04:19:38] 2025-07-27 19:19:07,270 | INFO     | neventsw: 0
[2025-07-28 04:19:38] 2025-07-27 19:19:07,271 | INFO     | pid: 463066
[2025-07-28 04:19:38] 2025-07-27 19:19:07,271 | INFO     | pgrp: 463066
[2025-07-28 04:19:38] 2025-07-27 19:19:07,271 | INFO     | corecount: 6
[2025-07-28 04:19:38] 2025-07-27 19:19:07,271 | INFO     | event service: False
[2025-07-28 04:19:38] 2025-07-27 19:19:07,271 | INFO     | sizes: {0: 2397490, 1: 2397752, 11: 2397780, 5335: 2424334, 5337: 2433360, 5339: 2433416, 5342: 2433738}
[2025-07-28 04:19:38] 2025-07-27 19:19:07,271 | INFO     | --------------------------------------------------
[2025-07-28 04:19:38] 2025-07-27 19:19:07,271 | INFO     | 
[2025-07-28 04:19:38] 2025-07-27 19:19:07,271 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-07-28 04:19:38] 2025-07-27 19:19:07,280 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 04:19:38] 2025-07-27 19:19:07,280 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 04:19:38] 2025-07-27 19:19:07,280 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 04:19:38] 2025-07-27 19:19:07,280 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 04:19:38] 2025-07-27 19:19:07,280 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 04:19:38] 2025-07-27 19:19:07,280 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 04:19:38] 2025-07-27 19:19:07,280 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 04:19:38] 2025-07-27 19:19:07,280 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 04:19:38] 2025-07-27 19:19:07,280 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 04:19:38] 2025-07-27 19:19:07,280 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 04:19:38] 2025-07-27 19:19:07,280 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 04:19:38] 2025-07-27 19:19:07,280 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 04:19:38] 2025-07-27 19:19:07,280 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 04:19:38] 2025-07-27 19:19:07,280 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 04:19:38] 2025-07-27 19:19:07,280 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 04:19:38] 2025-07-27 19:19:07,280 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 04:19:38] 2025-07-27 19:19:07,280 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 04:19:38] 2025-07-27 19:19:07,280 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 04:19:38] 2025-07-27 19:19:07,280 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 04:19:38] 2025-07-27 19:19:07,280 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 04:19:38] 2025-07-27 19:19:07,280 | INFO     | job 6745968031 has completed (purged errors)
[2025-07-28 04:19:38] 2025-07-27 19:19:07,280 | INFO     | overall cleanup function is called
[2025-07-28 04:19:38] 2025-07-27 19:19:08,286 | INFO     | --- collectZombieJob: --- 10, [463066]
[2025-07-28 04:19:38] 2025-07-27 19:19:08,286 | INFO     | zombie collector waiting for pid 463066
[2025-07-28 04:19:38] 2025-07-27 19:19:08,286 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 04:19:38] 2025-07-27 19:19:08,286 | INFO     | collected zombie processes
[2025-07-28 04:19:38] 2025-07-27 19:19:08,287 | INFO     | will attempt to kill all subprocesses of pid=463066
[2025-07-28 04:19:38] 2025-07-27 19:19:08,318 | INFO     | process IDs to be killed: [463066] (in reverse order)
[2025-07-28 04:19:38] 2025-07-27 19:19:08,332 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 04:19:38] 2025-07-27 19:19:08,332 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 04:19:38] 2025-07-27 19:19:08,333 | INFO     | did not find any defunct processes belonging to 463066
[2025-07-28 04:19:38] 2025-07-27 19:19:08,333 | INFO     | did not find any defunct processes belonging to 463066
[2025-07-28 04:19:38] 2025-07-27 19:19:08,333 | INFO     | ready for new job
[2025-07-28 04:19:38] 2025-07-27 19:19:08,333 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 04:19:38] 2025-07-27 19:19:08,334 | INFO     | ***************************************
[2025-07-28 04:19:38] 2025-07-27 19:19:08,334 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 04:19:38] 2025-07-27 19:19:08,334 | INFO     | ***************************************
[2025-07-28 04:19:38] 2025-07-27 19:19:08,334 | INFO     | 
[2025-07-28 04:19:38] 2025-07-27 19:19:08,334 | INFO     | architecture information:
[2025-07-28 04:19:38] 2025-07-27 19:19:08,334 | INFO     | executing command: cat /etc/os-release
[2025-07-28 04:19:38] 2025-07-27 19:19:08,338 | INFO     | cat /etc/os-release:
[2025-07-28 04:19:38] NAME="CentOS Linux"
[2025-07-28 04:19:38] VERSION="7 (Core)"
[2025-07-28 04:19:38] ID="centos"
[2025-07-28 04:19:38] ID_LIKE="rhel fedora"
[2025-07-28 04:19:38] VERSION_ID="7"
[2025-07-28 04:19:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 04:19:38] ANSI_COLOR="0;31"
[2025-07-28 04:19:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 04:19:38] HOME_URL="https://www.centos.org/"
[2025-07-28 04:19:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 04:19:38] 
[2025-07-28 04:19:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 04:19:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 04:19:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 04:19:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 04:19:38] 
[2025-07-28 04:19:38] 2025-07-27 19:19:08,338 | INFO     | ***************************************
[2025-07-28 04:19:38] 2025-07-27 19:19:08,841 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-07-28 04:19:38] 2025-07-27 19:19:08,860 | INFO     | sufficient remaining disk space (315385446400 B)
[2025-07-28 04:19:38] 2025-07-27 19:19:08,861 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 04:19:38] 2025-07-27 19:19:08,861 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 04:19:38] 2025-07-27 19:19:08,861 | INFO     | update_server=False
[2025-07-28 04:19:38] 2025-07-27 19:19:08,861 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 04:19:38] 2025-07-27 19:19:08,862 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 04:19:38] 2025-07-27 19:19:09,517 | INFO     | all payload control threads have been joined
[2025-07-28 04:19:38] 2025-07-27 19:19:09,583 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 04:19:38] 2025-07-27 19:19:09,583 | INFO     | aborting loop
[2025-07-28 04:19:38] 2025-07-27 19:19:09,635 | INFO     | all data control threads have been joined
[2025-07-28 04:19:38] 2025-07-27 19:19:09,867 | INFO     | [job] retrieve thread has finished
[2025-07-28 04:19:38] 2025-07-27 19:19:09,867 | INFO     | [job] queue monitor thread has finished
[2025-07-28 04:19:38] 2025-07-27 19:19:09,890 | INFO     | all job control threads have been joined
[2025-07-28 04:19:38] 2025-07-27 19:19:09,964 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 04:19:38] 2025-07-27 19:19:09,967 | INFO     | [job] validate thread has finished
[2025-07-28 04:19:38] 2025-07-27 19:19:09,990 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 04:19:38] 2025-07-27 19:19:10,020 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 04:19:38] 2025-07-27 19:19:10,257 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 04:19:38] 2025-07-27 19:19:10,470 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 04:19:38] 2025-07-27 19:19:10,523 | INFO     | [payload] control thread has finished
[2025-07-28 04:19:38] 2025-07-27 19:19:10,589 | INFO     | [job] job monitor thread has finished
[2025-07-28 04:19:38] 2025-07-27 19:19:10,641 | INFO     | [data] control thread has finished
[2025-07-28 04:19:38] 2025-07-27 19:19:10,809 | INFO     | [payload] failed_post thread has finished
[2025-07-28 04:19:38] 2025-07-27 19:19:10,896 | INFO     | [job] control thread has finished
[2025-07-28 04:19:38] 2025-07-27 19:19:11,150 | INFO     | [data] copytool_in thread has finished
[2025-07-28 04:19:38] 2025-07-27 19:19:11,162 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 04:19:38] 2025-07-27 19:19:11,323 | INFO     | [payload] validate_post thread has finished
[2025-07-28 04:19:38] 2025-07-27 19:19:11,996 | INFO     | [data] copytool_out thread has finished
[2025-07-28 04:19:38] 2025-07-27 19:19:14,263 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 04:19:38] 2025-07-27 19:19:15,318 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139978440111936)>', '<ExcThread(monitor, started 139977807619840)>']
[2025-07-28 04:19:38] 2025-07-27 19:19:20,344 | INFO     | all workflow threads have been joined
[2025-07-28 04:19:38] 2025-07-27 19:19:20,344 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 04:19:38] 2025-07-27 19:19:20,344 | INFO     | traces error code: 0
[2025-07-28 04:19:38] 2025-07-27 19:19:20,345 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 04:19:38] 2025-07-27 19:19:38,579 | INFO     | PID=456483 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-28 04:19:38] 2025-07-27 19:19:38,583 | INFO     | .. there are 2 such processes running
[2025-07-28 04:19:38] 2025-07-27 19:19:38,583 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 04:19:38] 2025-07-27 19:19:38,583 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 04:19:38] 2025-07-27 19:19:38,583 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 04:19:38] 2025-07-27 19:19:38,583 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 04:19:38] 2025-07-27 19:19:38,583 | INFO     | [monitor] control thread has ended
[2025-07-28 04:19:38] 2025-07-27 19:19:38,615 [wrapper] ==== pilot stdout END ====
[2025-07-28 04:19:38] 2025-07-27 19:19:38,617 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 04:19:38] 2025-07-27 19:19:38,618 [wrapper] pilotpid: 456483
[2025-07-28 04:19:38] 2025-07-27 19:19:38,618 [wrapper] Pilot exit status: 0
[2025-07-28 04:19:38] 2025-07-27 19:19:38,621 [wrapper] pandaids: 6745968031
[2025-07-28 04:19:38] 2025-07-27 19:19:38,627 [wrapper] cleanup supervisor_pilot  482728 456484
[2025-07-28 04:19:38] 2025-07-27 19:19:38,628 [wrapper] Test setup, not cleaning
[2025-07-28 04:19:38] 2025-07-27 19:19:38,629 [wrapper] apfmon messages muted
[2025-07-28 04:19:38] 2025-07-27 19:19:38,629 [wrapper] ==== wrapper stdout END ====
[2025-07-28 04:19:38] 2025-07-27 19:19:38,630 [wrapper] ==== wrapper stderr END ====
[2025-07-28 04:19:38]  *** Error codes and diagnostics ***
[2025-07-28 04:19:38]     "exeErrorCode": 0,
[2025-07-28 04:19:38]     "exeErrorDiag": "",
[2025-07-28 04:19:38]     "pilotErrorCode": 0,
[2025-07-28 04:19:38]     "pilotErrorDiag": "",
[2025-07-28 04:19:38]  *** Listing of results directory ***
[2025-07-28 04:19:38] total 374704
[2025-07-28 04:19:38] -rw-r--r--. 1 boinc boinc    530466 Jul 27 12:31 pilot3.tar.gz
[2025-07-28 04:19:38] -rwx------. 1 boinc boinc     36292 Jul 27 12:33 runpilot2-wrapper.sh
[2025-07-28 04:19:38] -rw-r--r--. 1 boinc boinc      5112 Jul 27 12:33 queuedata.json
[2025-07-28 04:19:38] -rw-r--r--. 1 boinc boinc       100 Jul 28 02:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 04:19:38] -rwxr-xr-x. 1 boinc boinc      7986 Jul 28 02:49 run_atlas
[2025-07-28 04:19:38] -rw-r--r--. 1 boinc boinc       105 Jul 28 02:49 job.xml
[2025-07-28 04:19:38] -rw-r--r--. 2 boinc boinc     15095 Jul 28 02:49 start_atlas.sh
[2025-07-28 04:19:38] drwxrwx--x. 2 boinc boinc        68 Jul 28 02:49 shared
[2025-07-28 04:19:38] -rw-r--r--. 2 boinc boinc    542886 Jul 28 02:49 input.tar.gz
[2025-07-28 04:19:38] -rw-r--r--. 1 boinc boinc      9627 Jul 28 02:49 init_data.xml
[2025-07-28 04:19:38] -rw-r--r--. 2 boinc boinc 218671317 Jul 28 02:49 EVNT.45759207._000003.pool.root.1
[2025-07-28 04:19:38] -rw-r--r--. 1 boinc boinc         0 Jul 28 02:49 boinc_lockfile
[2025-07-28 04:19:38] -rw-r--r--. 1 boinc boinc      2581 Jul 28 02:49 pandaJob.out
[2025-07-28 04:19:38] -rw-------. 1 boinc boinc    980117 Jul 28 02:49 agis_schedconf.cvmfs.json
[2025-07-28 04:19:38] -rw-------. 1 boinc boinc   1593052 Jul 28 02:49 agis_ddmendpoints.agis.ALL.json
[2025-07-28 04:19:38] drwx------. 4 boinc boinc      4096 Jul 28 02:49 pilot3
[2025-07-28 04:19:38] -rw-------. 1 boinc boinc 159496337 Jul 28 04:18 HITS.45759215._000072.pool.root.1
[2025-07-28 04:19:38] -rw-------. 1 boinc boinc      1027 Jul 28 04:18 memory_monitor_summary.json
[2025-07-28 04:19:38] -rw-r--r--. 1 boinc boinc       529 Jul 28 04:19 boinc_task_state.xml
[2025-07-28 04:19:38] -rw-------. 1 boinc boinc    290333 Jul 28 04:19 log.45759215._000072.job.log.tgz.1
[2025-07-28 04:19:38] -rw-------. 1 boinc boinc      7779 Jul 28 04:19 heartbeat.json
[2025-07-28 04:19:38] -rw-r--r--. 1 boinc boinc      8192 Jul 28 04:19 boinc_mmap_file
[2025-07-28 04:19:38] -rw-r--r--. 1 boinc boinc        27 Jul 28 04:19 wrapper_checkpoint.txt
[2025-07-28 04:19:38] -rw-------. 1 boinc boinc       821 Jul 28 04:19 pilotlog.txt
[2025-07-28 04:19:38] -rw-------. 1 boinc boinc        95 Jul 28 04:19 pilot_heartbeat.json
[2025-07-28 04:19:38] -rw-------. 1 boinc boinc    544105 Jul 28 04:19 log.45759215._000072.job.log.1
[2025-07-28 04:19:38] -rw-------. 1 boinc boinc       357 Jul 28 04:19 output.list
[2025-07-28 04:19:38] -rw-r--r--. 1 boinc boinc       620 Jul 28 04:19 runtime_log
[2025-07-28 04:19:38] -rw-------. 1 boinc boinc    849920 Jul 28 04:19 result.tar.gz
[2025-07-28 04:19:38] -rw-r--r--. 1 boinc boinc      8618 Jul 28 04:19 runtime_log.err
[2025-07-28 04:19:38] -rw-------. 1 boinc boinc       641 Jul 28 04:19 ffEMDmsJ7z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm95TLDmbx3kxn.diag
[2025-07-28 04:19:38] -rw-r--r--. 1 boinc boinc     21322 Jul 28 04:19 stderr.txt
[2025-07-28 04:19:38] HITS file was successfully produced:
[2025-07-28 04:19:38] -rw-------. 1 boinc boinc 159496337 Jul 28 04:18 shared/HITS.pool.root.1
[2025-07-28 04:19:38]  *** Contents of shared directory: ***
[2025-07-28 04:19:38] total 370688
[2025-07-28 04:19:38] -rw-r--r--. 2 boinc boinc     15095 Jul 28 02:49 start_atlas.sh
[2025-07-28 04:19:38] -rw-r--r--. 2 boinc boinc    542886 Jul 28 02:49 input.tar.gz
[2025-07-28 04:19:38] -rw-r--r--. 2 boinc boinc 218671317 Jul 28 02:49 ATLAS.root_0
[2025-07-28 04:19:38] -rw-------. 1 boinc boinc 159496337 Jul 28 04:18 HITS.pool.root.1
[2025-07-28 04:19:38] -rw-------. 1 boinc boinc    849920 Jul 28 04:19 result.tar.gz
04:19:40 (452748): run_atlas exited; CPU time 27615.627513
04:19:40 (452748): called boinc_finish(0)

</stderr_txt>
]]>

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