Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:39:53 (1230768): wrapper (7.7.26015): starting
04:39:53 (1230768): wrapper: running run_atlas (--nthreads 12)
[2025-07-28 04:39:53] Arguments: --nthreads 12
[2025-07-28 04:39:53] Threads: 12
[2025-07-28 04:39:53] Checking for CVMFS
[2025-07-28 04:39:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 04:39:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 04:39:53] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 04:39:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 04:39:53] 2.13.1.0 1072336 8814 82040 148832 3 57 2225776 4097025 0 130560 0 10842985 99.988 322046 7424 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://188.184.28.244:3128 1
[2025-07-28 04:39:53] CVMFS is ok
[2025-07-28 04:39:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 04:39:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 04:39:53] Further information can be found at the LHC@home message board.
[2025-07-28 04:39:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 04:39:53] Checking for apptainer binary...
[2025-07-28 04:39:53] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2025-07-28 04:39:53] apptainer is not installed, using version from CVMFS
[2025-07-28 04:39:53] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 04:39:53] pckelar2.cern.ch
[2025-07-28 04:39:53] apptainer works
[2025-07-28 04:39:53] Set ATHENA_PROC_NUMBER=12
[2025-07-28 04:39:53] Set ATHENA_CORE_NUMBER=12
[2025-07-28 04:39:53] Starting ATLAS job with PandaID=6746209404
[2025-07-28 04:39:53] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 05:31:16]  *** The last 200 lines of the pilot log: ***
[2025-07-28 05:31:16]  guid=ef928052-0ba3-4c59-bb91-96c4b36d457c
[2025-07-28 05:31:16]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-07-28 05:31:16]  is_altstaged=None
[2025-07-28 05:31:16]  is_tar=False
[2025-07-28 05:31:16]  lfn=log.45759518._000001.job.log.tgz.1
[2025-07-28 05:31:16]  mtime=0
[2025-07-28 05:31:16]  protocol_id=None
[2025-07-28 05:31:16]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 05:31:16]  replicas=None
[2025-07-28 05:31:16]  scope=mc23_13p6TeV
[2025-07-28 05:31:16]  status=None
[2025-07-28 05:31:16]  status_code=0
[2025-07-28 05:31:16]  storage_token=
[2025-07-28 05:31:16]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-6746209404/log.45759518._000001.job.log.tgz.1
[2025-07-28 05:31:16]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/25/99/log.45759518._000001.job.log.tgz.1
[2025-07-28 05:31:16]  workdir=None
[2025-07-28 05:31:16] ]
[2025-07-28 05:31:16] 2025-07-28 03:30:37,569 | INFO     | transferring file log.45759518._000001.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6746209404/log.45759518._000001.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-07-28 05:31:16] 2025-07-28 03:30:37,569 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6746209404/log.45759518._000001.job.log.tgz.1 /var/lib/boinc/slots/0/log.45759518._000001.job
[2025-07-28 05:31:16] 2025-07-28 03:30:37,582 | INFO     | adding to output.list: log.45759518._000001.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/25/99/log.45759518._000001.job.log.tg
[2025-07-28 05:31:16] 2025-07-28 03:30:37,583 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 05:31:16] 2025-07-28 03:30:37,583 | INFO     | summary of transferred files:
[2025-07-28 05:31:16] 2025-07-28 03:30:37,583 | INFO     |  -- lfn=log.45759518._000001.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 05:31:16] 2025-07-28 03:30:37,583 | INFO     | stage-out finished correctly
[2025-07-28 05:31:16] 2025-07-28 03:30:37,628 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 05:31:16] 2025-07-28 03:30:38,304 | INFO     | monitor loop #237: job 0:6746209404 is in state 'finished'
[2025-07-28 05:31:16] 2025-07-28 03:30:38,304 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 05:31:16] 2025-07-28 03:30:38,668 | INFO     | job 6746209404 has state=finished
[2025-07-28 05:31:16] 2025-07-28 03:30:38,668 | INFO     | preparing for final server update for job 6746209404 in state='finished'
[2025-07-28 05:31:16] 2025-07-28 03:30:38,668 | INFO     | this job has now completed (state=finished)
[2025-07-28 05:31:16] 2025-07-28 03:30:38,669 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 05:31:16] 2025-07-28 03:30:38,669 | INFO     | log transfer has been attempted: DONE
[2025-07-28 05:31:16] 2025-07-28 03:30:38,669 | INFO     | job 6746209404 has finished - writing final server update
[2025-07-28 05:31:16] 2025-07-28 03:30:38,669 | INFO     | total number of processed events: 400 (read)
[2025-07-28 05:31:16] 2025-07-28 03:30:38,670 | INFO     | executing command: lscpu
[2025-07-28 05:31:16] 2025-07-28 03:30:38,691 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 05:31:16] 2025-07-28 03:30:40,806 | INFO     | monitor loop #238: job 0:6746209404 is in state 'finished'
[2025-07-28 05:31:16] 2025-07-28 03:30:40,806 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 05:31:16] 2025-07-28 03:30:42,851 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-28 05:31:16] 2025-07-28 03:30:42,854 | INFO     | found 20 cores (10 cores per socket, 2 sockets) , CPU MHz: 2685.8512500000006
[2025-07-28 05:31:16] 2025-07-28 03:30:42,856 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6746209404/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 05:31:16] 2025-07-28 03:30:42,857 | INFO     | extracted standard info from prmon json
[2025-07-28 05:31:16] 2025-07-28 03:30:42,857 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 05:31:16] 2025-07-28 03:30:42,857 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 05:31:16] 2025-07-28 03:30:42,857 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 05:31:16] 2025-07-28 03:30:42,857 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 05:31:16] 2025-07-28 03:30:42,858 | INFO     | fitting pss+swap vs Time
[2025-07-28 05:31:16] 2025-07-28 03:30:42,858 | INFO     | sum of square deviations: 24640462.0
[2025-07-28 05:31:16] 2025-07-28 03:30:42,858 | INFO     | sum of deviations: -4591505807.0
[2025-07-28 05:31:16] 2025-07-28 03:30:42,858 | INFO     | mean x: 1753672009.0
[2025-07-28 05:31:16] 2025-07-28 03:30:42,858 | INFO     | mean y: 3046671.023255814
[2025-07-28 05:31:16] 2025-07-28 03:30:42,858 | INFO     | -- intersect: 326782439561.3374
[2025-07-28 05:31:16] 2025-07-28 03:30:42,859 | INFO     | intersect: 326782439561.3374
[2025-07-28 05:31:16] 2025-07-28 03:30:42,859 | INFO     | chi2: 0.06988533109311927
[2025-07-28 05:31:16] 2025-07-28 03:30:42,859 | INFO     | -- intersect: 326782439561.3374
[2025-07-28 05:31:16] 2025-07-28 03:30:42,859 | INFO     | current memory leak: -186.34 B/s (using 43 data points, chi2=0.07)
[2025-07-28 05:31:16] 2025-07-28 03:30:42,859 | INFO     | could have reported an average CPU frequency of 2510 MHz (5 samples)
[2025-07-28 05:31:16] 2025-07-28 03:30:42,859 | INFO     | ..............................
[2025-07-28 05:31:16] 2025-07-28 03:30:42,859 | INFO     | . Timing measurements:
[2025-07-28 05:31:16] 2025-07-28 03:30:42,859 | INFO     | . get job = 0 s
[2025-07-28 05:31:16] 2025-07-28 03:30:42,859 | INFO     | . initial setup = 1 s
[2025-07-28 05:31:16] 2025-07-28 03:30:42,859 | INFO     | . payload setup = 5 s
[2025-07-28 05:31:16] 2025-07-28 03:30:42,859 | INFO     | . stage-in = 0 s
[2025-07-28 05:31:16] 2025-07-28 03:30:42,859 | INFO     | . payload execution = 3013 s
[2025-07-28 05:31:16] 2025-07-28 03:30:42,860 | INFO     | . stage-out = 0 s
[2025-07-28 05:31:16] 2025-07-28 03:30:42,860 | INFO     | . log creation = 0 s
[2025-07-28 05:31:16] 2025-07-28 03:30:42,860 | INFO     | ..............................
[2025-07-28 05:31:16] 2025-07-28 03:30:43,307 | INFO     | 
[2025-07-28 05:31:16] 2025-07-28 03:30:43,307 | INFO     | job summary report
[2025-07-28 05:31:16] 2025-07-28 03:30:43,307 | INFO     | --------------------------------------------------
[2025-07-28 05:31:16] 2025-07-28 03:30:43,307 | INFO     | PanDA job id: 6746209404
[2025-07-28 05:31:16] 2025-07-28 03:30:43,307 | INFO     | task id: 45759518
[2025-07-28 05:31:16] 2025-07-28 03:30:43,307 | INFO     | errors: (none)
[2025-07-28 05:31:16] 2025-07-28 03:30:43,307 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 05:31:16] 2025-07-28 03:30:43,307 | INFO     | pilot state: finished 
[2025-07-28 05:31:16] 2025-07-28 03:30:43,307 | INFO     | transexitcode: 0
[2025-07-28 05:31:16] 2025-07-28 03:30:43,307 | INFO     | exeerrorcode: 0
[2025-07-28 05:31:16] 2025-07-28 03:30:43,307 | INFO     | exeerrordiag: 
[2025-07-28 05:31:16] 2025-07-28 03:30:43,307 | INFO     | exitcode: 0
[2025-07-28 05:31:16] 2025-07-28 03:30:43,307 | INFO     | exitmsg: OK
[2025-07-28 05:31:16] 2025-07-28 03:30:43,307 | INFO     | cpuconsumptiontime: 33231 s
[2025-07-28 05:31:16] 2025-07-28 03:30:43,308 | INFO     | nevents: 400
[2025-07-28 05:31:16] 2025-07-28 03:30:43,308 | INFO     | neventsw: 0
[2025-07-28 05:31:16] 2025-07-28 03:30:43,308 | INFO     | pid: 1241818
[2025-07-28 05:31:16] 2025-07-28 03:30:43,308 | INFO     | pgrp: 1241818
[2025-07-28 05:31:16] 2025-07-28 03:30:43,308 | INFO     | corecount: 12
[2025-07-28 05:31:16] 2025-07-28 03:30:43,308 | INFO     | event service: False
[2025-07-28 05:31:16] 2025-07-28 03:30:43,308 | INFO     | sizes: {0: 2397445, 3: 2397707, 11: 2397735, 3022: 2423177, 3023: 2432231, 3029: 2432401}
[2025-07-28 05:31:16] 2025-07-28 03:30:43,308 | INFO     | --------------------------------------------------
[2025-07-28 05:31:16] 2025-07-28 03:30:43,308 | INFO     | 
[2025-07-28 05:31:16] 2025-07-28 03:30:43,308 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-07-28 05:31:16] 2025-07-28 03:30:43,324 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 05:31:16] 2025-07-28 03:30:43,324 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 05:31:16] 2025-07-28 03:30:43,324 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 05:31:16] 2025-07-28 03:30:43,324 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 05:31:16] 2025-07-28 03:30:43,324 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 05:31:16] 2025-07-28 03:30:43,324 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 05:31:16] 2025-07-28 03:30:43,324 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 05:31:16] 2025-07-28 03:30:43,324 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 05:31:16] 2025-07-28 03:30:43,325 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 05:31:16] 2025-07-28 03:30:43,325 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 05:31:16] 2025-07-28 03:30:43,325 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 05:31:16] 2025-07-28 03:30:43,325 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 05:31:16] 2025-07-28 03:30:43,325 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 05:31:16] 2025-07-28 03:30:43,325 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 05:31:16] 2025-07-28 03:30:43,325 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 05:31:16] 2025-07-28 03:30:43,325 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 05:31:16] 2025-07-28 03:30:43,325 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 05:31:16] 2025-07-28 03:30:43,325 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 05:31:16] 2025-07-28 03:30:43,325 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 05:31:16] 2025-07-28 03:30:43,325 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 05:31:16] 2025-07-28 03:30:43,325 | INFO     | job 6746209404 has completed (purged errors)
[2025-07-28 05:31:16] 2025-07-28 03:30:43,325 | INFO     | overall cleanup function is called
[2025-07-28 05:31:16] 2025-07-28 03:30:44,332 | INFO     | --- collectZombieJob: --- 10, [1241818]
[2025-07-28 05:31:16] 2025-07-28 03:30:44,332 | INFO     | zombie collector waiting for pid 1241818
[2025-07-28 05:31:16] 2025-07-28 03:30:44,332 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 05:31:16] 2025-07-28 03:30:44,333 | INFO     | collected zombie processes
[2025-07-28 05:31:16] 2025-07-28 03:30:44,333 | INFO     | will attempt to kill all subprocesses of pid=1241818
[2025-07-28 05:31:16] 2025-07-28 03:30:44,411 | INFO     | process IDs to be killed: [1241818] (in reverse order)
[2025-07-28 05:31:16] 2025-07-28 03:30:44,442 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 05:31:16] 2025-07-28 03:30:44,442 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 05:31:16] 2025-07-28 03:30:44,444 | INFO     | did not find any defunct processes belonging to 1241818
[2025-07-28 05:31:16] 2025-07-28 03:30:44,446 | INFO     | did not find any defunct processes belonging to 1241818
[2025-07-28 05:31:16] 2025-07-28 03:30:44,446 | INFO     | ready for new job
[2025-07-28 05:31:16] 2025-07-28 03:30:44,446 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 05:31:16] 2025-07-28 03:30:44,447 | INFO     | ***************************************
[2025-07-28 05:31:16] 2025-07-28 03:30:44,447 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 05:31:16] 2025-07-28 03:30:44,447 | INFO     | ***************************************
[2025-07-28 05:31:16] 2025-07-28 03:30:44,447 | INFO     | 
[2025-07-28 05:31:16] 2025-07-28 03:30:44,448 | INFO     | architecture information:
[2025-07-28 05:31:16] 2025-07-28 03:30:44,448 | INFO     | executing command: cat /etc/os-release
[2025-07-28 05:31:16] 2025-07-28 03:30:44,457 | INFO     | cat /etc/os-release:
[2025-07-28 05:31:16] NAME="CentOS Linux"
[2025-07-28 05:31:16] VERSION="7 (Core)"
[2025-07-28 05:31:16] ID="centos"
[2025-07-28 05:31:16] ID_LIKE="rhel fedora"
[2025-07-28 05:31:16] VERSION_ID="7"
[2025-07-28 05:31:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 05:31:16] ANSI_COLOR="0;31"
[2025-07-28 05:31:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 05:31:16] HOME_URL="https://www.centos.org/"
[2025-07-28 05:31:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 05:31:16] 
[2025-07-28 05:31:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 05:31:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 05:31:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 05:31:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 05:31:16] 
[2025-07-28 05:31:16] 2025-07-28 03:30:44,457 | INFO     | ***************************************
[2025-07-28 05:31:16] 2025-07-28 03:30:44,960 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-07-28 05:31:16] 2025-07-28 03:30:44,972 | INFO     | sufficient remaining disk space (232844689408 B)
[2025-07-28 05:31:16] 2025-07-28 03:30:44,972 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 05:31:16] 2025-07-28 03:30:44,972 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 05:31:16] 2025-07-28 03:30:44,972 | INFO     | update_server=False
[2025-07-28 05:31:16] 2025-07-28 03:30:44,972 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 05:31:16] 2025-07-28 03:30:44,973 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 05:31:16] 2025-07-28 03:30:44,973 | INFO     | aborting loop
[2025-07-28 05:31:16] 2025-07-28 03:30:45,115 | INFO     | all job control threads have been joined
[2025-07-28 05:31:16] 2025-07-28 03:30:45,639 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 05:31:16] 2025-07-28 03:30:45,978 | INFO     | [job] retrieve thread has finished
[2025-07-28 05:31:16] 2025-07-28 03:30:45,978 | INFO     | [job] job monitor thread has finished
[2025-07-28 05:31:16] 2025-07-28 03:30:46,052 | INFO     | all data control threads have been joined
[2025-07-28 05:31:16] 2025-07-28 03:30:46,121 | INFO     | [job] control thread has finished
[2025-07-28 05:31:16] 2025-07-28 03:30:46,409 | INFO     | all payload control threads have been joined
[2025-07-28 05:31:16] 2025-07-28 03:30:46,433 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 05:31:16] 2025-07-28 03:30:46,791 | INFO     | [payload] failed_post thread has finished
[2025-07-28 05:31:16] 2025-07-28 03:30:47,052 | INFO     | [data] control thread has finished
[2025-07-28 05:31:16] 2025-07-28 03:30:47,169 | INFO     | [job] validate thread has finished
[2025-07-28 05:31:16] 2025-07-28 03:30:47,290 | INFO     | [payload] validate_post thread has finished
[2025-07-28 05:31:16] 2025-07-28 03:30:47,326 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 05:31:16] 2025-07-28 03:30:47,327 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 05:31:16] 2025-07-28 03:30:47,354 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 05:31:16] 2025-07-28 03:30:47,397 | INFO     | [data] copytool_in thread has finished
[2025-07-28 05:31:16] 2025-07-28 03:30:47,414 | INFO     | [payload] control thread has finished
[2025-07-28 05:31:16] 2025-07-28 03:30:47,644 | INFO     | [data] copytool_out thread has finished
[2025-07-28 05:31:16] 2025-07-28 03:30:47,919 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 05:31:16] 2025-07-28 03:30:48,179 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 05:31:16] 2025-07-28 03:30:48,925 | INFO     | [job] queue monitor thread has finished
[2025-07-28 05:31:16] 2025-07-28 03:30:52,185 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 05:31:16] 2025-07-28 03:30:54,046 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140350103017280)>', '<ExcThread(monitor, started 140349112571648)>']
[2025-07-28 05:31:16] 2025-07-28 03:30:59,071 | INFO     | all workflow threads have been joined
[2025-07-28 05:31:16] 2025-07-28 03:30:59,071 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 05:31:16] 2025-07-28 03:30:59,071 | INFO     | traces error code: 0
[2025-07-28 05:31:16] 2025-07-28 03:30:59,072 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 05:31:16] 2025-07-28 03:31:16,037 | INFO     | PID=1234525 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 05:31:16] 2025-07-28 03:31:16,038 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 05:31:16] 2025-07-28 03:31:16,038 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 05:31:16] 2025-07-28 03:31:16,038 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 05:31:16] 2025-07-28 03:31:16,038 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 05:31:16] 2025-07-28 03:31:16,038 | INFO     | [monitor] control thread has ended
[2025-07-28 05:31:16] 2025-07-28 03:31:16,099 [wrapper] ==== pilot stdout END ====
[2025-07-28 05:31:16] 2025-07-28 03:31:16,101 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 05:31:16] 2025-07-28 03:31:16,104 [wrapper] pilotpid: 1234525
[2025-07-28 05:31:16] 2025-07-28 03:31:16,106 [wrapper] Pilot exit status: 0
[2025-07-28 05:31:16] 2025-07-28 03:31:16,114 [wrapper] pandaids: 6746209404
[2025-07-28 05:31:16] 2025-07-28 03:31:16,134 [wrapper] cleanup supervisor_pilot 1253693 1234526
[2025-07-28 05:31:16] 2025-07-28 03:31:16,136 [wrapper] Test setup, not cleaning
[2025-07-28 05:31:16] 2025-07-28 03:31:16,138 [wrapper] apfmon messages muted
[2025-07-28 05:31:16] 2025-07-28 03:31:16,140 [wrapper] ==== wrapper stdout END ====
[2025-07-28 05:31:16] 2025-07-28 03:31:16,143 [wrapper] ==== wrapper stderr END ====
[2025-07-28 05:31:16]  *** Error codes and diagnostics ***
[2025-07-28 05:31:16]     "exeErrorCode": 0,
[2025-07-28 05:31:16]     "exeErrorDiag": "",
[2025-07-28 05:31:16]     "pilotErrorCode": 0,
[2025-07-28 05:31:16]     "pilotErrorDiag": "",
[2025-07-28 05:31:16]  *** Listing of results directory ***
[2025-07-28 05:31:16] total 411044
[2025-07-28 05:31:16] -rw-r--r-- 1 boinc boinc    530466 Jul 27 07:42 pilot3.tar.gz
[2025-07-28 05:31:16] -rw-r--r-- 1 boinc boinc      5112 Jul 27 07:59 queuedata.json
[2025-07-28 05:31:16] -rwx------ 1 boinc boinc     36292 Jul 27 07:59 runpilot2-wrapper.sh
[2025-07-28 05:31:16] -rw-r--r-- 1 boinc boinc       100 Jul 28 04:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 05:31:16] -rwxr-xr-x 1 boinc boinc      7986 Jul 28 04:39 run_atlas
[2025-07-28 05:31:16] -rw-r--r-- 1 boinc boinc       105 Jul 28 04:39 job.xml
[2025-07-28 05:31:16] -rw-r--r-- 2 boinc boinc     15095 Jul 28 04:39 start_atlas.sh
[2025-07-28 05:31:16] drwxrwx--x 2 boinc boinc        68 Jul 28 04:39 shared
[2025-07-28 05:31:16] -rw-r--r-- 2 boinc boinc    542865 Jul 28 04:39 input.tar.gz
[2025-07-28 05:31:16] -rw-r--r-- 1 boinc boinc      6471 Jul 28 04:39 init_data.xml
[2025-07-28 05:31:16] -rw-r--r-- 2 boinc boinc 241685567 Jul 28 04:39 EVNT.45759511._000001.pool.root.1
[2025-07-28 05:31:16] -rw-r--r-- 1 boinc boinc         0 Jul 28 04:39 boinc_lockfile
[2025-07-28 05:31:16] -rw-r--r-- 1 boinc boinc      2547 Jul 28 04:39 pandaJob.out
[2025-07-28 05:31:16] -rw------- 1 boinc boinc    980125 Jul 28 04:39 agis_schedconf.cvmfs.json
[2025-07-28 05:31:16] -rw------- 1 boinc boinc   1593052 Jul 28 04:39 agis_ddmendpoints.agis.ALL.json
[2025-07-28 05:31:16] drwx------ 4 boinc boinc      4096 Jul 28 04:40 pilot3
[2025-07-28 05:31:16] -rw-r--r-- 1 boinc boinc       529 Jul 28 05:30 boinc_task_state.xml
[2025-07-28 05:31:16] -rw------- 1 boinc boinc 174066726 Jul 28 05:30 HITS.45759518._000001.pool.root.1
[2025-07-28 05:31:16] -rw------- 1 boinc boinc        95 Jul 28 05:30 pilot_heartbeat.json
[2025-07-28 05:31:16] -rw------- 1 boinc boinc      1015 Jul 28 05:30 memory_monitor_summary.json
[2025-07-28 05:31:16] -rw------- 1 boinc boinc    332359 Jul 28 05:30 log.45759518._000001.job.log.tgz.1
[2025-07-28 05:31:16] -rw------- 1 boinc boinc      7778 Jul 28 05:30 heartbeat.json
[2025-07-28 05:31:16] -rw-r--r-- 1 boinc boinc      8192 Jul 28 05:31 boinc_mmap_file
[2025-07-28 05:31:16] -rw-r--r-- 1 boinc boinc        27 Jul 28 05:31 wrapper_checkpoint.txt
[2025-07-28 05:31:16] -rw------- 1 boinc boinc       747 Jul 28 05:31 pilotlog.txt
[2025-07-28 05:31:16] -rw------- 1 boinc boinc    314452 Jul 28 05:31 log.45759518._000001.job.log.1
[2025-07-28 05:31:16] -rw------- 1 boinc boinc       357 Jul 28 05:31 output.list
[2025-07-28 05:31:16] -rw-r--r-- 1 boinc boinc       620 Jul 28 05:31 runtime_log
[2025-07-28 05:31:16] -rw------- 1 boinc boinc    665600 Jul 28 05:31 result.tar.gz
[2025-07-28 05:31:16] -rw------- 1 boinc boinc       653 Jul 28 05:31 zzwNDm7a9z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0RULDmhBEyWo.diag
[2025-07-28 05:31:16] -rw-r--r-- 1 boinc boinc      8684 Jul 28 05:31 runtime_log.err
[2025-07-28 05:31:16] -rw-r--r-- 1 boinc boinc     21500 Jul 28 05:31 stderr.txt
[2025-07-28 05:31:16] HITS file was successfully produced:
[2025-07-28 05:31:16] -rw------- 1 boinc boinc 174066726 Jul 28 05:30 shared/HITS.pool.root.1
[2025-07-28 05:31:16]  *** Contents of shared directory: ***
[2025-07-28 05:31:16] total 407212
[2025-07-28 05:31:16] -rw-r--r-- 2 boinc boinc     15095 Jul 28 04:39 start_atlas.sh
[2025-07-28 05:31:16] -rw-r--r-- 2 boinc boinc    542865 Jul 28 04:39 input.tar.gz
[2025-07-28 05:31:16] -rw-r--r-- 2 boinc boinc 241685567 Jul 28 04:39 ATLAS.root_0
[2025-07-28 05:31:16] -rw------- 1 boinc boinc 174066726 Jul 28 05:30 HITS.pool.root.1
[2025-07-28 05:31:16] -rw------- 1 boinc boinc    665600 Jul 28 05:31 result.tar.gz
05:31:17 (1230768): run_atlas exited; CPU time 33243.351332
05:31:17 (1230768): called boinc_finish(0)

</stderr_txt>
]]>

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