Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:28:28 (30552): wrapper (7.7.26015): starting
07:28:28 (30552): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 07:28:28] Arguments: --nthreads 12
[2025-07-27 07:28:28] Threads: 12
[2025-07-27 07:28:28] Checking for CVMFS
[2025-07-27 07:28:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 07:28:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 07:28:28] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 07:28:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 07:28:28] 2.11.2.0 2913 111942 96312 148811 1 57 15396422 20275201 1 130560 0 38714988 99.971 9811081 10818 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 07:28:28] CVMFS is ok
[2025-07-27 07:28:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 07:28:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 07:28:28] Further information can be found at the LHC@home message board.
[2025-07-27 07:28:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 07:28:28] Checking for apptainer binary...
[2025-07-27 07:28:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 07:28:28] Running /usr/bin/apptainer --version
[2025-07-27 07:28:28] apptainer version 1.3.2-1.el7
[2025-07-27 07:28:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 07:28:30] c-205-6.aglt2.org
[2025-07-27 07:28:30] apptainer works
[2025-07-27 07:28:30] Set ATHENA_PROC_NUMBER=12
[2025-07-27 07:28:30] Set ATHENA_CORE_NUMBER=12
[2025-07-27 07:28:30] Starting ATLAS job with PandaID=6745982410
[2025-07-27 07:28:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 09:01:42]  *** The last 200 lines of the pilot log: ***
[2025-07-27 09:01:42]  is_tar=False
[2025-07-27 09:01:42]  lfn=log.45758367._000008.job.log.tgz.1
[2025-07-27 09:01:42]  mtime=0
[2025-07-27 09:01:42]  protocol_id=None
[2025-07-27 09:01:42]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 09:01:42]  replicas=None
[2025-07-27 09:01:42]  scope=mc23_13p6TeV
[2025-07-27 09:01:42]  status=None
[2025-07-27 09:01:42]  status_code=0
[2025-07-27 09:01:42]  storage_token=
[2025-07-27 09:01:42]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745982410/log.45758367._000008.job.log.tgz.1
[2025-07-27 09:01:42]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f1/b4/log.45758367._000008.job.log.tgz.1
[2025-07-27 09:01:42]  workdir=None
[2025-07-27 09:01:42] ]
[2025-07-27 09:01:42] 2025-07-27 13:01:00,860 | INFO     | transferring file log.45758367._000008.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745982410/log.45758367._000008.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 09:01:42] 2025-07-27 13:01:00,860 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745982410/log.45758367._000008.job.log.tgz.1 /tmp/boinchome/slots/0/log.45758367._000008.job
[2025-07-27 09:01:42] 2025-07-27 13:01:00,960 | INFO     | adding to output.list: log.45758367._000008.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f1/b4/log.45758367._000008.job.log.tg
[2025-07-27 09:01:42] 2025-07-27 13:01:00,961 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 09:01:42] 2025-07-27 13:01:00,961 | INFO     | summary of transferred files:
[2025-07-27 09:01:42] 2025-07-27 13:01:00,961 | INFO     |  -- lfn=log.45758367._000008.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 09:01:42] 2025-07-27 13:01:00,961 | INFO     | stage-out finished correctly
[2025-07-27 09:01:42] 2025-07-27 13:01:02,713 | INFO     | monitor loop #415: job 0:6745982410 is in state 'finished'
[2025-07-27 09:01:42] 2025-07-27 13:01:02,714 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 09:01:42] 2025-07-27 13:01:04,052 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 09:01:42] 2025-07-27 13:01:05,021 | INFO     | job 6745982410 has state=finished
[2025-07-27 09:01:42] 2025-07-27 13:01:05,021 | INFO     | preparing for final server update for job 6745982410 in state='finished'
[2025-07-27 09:01:42] 2025-07-27 13:01:05,022 | INFO     | this job has now completed (state=finished)
[2025-07-27 09:01:42] 2025-07-27 13:01:05,022 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 09:01:42] 2025-07-27 13:01:05,022 | INFO     | log transfer has been attempted: DONE
[2025-07-27 09:01:42] 2025-07-27 13:01:05,022 | INFO     | job 6745982410 has finished - writing final server update
[2025-07-27 09:01:42] 2025-07-27 13:01:05,023 | INFO     | total number of processed events: 400 (read)
[2025-07-27 09:01:42] 2025-07-27 13:01:05,023 | INFO     | executing command: lscpu
[2025-07-27 09:01:42] 2025-07-27 13:01:05,049 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 09:01:42] 2025-07-27 13:01:05,217 | INFO     | monitor loop #416: job 0:6745982410 is in state 'finished'
[2025-07-27 09:01:42] 2025-07-27 13:01:05,217 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 09:01:42] 2025-07-27 13:01:07,720 | INFO     | monitor loop #417: job 0:6745982410 is in state 'finished'
[2025-07-27 09:01:42] 2025-07-27 13:01:07,720 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 09:01:42] 2025-07-27 13:01:09,601 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-27 09:01:42] 2025-07-27 13:01:09,605 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-07-27 09:01:42] 2025-07-27 13:01:09,607 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745982410/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 09:01:42] 2025-07-27 13:01:09,609 | INFO     | extracted standard info from prmon json
[2025-07-27 09:01:42] 2025-07-27 13:01:09,609 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 09:01:42] 2025-07-27 13:01:09,609 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 09:01:42] 2025-07-27 13:01:09,609 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 09:01:42] 2025-07-27 13:01:09,609 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 09:01:42] 2025-07-27 13:01:09,611 | INFO     | fitting pss+swap vs Time
[2025-07-27 09:01:42] 2025-07-27 13:01:09,611 | INFO     | sum of square deviations: 183761585.0
[2025-07-27 09:01:42] 2025-07-27 13:01:09,612 | INFO     | sum of deviations: -10974158152.0
[2025-07-27 09:01:42] 2025-07-27 13:01:09,612 | INFO     | mean x: 1753618590.5
[2025-07-27 09:01:42] 2025-07-27 13:01:09,612 | INFO     | mean y: 2812272.8095238097
[2025-07-27 09:01:42] 2025-07-27 13:01:09,612 | INFO     | -- intersect: 104728115716.586
[2025-07-27 09:01:42] 2025-07-27 13:01:09,612 | INFO     | intersect: 104728115716.586
[2025-07-27 09:01:42] 2025-07-27 13:01:09,612 | INFO     | chi2: 0.13811214527897522
[2025-07-27 09:01:42] 2025-07-27 13:01:09,612 | INFO     | -- intersect: 104728115716.586
[2025-07-27 09:01:42] 2025-07-27 13:01:09,613 | INFO     | current memory leak: -59.72 B/s (using 84 data points, chi2=0.14)
[2025-07-27 09:01:42] 2025-07-27 13:01:09,613 | INFO     | could have reported an average CPU frequency of 2041 MHz (7 samples)
[2025-07-27 09:01:42] 2025-07-27 13:01:09,613 | INFO     | ..............................
[2025-07-27 09:01:42] 2025-07-27 13:01:09,613 | INFO     | . Timing measurements:
[2025-07-27 09:01:42] 2025-07-27 13:01:09,613 | INFO     | . get job = 0 s
[2025-07-27 09:01:42] 2025-07-27 13:01:09,613 | INFO     | . initial setup = 2 s
[2025-07-27 09:01:42] 2025-07-27 13:01:09,613 | INFO     | . payload setup = 9 s
[2025-07-27 09:01:42] 2025-07-27 13:01:09,614 | INFO     | . stage-in = 0 s
[2025-07-27 09:01:42] 2025-07-27 13:01:09,614 | INFO     | . payload execution = 5508 s
[2025-07-27 09:01:42] 2025-07-27 13:01:09,614 | INFO     | . stage-out = 0 s
[2025-07-27 09:01:42] 2025-07-27 13:01:09,614 | INFO     | . log creation = 0 s
[2025-07-27 09:01:42] 2025-07-27 13:01:09,614 | INFO     | ..............................
[2025-07-27 09:01:42] 2025-07-27 13:01:10,137 | INFO     | 
[2025-07-27 09:01:42] 2025-07-27 13:01:10,137 | INFO     | job summary report
[2025-07-27 09:01:42] 2025-07-27 13:01:10,138 | INFO     | --------------------------------------------------
[2025-07-27 09:01:42] 2025-07-27 13:01:10,138 | INFO     | PanDA job id: 6745982410
[2025-07-27 09:01:42] 2025-07-27 13:01:10,138 | INFO     | task id: 45758367
[2025-07-27 09:01:42] 2025-07-27 13:01:10,138 | INFO     | errors: (none)
[2025-07-27 09:01:42] 2025-07-27 13:01:10,138 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 09:01:42] 2025-07-27 13:01:10,138 | INFO     | pilot state: finished 
[2025-07-27 09:01:42] 2025-07-27 13:01:10,139 | INFO     | transexitcode: 0
[2025-07-27 09:01:42] 2025-07-27 13:01:10,139 | INFO     | exeerrorcode: 0
[2025-07-27 09:01:42] 2025-07-27 13:01:10,139 | INFO     | exeerrordiag: 
[2025-07-27 09:01:42] 2025-07-27 13:01:10,139 | INFO     | exitcode: 0
[2025-07-27 09:01:42] 2025-07-27 13:01:10,139 | INFO     | exitmsg: OK
[2025-07-27 09:01:42] 2025-07-27 13:01:10,139 | INFO     | cpuconsumptiontime: 60178 s
[2025-07-27 09:01:42] 2025-07-27 13:01:10,139 | INFO     | nevents: 400
[2025-07-27 09:01:42] 2025-07-27 13:01:10,139 | INFO     | neventsw: 0
[2025-07-27 09:01:42] 2025-07-27 13:01:10,139 | INFO     | pid: 9244
[2025-07-27 09:01:42] 2025-07-27 13:01:10,140 | INFO     | pgrp: 9244
[2025-07-27 09:01:42] 2025-07-27 13:01:10,140 | INFO     | corecount: 12
[2025-07-27 09:01:42] 2025-07-27 13:01:10,140 | INFO     | event service: False
[2025-07-27 09:01:42] 2025-07-27 13:01:10,140 | INFO     | sizes: {0: 2397470, 5: 2397732, 11: 2397788, 5520: 2424338, 5521: 2433336, 5524: 2433392, 5530: 2433714}
[2025-07-27 09:01:42] 2025-07-27 13:01:10,140 | INFO     | --------------------------------------------------
[2025-07-27 09:01:42] 2025-07-27 13:01:10,140 | INFO     | 
[2025-07-27 09:01:42] 2025-07-27 13:01:10,140 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 09:01:42] 2025-07-27 13:01:10,164 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 09:01:42] 2025-07-27 13:01:10,164 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 09:01:42] 2025-07-27 13:01:10,165 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 09:01:42] 2025-07-27 13:01:10,165 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 09:01:42] 2025-07-27 13:01:10,165 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 09:01:42] 2025-07-27 13:01:10,165 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 09:01:42] 2025-07-27 13:01:10,165 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 09:01:42] 2025-07-27 13:01:10,165 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 09:01:42] 2025-07-27 13:01:10,165 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 09:01:42] 2025-07-27 13:01:10,166 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 09:01:42] 2025-07-27 13:01:10,166 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 09:01:42] 2025-07-27 13:01:10,166 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 09:01:42] 2025-07-27 13:01:10,166 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 09:01:42] 2025-07-27 13:01:10,166 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 09:01:42] 2025-07-27 13:01:10,166 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 09:01:42] 2025-07-27 13:01:10,167 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 09:01:42] 2025-07-27 13:01:10,167 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 09:01:42] 2025-07-27 13:01:10,167 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 09:01:42] 2025-07-27 13:01:10,167 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 09:01:42] 2025-07-27 13:01:10,167 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 09:01:42] 2025-07-27 13:01:10,167 | INFO     | job 6745982410 has completed (purged errors)
[2025-07-27 09:01:42] 2025-07-27 13:01:10,168 | INFO     | overall cleanup function is called
[2025-07-27 09:01:42] 2025-07-27 13:01:11,175 | INFO     | --- collectZombieJob: --- 10, [9244]
[2025-07-27 09:01:42] 2025-07-27 13:01:11,176 | INFO     | zombie collector waiting for pid 9244
[2025-07-27 09:01:42] 2025-07-27 13:01:11,176 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 09:01:42] 2025-07-27 13:01:11,176 | INFO     | collected zombie processes
[2025-07-27 09:01:42] 2025-07-27 13:01:11,176 | INFO     | will attempt to kill all subprocesses of pid=9244
[2025-07-27 09:01:42] 2025-07-27 13:01:11,272 | INFO     | process IDs to be killed: [9244] (in reverse order)
[2025-07-27 09:01:42] 2025-07-27 13:01:11,323 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 09:01:42] 2025-07-27 13:01:11,323 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 09:01:42] 2025-07-27 13:01:11,327 | INFO     | did not find any defunct processes belonging to 9244
[2025-07-27 09:01:42] 2025-07-27 13:01:11,330 | INFO     | did not find any defunct processes belonging to 9244
[2025-07-27 09:01:42] 2025-07-27 13:01:11,330 | INFO     | ready for new job
[2025-07-27 09:01:42] 2025-07-27 13:01:11,330 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 09:01:42] 2025-07-27 13:01:11,331 | INFO     | ***************************************
[2025-07-27 09:01:42] 2025-07-27 13:01:11,331 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 09:01:42] 2025-07-27 13:01:11,331 | INFO     | ***************************************
[2025-07-27 09:01:42] 2025-07-27 13:01:11,331 | INFO     | 
[2025-07-27 09:01:42] 2025-07-27 13:01:11,332 | INFO     | architecture information:
[2025-07-27 09:01:42] 2025-07-27 13:01:11,332 | INFO     | executing command: cat /etc/os-release
[2025-07-27 09:01:42] 2025-07-27 13:01:11,347 | INFO     | cat /etc/os-release:
[2025-07-27 09:01:42] NAME="CentOS Linux"
[2025-07-27 09:01:42] VERSION="7 (Core)"
[2025-07-27 09:01:42] ID="centos"
[2025-07-27 09:01:42] ID_LIKE="rhel fedora"
[2025-07-27 09:01:42] VERSION_ID="7"
[2025-07-27 09:01:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 09:01:42] ANSI_COLOR="0;31"
[2025-07-27 09:01:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 09:01:42] HOME_URL="https://www.centos.org/"
[2025-07-27 09:01:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 09:01:42] 
[2025-07-27 09:01:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 09:01:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 09:01:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 09:01:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 09:01:42] 
[2025-07-27 09:01:42] 2025-07-27 13:01:11,347 | INFO     | ***************************************
[2025-07-27 09:01:42] 2025-07-27 13:01:11,850 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 09:01:42] 2025-07-27 13:01:11,866 | INFO     | sufficient remaining disk space (29354885120 B)
[2025-07-27 09:01:42] 2025-07-27 13:01:11,866 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 09:01:42] 2025-07-27 13:01:11,866 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 09:01:42] 2025-07-27 13:01:11,866 | INFO     | update_server=False
[2025-07-27 09:01:42] 2025-07-27 13:01:11,867 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 09:01:42] 2025-07-27 13:01:11,867 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 09:01:42] 2025-07-27 13:01:11,867 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 09:01:42] 2025-07-27 13:01:11,867 | INFO     | aborting loop
[2025-07-27 09:01:42] 2025-07-27 13:01:11,895 | INFO     | all payload control threads have been joined
[2025-07-27 09:01:42] 2025-07-27 13:01:12,043 | INFO     | all data control threads have been joined
[2025-07-27 09:01:42] 2025-07-27 13:01:12,661 | INFO     | all job control threads have been joined
[2025-07-27 09:01:42] 2025-07-27 13:01:12,872 | INFO     | [job] retrieve thread has finished
[2025-07-27 09:01:42] 2025-07-27 13:01:12,873 | INFO     | [job] job monitor thread has finished
[2025-07-27 09:01:42] 2025-07-27 13:01:12,900 | INFO     | [payload] control thread has finished
[2025-07-27 09:01:42] 2025-07-27 13:01:13,045 | INFO     | [data] control thread has finished
[2025-07-27 09:01:42] 2025-07-27 13:01:13,073 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 09:01:42] 2025-07-27 13:01:13,139 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 09:01:42] 2025-07-27 13:01:13,164 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 09:01:42] 2025-07-27 13:01:13,577 | INFO     | [data] copytool_in thread has finished
[2025-07-27 09:01:42] 2025-07-27 13:01:13,667 | INFO     | [job] control thread has finished
[2025-07-27 09:01:42] 2025-07-27 13:01:13,872 | INFO     | [data] copytool_out thread has finished
[2025-07-27 09:01:42] 2025-07-27 13:01:13,968 | INFO     | [payload] validate_post thread has finished
[2025-07-27 09:01:42] 2025-07-27 13:01:13,974 | INFO     | [payload] failed_post thread has finished
[2025-07-27 09:01:42] 2025-07-27 13:01:14,200 | INFO     | [job] validate thread has finished
[2025-07-27 09:01:42] 2025-07-27 13:01:14,648 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 09:01:42] 2025-07-27 13:01:14,704 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 09:01:42] 2025-07-27 13:01:15,709 | INFO     | [job] queue monitor thread has finished
[2025-07-27 09:01:42] 2025-07-27 13:01:18,654 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 09:01:42] 2025-07-27 13:01:22,635 | INFO     | job.realtimelogging is not enabled
[2025-07-27 09:01:42] 2025-07-27 13:01:23,641 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 09:01:42] 2025-07-27 13:01:25,319 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140019874084672)>', '<ExcThread(monitor, started 140019213788928)>']
[2025-07-27 09:01:42] 2025-07-27 13:01:30,331 | INFO     | all workflow threads have been joined
[2025-07-27 09:01:42] 2025-07-27 13:01:30,338 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 09:01:42] 2025-07-27 13:01:30,338 | INFO     | traces error code: 0
[2025-07-27 09:01:42] 2025-07-27 13:01:30,338 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 09:01:42] 2025-07-27 13:01:41,773 | INFO     | PID=1756 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-07-27 09:01:42] 2025-07-27 13:01:41,774 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 09:01:42] 2025-07-27 13:01:41,774 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 09:01:42] 2025-07-27 13:01:41,774 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 09:01:42] 2025-07-27 13:01:41,774 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 09:01:42] 2025-07-27 13:01:41,774 | INFO     | [monitor] control thread has ended
[2025-07-27 09:01:42] 2025-07-27 13:01:41,879 [wrapper] ==== pilot stdout END ====
[2025-07-27 09:01:42] 2025-07-27 13:01:41,882 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 09:01:42] 2025-07-27 13:01:41,885 [wrapper] pilotpid: 1756
[2025-07-27 09:01:42] 2025-07-27 13:01:41,889 [wrapper] Pilot exit status: 0
[2025-07-27 09:01:42] 2025-07-27 13:01:41,904 [wrapper] pandaids: 6745982410
[2025-07-27 09:01:42] 2025-07-27 13:01:41,942 [wrapper] cleanup supervisor_pilot  7140 1757
[2025-07-27 09:01:42] 2025-07-27 13:01:41,946 [wrapper] Test setup, not cleaning
[2025-07-27 09:01:42] 2025-07-27 13:01:41,949 [wrapper] apfmon messages muted
[2025-07-27 09:01:42] 2025-07-27 13:01:41,953 [wrapper] ==== wrapper stdout END ====
[2025-07-27 09:01:42] 2025-07-27 13:01:41,956 [wrapper] ==== wrapper stderr END ====
[2025-07-27 09:01:42]  *** Error codes and diagnostics ***
[2025-07-27 09:01:42]     "exeErrorCode": 0,
[2025-07-27 09:01:42]     "exeErrorDiag": "",
[2025-07-27 09:01:42]     "pilotErrorCode": 0,
[2025-07-27 09:01:42]     "pilotErrorDiag": "",
[2025-07-27 09:01:42]  *** Listing of results directory ***
[2025-07-27 09:01:42] total 414128
[2025-07-27 09:01:42] -rw-r--r-- 1 boincer umatlas    530466 Jul 26 23:36 pilot3.tar.gz
[2025-07-27 09:01:42] -rw-r--r-- 1 boincer umatlas      5112 Jul 26 23:39 queuedata.json
[2025-07-27 09:01:42] -rwx------ 1 boincer umatlas     36292 Jul 26 23:39 runpilot2-wrapper.sh
[2025-07-27 09:01:42] -rw-r--r-- 1 boincer umatlas       100 Jul 27 07:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 09:01:42] -rwxr-xr-x 1 boincer umatlas      7986 Jul 27 07:28 run_atlas
[2025-07-27 09:01:42] -rw-r--r-- 1 boincer umatlas       105 Jul 27 07:28 job.xml
[2025-07-27 09:01:42] -rw-r--r-- 2 boincer umatlas 244113064 Jul 27 07:28 EVNT.45758364._000001.pool.root.1
[2025-07-27 09:01:42] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 07:28 start_atlas.sh
[2025-07-27 09:01:42] drwxrwx--x 2 boincer umatlas      4096 Jul 27 07:28 shared
[2025-07-27 09:01:42] -rw-r--r-- 2 boincer umatlas    542884 Jul 27 07:28 input.tar.gz
[2025-07-27 09:01:42] -rw-r--r-- 1 boincer umatlas         0 Jul 27 07:28 boinc_lockfile
[2025-07-27 09:01:42] -rw-r--r-- 1 boincer umatlas      2566 Jul 27 07:28 pandaJob.out
[2025-07-27 09:01:42] -rw------- 1 boincer umatlas    980109 Jul 27 07:28 agis_schedconf.cvmfs.json
[2025-07-27 09:01:42] -rw------- 1 boincer umatlas   1593052 Jul 27 07:28 agis_ddmendpoints.agis.ALL.json
[2025-07-27 09:01:42] drwx------ 4 boincer umatlas      4096 Jul 27 07:28 pilot3
[2025-07-27 09:01:42] -rw-r--r-- 1 boincer umatlas      5867 Jul 27 08:56 init_data.xml
[2025-07-27 09:01:42] -rw-r--r-- 1 boincer umatlas       529 Jul 27 09:00 boinc_task_state.xml
[2025-07-27 09:01:42] -rw------- 1 boincer umatlas 174298407 Jul 27 09:00 HITS.45758367._000008.pool.root.1
[2025-07-27 09:01:42] -rw------- 1 boincer umatlas        95 Jul 27 09:00 pilot_heartbeat.json
[2025-07-27 09:01:42] -rw------- 1 boincer umatlas      1049 Jul 27 09:00 memory_monitor_summary.json
[2025-07-27 09:01:42] -rw------- 1 boincer umatlas    367361 Jul 27 09:01 log.45758367._000008.job.log.tgz.1
[2025-07-27 09:01:42] -rw------- 1 boincer umatlas      7834 Jul 27 09:01 heartbeat.json
[2025-07-27 09:01:42] -rw-r--r-- 1 boincer umatlas      8192 Jul 27 09:01 boinc_mmap_file
[2025-07-27 09:01:42] -rw-r--r-- 1 boincer umatlas        27 Jul 27 09:01 wrapper_checkpoint.txt
[2025-07-27 09:01:42] -rw------- 1 boincer umatlas       744 Jul 27 09:01 pilotlog.txt
[2025-07-27 09:01:42] -rw------- 1 boincer umatlas    522623 Jul 27 09:01 log.45758367._000008.job.log.1
[2025-07-27 09:01:42] -rw------- 1 boincer umatlas       357 Jul 27 09:01 output.list
[2025-07-27 09:01:42] -rw-r--r-- 1 boincer umatlas       620 Jul 27 09:01 runtime_log
[2025-07-27 09:01:42] -rw------- 1 boincer umatlas    911360 Jul 27 09:01 result.tar.gz
[2025-07-27 09:01:42] -rw-r--r-- 1 boincer umatlas      8657 Jul 27 09:01 runtime_log.err
[2025-07-27 09:01:42] -rw------- 1 boincer umatlas       658 Jul 27 09:01 kUbLDmoP7z7n9Rq4apOajLDm4fhM0noT9bVof3QYDmIs1KDm14Cmsm.diag
[2025-07-27 09:01:42] -rw-r--r-- 1 boincer umatlas     21535 Jul 27 09:01 stderr.txt
[2025-07-27 09:01:42] HITS file was successfully produced:
[2025-07-27 09:01:42] -rw------- 1 boincer umatlas 174298407 Jul 27 09:00 shared/HITS.pool.root.1
[2025-07-27 09:01:42]  *** Contents of shared directory: ***
[2025-07-27 09:01:42] total 410052
[2025-07-27 09:01:42] -rw-r--r-- 2 boincer umatlas 244113064 Jul 27 07:28 ATLAS.root_0
[2025-07-27 09:01:42] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 07:28 start_atlas.sh
[2025-07-27 09:01:42] -rw-r--r-- 2 boincer umatlas    542884 Jul 27 07:28 input.tar.gz
[2025-07-27 09:01:42] -rw------- 1 boincer umatlas 174298407 Jul 27 09:00 HITS.pool.root.1
[2025-07-27 09:01:42] -rw------- 1 boincer umatlas    911360 Jul 27 09:01 result.tar.gz
09:01:43 (30552): run_atlas exited; CPU time 60145.912152
09:01:43 (30552): called boinc_finish(0)

</stderr_txt>
]]>

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