Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:14:48 (3250008): wrapper (7.7.26015): starting
19:14:48 (3250008): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 19:14:48] Arguments: --nthreads 12
[2025-07-27 19:14:48] Threads: 12
[2025-07-27 19:14:48] Checking for CVMFS
[2025-07-27 19:14:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 19:14:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 19:14:48] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 19:14:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 19:14:48] 2.13.1.0 95439 8961 104984 148819 3 9 2644115 4097024 0 130560 0 7434170 99.990 336851 6356 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://188.184.28.244:3128 1
[2025-07-27 19:14:48] CVMFS is ok
[2025-07-27 19:14:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 19:14:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 19:14:48] Further information can be found at the LHC@home message board.
[2025-07-27 19:14:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 19:14:48] Checking for apptainer binary...
[2025-07-27 19:14:48] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2025-07-27 19:14:48] apptainer is not installed, using version from CVMFS
[2025-07-27 19:14:48] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 19:14:48] pckelar5.cern.ch
[2025-07-27 19:14:48] apptainer works
[2025-07-27 19:14:48] Set ATHENA_PROC_NUMBER=12
[2025-07-27 19:14:48] Set ATHENA_CORE_NUMBER=12
[2025-07-27 19:14:48] Starting ATLAS job with PandaID=6746137305
[2025-07-27 19:14:48] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 20:42:35]  *** The last 200 lines of the pilot log: ***
[2025-07-27 20:42:35]  is_tar=False
[2025-07-27 20:42:35]  lfn=log.45758383._000123.job.log.tgz.1
[2025-07-27 20:42:35]  mtime=0
[2025-07-27 20:42:35]  protocol_id=None
[2025-07-27 20:42:35]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 20:42:35]  replicas=None
[2025-07-27 20:42:35]  scope=mc23_13p6TeV
[2025-07-27 20:42:35]  status=None
[2025-07-27 20:42:35]  status_code=0
[2025-07-27 20:42:35]  storage_token=
[2025-07-27 20:42:35]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-6746137305/log.45758383._000123.job.log.tgz.1
[2025-07-27 20:42:35]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/33/ce/log.45758383._000123.job.log.tgz.1
[2025-07-27 20:42:35]  workdir=None
[2025-07-27 20:42:35] ]
[2025-07-27 20:42:35] 2025-07-27 18:41:57,215 | INFO     | transferring file log.45758383._000123.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6746137305/log.45758383._000123.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-07-27 20:42:35] 2025-07-27 18:41:57,215 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6746137305/log.45758383._000123.job.log.tgz.1 /var/lib/boinc/slots/0/log.45758383._000123.job
[2025-07-27 20:42:35] 2025-07-27 18:41:57,229 | INFO     | adding to output.list: log.45758383._000123.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/33/ce/log.45758383._000123.job.log.tg
[2025-07-27 20:42:35] 2025-07-27 18:41:57,230 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 20:42:35] 2025-07-27 18:41:57,230 | INFO     | summary of transferred files:
[2025-07-27 20:42:35] 2025-07-27 18:41:57,230 | INFO     |  -- lfn=log.45758383._000123.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 20:42:35] 2025-07-27 18:41:57,230 | INFO     | stage-out finished correctly
[2025-07-27 20:42:35] 2025-07-27 18:41:57,934 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 20:42:35] 2025-07-27 18:41:58,348 | INFO     | monitor loop #391: job 0:6746137305 is in state 'finished'
[2025-07-27 20:42:35] 2025-07-27 18:41:58,348 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 20:42:35] 2025-07-27 18:41:58,831 | INFO     | job 6746137305 has state=finished
[2025-07-27 20:42:35] 2025-07-27 18:41:58,831 | INFO     | preparing for final server update for job 6746137305 in state='finished'
[2025-07-27 20:42:35] 2025-07-27 18:41:58,831 | INFO     | this job has now completed (state=finished)
[2025-07-27 20:42:35] 2025-07-27 18:41:58,831 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 20:42:35] 2025-07-27 18:41:58,831 | INFO     | log transfer has been attempted: DONE
[2025-07-27 20:42:35] 2025-07-27 18:41:58,832 | INFO     | job 6746137305 has finished - writing final server update
[2025-07-27 20:42:35] 2025-07-27 18:41:58,832 | INFO     | total number of processed events: 400 (read)
[2025-07-27 20:42:35] 2025-07-27 18:41:58,833 | INFO     | executing command: lscpu
[2025-07-27 20:42:35] 2025-07-27 18:41:58,853 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 20:42:35] 2025-07-27 18:42:00,851 | INFO     | monitor loop #392: job 0:6746137305 is in state 'finished'
[2025-07-27 20:42:35] 2025-07-27 18:42:00,851 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 20:42:35] 2025-07-27 18:42:01,845 | INFO     | 5227s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-07-27 20:42:35] 2025-07-27 18:42:03,002 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-27 20:42:35] 2025-07-27 18:42:03,004 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 2512.74475
[2025-07-27 20:42:35] 2025-07-27 18:42:03,006 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6746137305/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 20:42:35] 2025-07-27 18:42:03,006 | INFO     | extracted standard info from prmon json
[2025-07-27 20:42:35] 2025-07-27 18:42:03,006 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 20:42:35] 2025-07-27 18:42:03,007 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 20:42:35] 2025-07-27 18:42:03,007 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 20:42:35] 2025-07-27 18:42:03,007 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 20:42:35] 2025-07-27 18:42:03,008 | INFO     | fitting pss+swap vs Time
[2025-07-27 20:42:35] 2025-07-27 18:42:03,009 | INFO     | sum of square deviations: 152858680.0
[2025-07-27 20:42:35] 2025-07-27 18:42:03,009 | INFO     | sum of deviations: -18568651869.0
[2025-07-27 20:42:35] 2025-07-27 18:42:03,009 | INFO     | mean x: 1753639202.0
[2025-07-27 20:42:35] 2025-07-27 18:42:03,009 | INFO     | mean y: 2993516.6075949366
[2025-07-27 20:42:35] 2025-07-27 18:42:03,009 | INFO     | -- intersect: 213027964331.27753
[2025-07-27 20:42:35] 2025-07-27 18:42:03,009 | INFO     | intersect: 213027964331.27753
[2025-07-27 20:42:35] 2025-07-27 18:42:03,009 | INFO     | chi2: 0.12406833039753025
[2025-07-27 20:42:35] 2025-07-27 18:42:03,010 | INFO     | -- intersect: 213027964331.27753
[2025-07-27 20:42:35] 2025-07-27 18:42:03,010 | INFO     | current memory leak: -121.48 B/s (using 79 data points, chi2=0.12)
[2025-07-27 20:42:35] 2025-07-27 18:42:03,010 | INFO     | could have reported an average CPU frequency of 2590 MHz (6 samples)
[2025-07-27 20:42:35] 2025-07-27 18:42:03,010 | INFO     | ..............................
[2025-07-27 20:42:35] 2025-07-27 18:42:03,010 | INFO     | . Timing measurements:
[2025-07-27 20:42:35] 2025-07-27 18:42:03,010 | INFO     | . get job = 0 s
[2025-07-27 20:42:35] 2025-07-27 18:42:03,010 | INFO     | . initial setup = 1 s
[2025-07-27 20:42:35] 2025-07-27 18:42:03,010 | INFO     | . payload setup = 5 s
[2025-07-27 20:42:35] 2025-07-27 18:42:03,011 | INFO     | . stage-in = 0 s
[2025-07-27 20:42:35] 2025-07-27 18:42:03,011 | INFO     | . payload execution = 5197 s
[2025-07-27 20:42:35] 2025-07-27 18:42:03,011 | INFO     | . stage-out = 0 s
[2025-07-27 20:42:35] 2025-07-27 18:42:03,011 | INFO     | . log creation = 0 s
[2025-07-27 20:42:35] 2025-07-27 18:42:03,011 | INFO     | ..............................
[2025-07-27 20:42:35] 2025-07-27 18:42:03,338 | INFO     | 
[2025-07-27 20:42:35] 2025-07-27 18:42:03,338 | INFO     | job summary report
[2025-07-27 20:42:35] 2025-07-27 18:42:03,339 | INFO     | --------------------------------------------------
[2025-07-27 20:42:35] 2025-07-27 18:42:03,339 | INFO     | PanDA job id: 6746137305
[2025-07-27 20:42:35] 2025-07-27 18:42:03,339 | INFO     | task id: 45758383
[2025-07-27 20:42:35] 2025-07-27 18:42:03,339 | INFO     | errors: (none)
[2025-07-27 20:42:35] 2025-07-27 18:42:03,339 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 20:42:35] 2025-07-27 18:42:03,339 | INFO     | pilot state: finished 
[2025-07-27 20:42:35] 2025-07-27 18:42:03,339 | INFO     | transexitcode: 0
[2025-07-27 20:42:35] 2025-07-27 18:42:03,339 | INFO     | exeerrorcode: 0
[2025-07-27 20:42:35] 2025-07-27 18:42:03,339 | INFO     | exeerrordiag: 
[2025-07-27 20:42:35] 2025-07-27 18:42:03,339 | INFO     | exitcode: 0
[2025-07-27 20:42:35] 2025-07-27 18:42:03,339 | INFO     | exitmsg: OK
[2025-07-27 20:42:35] 2025-07-27 18:42:03,339 | INFO     | cpuconsumptiontime: 56612 s
[2025-07-27 20:42:35] 2025-07-27 18:42:03,339 | INFO     | nevents: 400
[2025-07-27 20:42:35] 2025-07-27 18:42:03,340 | INFO     | neventsw: 0
[2025-07-27 20:42:35] 2025-07-27 18:42:03,340 | INFO     | pid: 3260845
[2025-07-27 20:42:35] 2025-07-27 18:42:03,340 | INFO     | pgrp: 3260845
[2025-07-27 20:42:35] 2025-07-27 18:42:03,340 | INFO     | corecount: 12
[2025-07-27 20:42:35] 2025-07-27 18:42:03,340 | INFO     | event service: False
[2025-07-27 20:42:35] 2025-07-27 18:42:03,340 | INFO     | sizes: {0: 2397292, 1: 2397491, 4: 2397753, 11: 2397781, 5207: 2424336, 5208: 2433334, 5209: 2433518, 5214: 2433712}
[2025-07-27 20:42:35] 2025-07-27 18:42:03,340 | INFO     | --------------------------------------------------
[2025-07-27 20:42:35] 2025-07-27 18:42:03,340 | INFO     | 
[2025-07-27 20:42:35] 2025-07-27 18:42:03,340 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-07-27 20:42:35] 2025-07-27 18:42:03,357 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 20:42:35] 2025-07-27 18:42:03,357 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 20:42:35] 2025-07-27 18:42:03,357 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 20:42:35] 2025-07-27 18:42:03,357 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 20:42:35] 2025-07-27 18:42:03,357 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 20:42:35] 2025-07-27 18:42:03,357 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 20:42:35] 2025-07-27 18:42:03,358 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 20:42:35] 2025-07-27 18:42:03,358 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 20:42:35] 2025-07-27 18:42:03,358 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 20:42:35] 2025-07-27 18:42:03,358 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 20:42:35] 2025-07-27 18:42:03,358 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 20:42:35] 2025-07-27 18:42:03,358 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 20:42:35] 2025-07-27 18:42:03,358 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 20:42:35] 2025-07-27 18:42:03,358 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 20:42:35] 2025-07-27 18:42:03,358 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 20:42:35] 2025-07-27 18:42:03,358 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 20:42:35] 2025-07-27 18:42:03,358 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 20:42:35] 2025-07-27 18:42:03,359 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 20:42:35] 2025-07-27 18:42:03,359 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 20:42:35] 2025-07-27 18:42:03,359 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 20:42:35] 2025-07-27 18:42:03,359 | INFO     | job 6746137305 has completed (purged errors)
[2025-07-27 20:42:35] 2025-07-27 18:42:03,359 | INFO     | overall cleanup function is called
[2025-07-27 20:42:35] 2025-07-27 18:42:04,366 | INFO     | --- collectZombieJob: --- 10, [3260845]
[2025-07-27 20:42:35] 2025-07-27 18:42:04,366 | INFO     | zombie collector waiting for pid 3260845
[2025-07-27 20:42:35] 2025-07-27 18:42:04,366 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 20:42:35] 2025-07-27 18:42:04,366 | INFO     | collected zombie processes
[2025-07-27 20:42:35] 2025-07-27 18:42:04,366 | INFO     | will attempt to kill all subprocesses of pid=3260845
[2025-07-27 20:42:35] 2025-07-27 18:42:04,442 | INFO     | process IDs to be killed: [3260845] (in reverse order)
[2025-07-27 20:42:35] 2025-07-27 18:42:04,474 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 20:42:35] 2025-07-27 18:42:04,474 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 20:42:35] 2025-07-27 18:42:04,476 | INFO     | did not find any defunct processes belonging to 3260845
[2025-07-27 20:42:35] 2025-07-27 18:42:04,479 | INFO     | did not find any defunct processes belonging to 3260845
[2025-07-27 20:42:35] 2025-07-27 18:42:04,479 | INFO     | ready for new job
[2025-07-27 20:42:35] 2025-07-27 18:42:04,479 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 20:42:35] 2025-07-27 18:42:04,480 | INFO     | ***************************************
[2025-07-27 20:42:35] 2025-07-27 18:42:04,480 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 20:42:35] 2025-07-27 18:42:04,480 | INFO     | ***************************************
[2025-07-27 20:42:35] 2025-07-27 18:42:04,480 | INFO     | 
[2025-07-27 20:42:35] 2025-07-27 18:42:04,481 | INFO     | architecture information:
[2025-07-27 20:42:35] 2025-07-27 18:42:04,481 | INFO     | executing command: cat /etc/os-release
[2025-07-27 20:42:35] 2025-07-27 18:42:04,493 | INFO     | cat /etc/os-release:
[2025-07-27 20:42:35] NAME="CentOS Linux"
[2025-07-27 20:42:35] VERSION="7 (Core)"
[2025-07-27 20:42:35] ID="centos"
[2025-07-27 20:42:35] ID_LIKE="rhel fedora"
[2025-07-27 20:42:35] VERSION_ID="7"
[2025-07-27 20:42:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 20:42:35] ANSI_COLOR="0;31"
[2025-07-27 20:42:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 20:42:35] HOME_URL="https://www.centos.org/"
[2025-07-27 20:42:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 20:42:35] 
[2025-07-27 20:42:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 20:42:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 20:42:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 20:42:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 20:42:35] 
[2025-07-27 20:42:35] 2025-07-27 18:42:04,493 | INFO     | ***************************************
[2025-07-27 20:42:35] 2025-07-27 18:42:04,996 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-07-27 20:42:35] 2025-07-27 18:42:05,007 | INFO     | sufficient remaining disk space (1817247219712 B)
[2025-07-27 20:42:35] 2025-07-27 18:42:05,007 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 20:42:35] 2025-07-27 18:42:05,007 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 20:42:35] 2025-07-27 18:42:05,008 | INFO     | update_server=False
[2025-07-27 20:42:35] 2025-07-27 18:42:05,008 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 20:42:35] 2025-07-27 18:42:05,008 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 20:42:35] 2025-07-27 18:42:05,008 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 20:42:35] 2025-07-27 18:42:05,008 | INFO     | aborting loop
[2025-07-27 20:42:35] 2025-07-27 18:42:05,307 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 20:42:35] 2025-07-27 18:42:05,391 | INFO     | all job control threads have been joined
[2025-07-27 20:42:35] 2025-07-27 18:42:05,862 | INFO     | all data control threads have been joined
[2025-07-27 20:42:35] 2025-07-27 18:42:05,983 | INFO     | all payload control threads have been joined
[2025-07-27 20:42:35] 2025-07-27 18:42:06,013 | INFO     | [job] retrieve thread has finished
[2025-07-27 20:42:35] 2025-07-27 18:42:06,013 | INFO     | [job] queue monitor thread has finished
[2025-07-27 20:42:35] 2025-07-27 18:42:06,014 | INFO     | [job] job monitor thread has finished
[2025-07-27 20:42:35] 2025-07-27 18:42:06,190 | INFO     | [data] copytool_in thread has finished
[2025-07-27 20:42:35] 2025-07-27 18:42:06,344 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 20:42:35] 2025-07-27 18:42:06,387 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 20:42:35] 2025-07-27 18:42:06,396 | INFO     | [job] control thread has finished
[2025-07-27 20:42:35] 2025-07-27 18:42:06,867 | INFO     | [data] control thread has finished
[2025-07-27 20:42:35] 2025-07-27 18:42:06,988 | INFO     | [payload] control thread has finished
[2025-07-27 20:42:35] 2025-07-27 18:42:07,185 | INFO     | [payload] failed_post thread has finished
[2025-07-27 20:42:35] 2025-07-27 18:42:07,296 | INFO     | [payload] validate_post thread has finished
[2025-07-27 20:42:35] 2025-07-27 18:42:07,313 | INFO     | [data] copytool_out thread has finished
[2025-07-27 20:42:35] 2025-07-27 18:42:07,404 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 20:42:35] 2025-07-27 18:42:07,421 | INFO     | [job] validate thread has finished
[2025-07-27 20:42:35] 2025-07-27 18:42:08,504 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 20:42:35] 2025-07-27 18:42:12,510 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 20:42:35] 2025-07-27 18:42:15,889 | INFO     | job.realtimelogging is not enabled
[2025-07-27 20:42:35] 2025-07-27 18:42:16,894 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 20:42:35] 2025-07-27 18:42:16,935 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139821367510848)>', '<ExcThread(monitor, started 139820236007168)>']
[2025-07-27 20:42:35] 2025-07-27 18:42:21,960 | INFO     | all workflow threads have been joined
[2025-07-27 20:42:35] 2025-07-27 18:42:21,960 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 20:42:35] 2025-07-27 18:42:21,961 | INFO     | traces error code: 0
[2025-07-27 20:42:35] 2025-07-27 18:42:21,961 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 20:42:35] 2025-07-27 18:42:35,026 | INFO     | PID=3253687 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 20:42:35] 2025-07-27 18:42:35,027 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 20:42:35] 2025-07-27 18:42:35,027 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 20:42:35] 2025-07-27 18:42:35,027 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 20:42:35] 2025-07-27 18:42:35,027 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 20:42:35] 2025-07-27 18:42:35,027 | CRITICAL | thread 'MainThread' is not alive
[2025-07-27 20:42:35] 2025-07-27 18:42:35,027 | INFO     | [monitor] control thread has ended
[2025-07-27 20:42:35] 2025-07-27 18:42:35,100 [wrapper] ==== pilot stdout END ====
[2025-07-27 20:42:35] 2025-07-27 18:42:35,102 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 20:42:35] 2025-07-27 18:42:35,105 [wrapper] pilotpid: 3253687
[2025-07-27 20:42:35] 2025-07-27 18:42:35,107 [wrapper] Pilot exit status: 0
[2025-07-27 20:42:35] 2025-07-27 18:42:35,115 [wrapper] pandaids: 6746137305
[2025-07-27 20:42:35] 2025-07-27 18:42:35,136 [wrapper] cleanup supervisor_pilot 3277465 3253688
[2025-07-27 20:42:35] 2025-07-27 18:42:35,138 [wrapper] Test setup, not cleaning
[2025-07-27 20:42:35] 2025-07-27 18:42:35,141 [wrapper] apfmon messages muted
[2025-07-27 20:42:35] 2025-07-27 18:42:35,143 [wrapper] ==== wrapper stdout END ====
[2025-07-27 20:42:35] 2025-07-27 18:42:35,145 [wrapper] ==== wrapper stderr END ====
[2025-07-27 20:42:35]  *** Error codes and diagnostics ***
[2025-07-27 20:42:35]     "exeErrorCode": 0,
[2025-07-27 20:42:35]     "exeErrorDiag": "",
[2025-07-27 20:42:35]     "pilotErrorCode": 0,
[2025-07-27 20:42:35]     "pilotErrorDiag": "",
[2025-07-27 20:42:35]  *** Listing of results directory ***
[2025-07-27 20:42:35] total 409420
[2025-07-27 20:42:35] -rw-r--r-- 1 boinc boinc    530466 Jul 27 07:42 pilot3.tar.gz
[2025-07-27 20:42:35] -rw-r--r-- 1 boinc boinc      5112 Jul 27 07:44 queuedata.json
[2025-07-27 20:42:35] -rwx------ 1 boinc boinc     36292 Jul 27 07:45 runpilot2-wrapper.sh
[2025-07-27 20:42:35] -rw-r--r-- 1 boinc boinc       100 Jul 27 19:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 20:42:35] -rwxr-xr-x 1 boinc boinc      7986 Jul 27 19:14 run_atlas
[2025-07-27 20:42:35] -rw-r--r-- 1 boinc boinc       105 Jul 27 19:14 job.xml
[2025-07-27 20:42:35] -rw-r--r-- 2 boinc boinc    542885 Jul 27 19:14 input.tar.gz
[2025-07-27 20:42:35] -rw-r--r-- 1 boinc boinc      6294 Jul 27 19:14 init_data.xml
[2025-07-27 20:42:35] -rw-r--r-- 2 boinc boinc 242454575 Jul 27 19:14 EVNT.45758381._000005.pool.root.1
[2025-07-27 20:42:35] -rw-r--r-- 2 boinc boinc     15095 Jul 27 19:14 start_atlas.sh
[2025-07-27 20:42:35] drwxrwx--x 2 boinc boinc        68 Jul 27 19:14 shared
[2025-07-27 20:42:35] -rw-r--r-- 1 boinc boinc         0 Jul 27 19:14 boinc_lockfile
[2025-07-27 20:42:35] -rw-r--r-- 1 boinc boinc      2554 Jul 27 19:14 pandaJob.out
[2025-07-27 20:42:35] -rw------- 1 boinc boinc    980117 Jul 27 19:14 agis_schedconf.cvmfs.json
[2025-07-27 20:42:35] -rw------- 1 boinc boinc   1593052 Jul 27 19:14 agis_ddmendpoints.agis.ALL.json
[2025-07-27 20:42:35] drwx------ 4 boinc boinc      4096 Jul 27 19:14 pilot3
[2025-07-27 20:42:35] -rw------- 1 boinc boinc 171170113 Jul 27 20:41 HITS.45758383._000123.pool.root.1
[2025-07-27 20:42:35] -rw------- 1 boinc boinc      1017 Jul 27 20:41 memory_monitor_summary.json
[2025-07-27 20:42:35] -rw-r--r-- 1 boinc boinc       529 Jul 27 20:41 boinc_task_state.xml
[2025-07-27 20:42:35] -rw------- 1 boinc boinc    379745 Jul 27 20:41 log.45758383._000123.job.log.tgz.1
[2025-07-27 20:42:35] -rw------- 1 boinc boinc        95 Jul 27 20:41 pilot_heartbeat.json
[2025-07-27 20:42:35] -rw------- 1 boinc boinc      7783 Jul 27 20:42 heartbeat.json
[2025-07-27 20:42:35] -rw-r--r-- 1 boinc boinc        27 Jul 27 20:42 wrapper_checkpoint.txt
[2025-07-27 20:42:35] -rw-r--r-- 1 boinc boinc      8192 Jul 27 20:42 boinc_mmap_file
[2025-07-27 20:42:35] -rw------- 1 boinc boinc       817 Jul 27 20:42 pilotlog.txt
[2025-07-27 20:42:35] -rw------- 1 boinc boinc    497821 Jul 27 20:42 log.45758383._000123.job.log.1
[2025-07-27 20:42:35] -rw------- 1 boinc boinc       357 Jul 27 20:42 output.list
[2025-07-27 20:42:35] -rw-r--r-- 1 boinc boinc       620 Jul 27 20:42 runtime_log
[2025-07-27 20:42:35] -rw------- 1 boinc boinc    901120 Jul 27 20:42 result.tar.gz
[2025-07-27 20:42:35] -rw-r--r-- 1 boinc boinc      8684 Jul 27 20:42 runtime_log.err
[2025-07-27 20:42:35] -rw------- 1 boinc boinc       656 Jul 27 20:42 rjSNDm5M9z7n9Rq4apOajLDm4fhM0noT9bVof3QYDmV11KDm29bEHn.diag
[2025-07-27 20:42:35] -rw-r--r-- 1 boinc boinc     21663 Jul 27 20:42 stderr.txt
[2025-07-27 20:42:35] HITS file was successfully produced:
[2025-07-27 20:42:35] -rw------- 1 boinc boinc 171170113 Jul 27 20:41 shared/HITS.pool.root.1
[2025-07-27 20:42:35]  *** Contents of shared directory: ***
[2025-07-27 20:42:35] total 405364
[2025-07-27 20:42:35] -rw-r--r-- 2 boinc boinc    542885 Jul 27 19:14 input.tar.gz
[2025-07-27 20:42:35] -rw-r--r-- 2 boinc boinc 242454575 Jul 27 19:14 ATLAS.root_0
[2025-07-27 20:42:35] -rw-r--r-- 2 boinc boinc     15095 Jul 27 19:14 start_atlas.sh
[2025-07-27 20:42:35] -rw------- 1 boinc boinc 171170113 Jul 27 20:41 HITS.pool.root.1
[2025-07-27 20:42:35] -rw------- 1 boinc boinc    901120 Jul 27 20:42 result.tar.gz
20:42:36 (3250008): run_atlas exited; CPU time 56649.611971
20:42:36 (3250008): called boinc_finish(0)

</stderr_txt>
]]>

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