Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:20:26 (915580): wrapper (7.7.26015): starting
07:20:26 (915580): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 07:20:26] Arguments: --nthreads 8
[2025-07-27 07:20:26] Threads: 8
[2025-07-27 07:20:26] Checking for CVMFS
[2025-07-27 07:20:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 07:20:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 07:20:26] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 07:20:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 07:20:27] 2.12.6.0 3144059 18296 339248 148811 1 64 26238102 40960000 11980 16776704 0 60254287 99.756 76425852 28556 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 07:20:27] CVMFS is ok
[2025-07-27 07:20:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 07:20:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 07:20:27] Further information can be found at the LHC@home message board.
[2025-07-27 07:20:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 07:20:27] Checking for apptainer binary...
[2025-07-27 07:20:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 07:20:27] Running /usr/bin/apptainer --version
[2025-07-27 07:20:27] apptainer version 1.4.1-1.el9
[2025-07-27 07:20:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 07:20:27] c7-11-15.aglt2.org
[2025-07-27 07:20:27] apptainer works
[2025-07-27 07:20:27] Set ATHENA_PROC_NUMBER=8
[2025-07-27 07:20:27] Set ATHENA_CORE_NUMBER=8
[2025-07-27 07:20:27] Starting ATLAS job with PandaID=6746200082
[2025-07-27 07:20:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 08:54:36]  *** The last 200 lines of the pilot log: ***
[2025-07-27 08:54:36]  replicas=None
[2025-07-27 08:54:36]  scope=mc23_13p6TeV
[2025-07-27 08:54:36]  status=None
[2025-07-27 08:54:36]  status_code=0
[2025-07-27 08:54:36]  storage_token=
[2025-07-27 08:54:36]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6746200082/log.45759456._000045.job.log.tgz.1
[2025-07-27 08:54:36]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f9/5b/log.45759456._000045.job.log.tgz.1
[2025-07-27 08:54:36]  workdir=None
[2025-07-27 08:54:36] ]
[2025-07-27 08:54:36] 2025-07-27 12:53:54,281 | INFO     | transferring file log.45759456._000045.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6746200082/log.45759456._000045.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 08:54:36] 2025-07-27 12:53:54,282 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6746200082/log.45759456._000045.job.log.tgz.1 /tmp/boinchome/slots/1/log.45759456._000045.job
[2025-07-27 08:54:36] 2025-07-27 12:53:54,331 | INFO     | adding to output.list: log.45759456._000045.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f9/5b/log.45759456._000045.job.log.tg
[2025-07-27 08:54:36] 2025-07-27 12:53:54,332 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 08:54:36] 2025-07-27 12:53:54,332 | INFO     | summary of transferred files:
[2025-07-27 08:54:36] 2025-07-27 12:53:54,332 | INFO     |  -- lfn=log.45759456._000045.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 08:54:36] 2025-07-27 12:53:54,332 | INFO     | stage-out finished correctly
[2025-07-27 08:54:36] 2025-07-27 12:53:55,264 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 08:54:36] 2025-07-27 12:53:55,339 | INFO     | job 6746200082 has state=finished
[2025-07-27 08:54:36] 2025-07-27 12:53:55,340 | INFO     | preparing for final server update for job 6746200082 in state='finished'
[2025-07-27 08:54:36] 2025-07-27 12:53:55,340 | INFO     | this job has now completed (state=finished)
[2025-07-27 08:54:36] 2025-07-27 12:53:55,340 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 08:54:36] 2025-07-27 12:53:55,340 | INFO     | log transfer has been attempted: DONE
[2025-07-27 08:54:36] 2025-07-27 12:53:55,340 | INFO     | job 6746200082 has finished - writing final server update
[2025-07-27 08:54:36] 2025-07-27 12:53:55,340 | INFO     | total number of processed events: 400 (read)
[2025-07-27 08:54:36] 2025-07-27 12:53:55,341 | INFO     | executing command: lscpu
[2025-07-27 08:54:36] 2025-07-27 12:53:55,419 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 08:54:36] 2025-07-27 12:53:55,444 | INFO     | monitor loop #409: job 0:6746200082 is in state 'finished'
[2025-07-27 08:54:36] 2025-07-27 12:53:55,444 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 08:54:36] 2025-07-27 12:53:57,425 | INFO     | PID=920037 has CPU usage=11.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 08:54:36] 2025-07-27 12:53:57,425 | INFO     | .. there are 11 such processes running
[2025-07-27 08:54:36] 2025-07-27 12:53:57,947 | INFO     | monitor loop #410: job 0:6746200082 is in state 'finished'
[2025-07-27 08:54:36] 2025-07-27 12:53:57,947 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 08:54:36] 2025-07-27 12:54:00,450 | INFO     | monitor loop #411: job 0:6746200082 is in state 'finished'
[2025-07-27 08:54:36] 2025-07-27 12:54:00,453 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 08:54:36] 2025-07-27 12:54:02,861 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 08:54:36] 2025-07-27 12:54:02,867 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3253.922234375
[2025-07-27 08:54:36] 2025-07-27 12:54:02,877 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6746200082/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 08:54:36] 2025-07-27 12:54:02,877 | INFO     | extracted standard info from prmon json
[2025-07-27 08:54:36] 2025-07-27 12:54:02,878 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 08:54:36] 2025-07-27 12:54:02,878 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 08:54:36] 2025-07-27 12:54:02,878 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 08:54:36] 2025-07-27 12:54:02,878 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 08:54:36] 2025-07-27 12:54:02,879 | INFO     | fitting pss+swap vs Time
[2025-07-27 08:54:36] 2025-07-27 12:54:02,880 | INFO     | sum of square deviations: 183761585.0
[2025-07-27 08:54:36] 2025-07-27 12:54:02,880 | INFO     | sum of deviations: -18876968927.0
[2025-07-27 08:54:36] 2025-07-27 12:54:02,880 | INFO     | mean x: 1753618124.5
[2025-07-27 08:54:36] 2025-07-27 12:54:02,880 | INFO     | mean y: 2440708.285714286
[2025-07-27 08:54:36] 2025-07-27 12:54:02,880 | INFO     | -- intersect: 180143436150.88876
[2025-07-27 08:54:36] 2025-07-27 12:54:02,880 | INFO     | intersect: 180143436150.88876
[2025-07-27 08:54:36] 2025-07-27 12:54:02,880 | INFO     | chi2: 0.1889613892678405
[2025-07-27 08:54:36] 2025-07-27 12:54:02,880 | INFO     | -- intersect: 180143436150.88876
[2025-07-27 08:54:36] 2025-07-27 12:54:02,881 | INFO     | current memory leak: -102.73 B/s (using 84 data points, chi2=0.19)
[2025-07-27 08:54:36] 2025-07-27 12:54:02,881 | INFO     | could have reported an average CPU frequency of 3250 MHz (7 samples)
[2025-07-27 08:54:36] 2025-07-27 12:54:02,881 | INFO     | ..............................
[2025-07-27 08:54:36] 2025-07-27 12:54:02,881 | INFO     | . Timing measurements:
[2025-07-27 08:54:36] 2025-07-27 12:54:02,881 | INFO     | . get job = 0 s
[2025-07-27 08:54:36] 2025-07-27 12:54:02,881 | INFO     | . initial setup = 2 s
[2025-07-27 08:54:36] 2025-07-27 12:54:02,881 | INFO     | . payload setup = 12 s
[2025-07-27 08:54:36] 2025-07-27 12:54:02,881 | INFO     | . stage-in = 0 s
[2025-07-27 08:54:36] 2025-07-27 12:54:02,881 | INFO     | . payload execution = 5550 s
[2025-07-27 08:54:36] 2025-07-27 12:54:02,881 | INFO     | . stage-out = 0 s
[2025-07-27 08:54:36] 2025-07-27 12:54:02,881 | INFO     | . log creation = 0 s
[2025-07-27 08:54:36] 2025-07-27 12:54:02,881 | INFO     | ..............................
[2025-07-27 08:54:36] 2025-07-27 12:54:02,952 | INFO     | 
[2025-07-27 08:54:36] 2025-07-27 12:54:02,952 | INFO     | job summary report
[2025-07-27 08:54:36] 2025-07-27 12:54:02,952 | INFO     | --------------------------------------------------
[2025-07-27 08:54:36] 2025-07-27 12:54:02,953 | INFO     | PanDA job id: 6746200082
[2025-07-27 08:54:36] 2025-07-27 12:54:02,953 | INFO     | task id: 45759456
[2025-07-27 08:54:36] 2025-07-27 12:54:02,953 | INFO     | errors: (none)
[2025-07-27 08:54:36] 2025-07-27 12:54:02,953 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 08:54:36] 2025-07-27 12:54:02,953 | INFO     | pilot state: finished 
[2025-07-27 08:54:36] 2025-07-27 12:54:02,953 | INFO     | transexitcode: 0
[2025-07-27 08:54:36] 2025-07-27 12:54:02,953 | INFO     | exeerrorcode: 0
[2025-07-27 08:54:36] 2025-07-27 12:54:02,953 | INFO     | exeerrordiag: 
[2025-07-27 08:54:36] 2025-07-27 12:54:02,953 | INFO     | exitcode: 0
[2025-07-27 08:54:36] 2025-07-27 12:54:02,953 | INFO     | exitmsg: OK
[2025-07-27 08:54:36] 2025-07-27 12:54:02,953 | INFO     | cpuconsumptiontime: 39603 s
[2025-07-27 08:54:36] 2025-07-27 12:54:02,953 | INFO     | nevents: 400
[2025-07-27 08:54:36] 2025-07-27 12:54:02,953 | INFO     | neventsw: 0
[2025-07-27 08:54:36] 2025-07-27 12:54:02,953 | INFO     | pid: 929367
[2025-07-27 08:54:36] 2025-07-27 12:54:02,953 | INFO     | pgrp: 929367
[2025-07-27 08:54:36] 2025-07-27 12:54:02,953 | INFO     | corecount: 8
[2025-07-27 08:54:36] 2025-07-27 12:54:02,954 | INFO     | event service: False
[2025-07-27 08:54:36] 2025-07-27 12:54:02,954 | INFO     | sizes: {0: 2397461, 1: 2397489, 8: 2397751, 11: 2397779, 5566: 2424479, 5568: 2433477, 5569: 2433661, 5577: 2433855}
[2025-07-27 08:54:36] 2025-07-27 12:54:02,954 | INFO     | --------------------------------------------------
[2025-07-27 08:54:36] 2025-07-27 12:54:02,954 | INFO     | 
[2025-07-27 08:54:36] 2025-07-27 12:54:02,954 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-07-27 08:54:36] 2025-07-27 12:54:02,992 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 08:54:36] 2025-07-27 12:54:02,992 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 08:54:36] 2025-07-27 12:54:02,992 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 08:54:36] 2025-07-27 12:54:02,992 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 08:54:36] 2025-07-27 12:54:02,992 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 08:54:36] 2025-07-27 12:54:02,992 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 08:54:36] 2025-07-27 12:54:02,992 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 08:54:36] 2025-07-27 12:54:02,992 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 08:54:36] 2025-07-27 12:54:02,992 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 08:54:36] 2025-07-27 12:54:02,992 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 08:54:36] 2025-07-27 12:54:02,992 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 08:54:36] 2025-07-27 12:54:02,992 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 08:54:36] 2025-07-27 12:54:02,992 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 08:54:36] 2025-07-27 12:54:02,992 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 08:54:36] 2025-07-27 12:54:02,993 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 08:54:36] 2025-07-27 12:54:02,993 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 08:54:36] 2025-07-27 12:54:02,993 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 08:54:36] 2025-07-27 12:54:02,993 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 08:54:36] 2025-07-27 12:54:02,993 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 08:54:36] 2025-07-27 12:54:02,993 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 08:54:36] 2025-07-27 12:54:02,993 | INFO     | job 6746200082 has completed (purged errors)
[2025-07-27 08:54:36] 2025-07-27 12:54:02,993 | INFO     | overall cleanup function is called
[2025-07-27 08:54:36] 2025-07-27 12:54:04,001 | INFO     | --- collectZombieJob: --- 10, [929367]
[2025-07-27 08:54:36] 2025-07-27 12:54:04,002 | INFO     | zombie collector waiting for pid 929367
[2025-07-27 08:54:36] 2025-07-27 12:54:04,002 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 08:54:36] 2025-07-27 12:54:04,002 | INFO     | collected zombie processes
[2025-07-27 08:54:36] 2025-07-27 12:54:04,002 | INFO     | will attempt to kill all subprocesses of pid=929367
[2025-07-27 08:54:36] 2025-07-27 12:54:04,328 | INFO     | process IDs to be killed: [929367] (in reverse order)
[2025-07-27 08:54:36] 2025-07-27 12:54:04,443 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 08:54:36] 2025-07-27 12:54:04,443 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 08:54:36] 2025-07-27 12:54:04,458 | INFO     | did not find any defunct processes belonging to 929367
[2025-07-27 08:54:36] 2025-07-27 12:54:04,472 | INFO     | did not find any defunct processes belonging to 929367
[2025-07-27 08:54:36] 2025-07-27 12:54:04,472 | INFO     | ready for new job
[2025-07-27 08:54:36] 2025-07-27 12:54:04,472 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 08:54:36] 2025-07-27 12:54:04,474 | INFO     | ***************************************
[2025-07-27 08:54:36] 2025-07-27 12:54:04,476 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 08:54:36] 2025-07-27 12:54:04,476 | INFO     | ***************************************
[2025-07-27 08:54:36] 2025-07-27 12:54:04,476 | INFO     | 
[2025-07-27 08:54:36] 2025-07-27 12:54:04,492 | INFO     | architecture information:
[2025-07-27 08:54:36] 2025-07-27 12:54:04,493 | INFO     | executing command: cat /etc/os-release
[2025-07-27 08:54:36] 2025-07-27 12:54:04,518 | INFO     | cat /etc/os-release:
[2025-07-27 08:54:36] NAME="CentOS Linux"
[2025-07-27 08:54:36] VERSION="7 (Core)"
[2025-07-27 08:54:36] ID="centos"
[2025-07-27 08:54:36] ID_LIKE="rhel fedora"
[2025-07-27 08:54:36] VERSION_ID="7"
[2025-07-27 08:54:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 08:54:36] ANSI_COLOR="0;31"
[2025-07-27 08:54:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 08:54:36] HOME_URL="https://www.centos.org/"
[2025-07-27 08:54:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 08:54:36] 
[2025-07-27 08:54:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 08:54:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 08:54:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 08:54:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 08:54:36] 
[2025-07-27 08:54:36] 2025-07-27 12:54:04,518 | INFO     | ***************************************
[2025-07-27 08:54:36] 2025-07-27 12:54:05,022 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-07-27 08:54:36] 2025-07-27 12:54:05,047 | INFO     | sufficient remaining disk space (85880471552 B)
[2025-07-27 08:54:36] 2025-07-27 12:54:05,048 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 08:54:36] 2025-07-27 12:54:05,048 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 08:54:36] 2025-07-27 12:54:05,048 | INFO     | update_server=False
[2025-07-27 08:54:36] 2025-07-27 12:54:05,048 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 08:54:36] 2025-07-27 12:54:05,049 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 08:54:36] 2025-07-27 12:54:05,237 | INFO     | all payload control threads have been joined
[2025-07-27 08:54:36] 2025-07-27 12:54:05,466 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-27 08:54:36] 2025-07-27 12:54:05,466 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-27 08:54:36] 2025-07-27 12:54:05,466 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 08:54:36] 2025-07-27 12:54:05,466 | INFO     | will abort loop
[2025-07-27 08:54:36] 2025-07-27 12:54:05,794 | INFO     | all data control threads have been joined
[2025-07-27 08:54:36] 2025-07-27 12:54:05,851 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 08:54:36] 2025-07-27 12:54:05,876 | INFO     | all job control threads have been joined
[2025-07-27 08:54:36] 2025-07-27 12:54:06,053 | INFO     | [job] retrieve thread has finished
[2025-07-27 08:54:36] 2025-07-27 12:54:06,186 | INFO     | [payload] failed_post thread has finished
[2025-07-27 08:54:36] 2025-07-27 12:54:06,242 | INFO     | [payload] control thread has finished
[2025-07-27 08:54:36] 2025-07-27 12:54:06,318 | INFO     | [payload] validate_post thread has finished
[2025-07-27 08:54:36] 2025-07-27 12:54:06,471 | INFO     | [job] job monitor thread has finished
[2025-07-27 08:54:36] 2025-07-27 12:54:06,799 | INFO     | [data] control thread has finished
[2025-07-27 08:54:36] 2025-07-27 12:54:06,881 | INFO     | [job] control thread has finished
[2025-07-27 08:54:36] 2025-07-27 12:54:06,893 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 08:54:36] 2025-07-27 12:54:06,937 | INFO     | [job] validate thread has finished
[2025-07-27 08:54:36] 2025-07-27 12:54:06,938 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 08:54:36] 2025-07-27 12:54:07,056 | INFO     | [data] copytool_out thread has finished
[2025-07-27 08:54:36] 2025-07-27 12:54:07,108 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 08:54:36] 2025-07-27 12:54:07,437 | INFO     | [data] copytool_in thread has finished
[2025-07-27 08:54:36] 2025-07-27 12:54:07,965 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 08:54:36] 2025-07-27 12:54:08,971 | INFO     | [job] queue monitor thread has finished
[2025-07-27 08:54:36] 2025-07-27 12:54:09,861 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 08:54:36] 2025-07-27 12:54:15,727 | INFO     | job.realtimelogging is not enabled
[2025-07-27 08:54:36] 2025-07-27 12:54:16,734 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 08:54:36] 2025-07-27 12:54:18,746 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139705422518080)>', '<ExcThread(monitor, started 139704926193408)>']
[2025-07-27 08:54:36] 2025-07-27 12:54:23,773 | INFO     | all workflow threads have been joined
[2025-07-27 08:54:36] 2025-07-27 12:54:23,775 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 08:54:36] 2025-07-27 12:54:23,775 | INFO     | traces error code: 0
[2025-07-27 08:54:36] 2025-07-27 12:54:23,775 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 08:54:36] 2025-07-27 12:54:35,914 | INFO     | PID=920037 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 08:54:36] 2025-07-27 12:54:35,915 | INFO     | .. there are 11 such processes running
[2025-07-27 08:54:36] 2025-07-27 12:54:35,916 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 08:54:36] 2025-07-27 12:54:35,916 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 08:54:36] 2025-07-27 12:54:35,916 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 08:54:36] 2025-07-27 12:54:35,916 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 08:54:36] 2025-07-27 12:54:35,916 | INFO     | [monitor] control thread has ended
[2025-07-27 08:54:36] 2025-07-27 12:54:36,058 [wrapper] ==== pilot stdout END ====
[2025-07-27 08:54:36] 2025-07-27 12:54:36,067 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 08:54:36] 2025-07-27 12:54:36,080 [wrapper] pilotpid: 920037
[2025-07-27 08:54:36] 2025-07-27 12:54:36,092 [wrapper] Pilot exit status: 0
[2025-07-27 08:54:36] 2025-07-27 12:54:36,122 [wrapper] pandaids: 6746200082
[2025-07-27 08:54:36] 2025-07-27 12:54:36,224 [wrapper] cleanup supervisor_pilot 1241874 920038
[2025-07-27 08:54:36] 2025-07-27 12:54:36,229 [wrapper] Test setup, not cleaning
[2025-07-27 08:54:36] 2025-07-27 12:54:36,233 [wrapper] apfmon messages muted
[2025-07-27 08:54:36] 2025-07-27 12:54:36,236 [wrapper] ==== wrapper stdout END ====
[2025-07-27 08:54:36] 2025-07-27 12:54:36,238 [wrapper] ==== wrapper stderr END ====
[2025-07-27 08:54:36]  *** Error codes and diagnostics ***
[2025-07-27 08:54:36]     "exeErrorCode": 0,
[2025-07-27 08:54:36]     "exeErrorDiag": "",
[2025-07-27 08:54:36]     "pilotErrorCode": 0,
[2025-07-27 08:54:36]     "pilotErrorDiag": "",
[2025-07-27 08:54:36]  *** Listing of results directory ***
[2025-07-27 08:54:36] total 410648
[2025-07-27 08:54:36] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 01:42 pilot3.tar.gz
[2025-07-27 08:54:36] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 01:54 queuedata.json
[2025-07-27 08:54:36] -rwx------. 1 boincer umatlas     36292 Jul 27 01:55 runpilot2-wrapper.sh
[2025-07-27 08:54:36] -rw-r--r--. 1 boincer umatlas       100 Jul 27 07:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 08:54:36] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 07:20 run_atlas
[2025-07-27 08:54:36] -rw-r--r--. 1 boincer umatlas       105 Jul 27 07:20 job.xml
[2025-07-27 08:54:36] -rw-r--r--. 2 boincer umatlas 242720771 Jul 27 07:20 EVNT.45759449._000002.pool.root.1
[2025-07-27 08:54:36] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 07:20 start_atlas.sh
[2025-07-27 08:54:36] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 07:20 shared
[2025-07-27 08:54:36] -rw-r--r--. 2 boincer umatlas    542887 Jul 27 07:20 input.tar.gz
[2025-07-27 08:54:36] -rw-r--r--. 1 boincer umatlas         0 Jul 27 07:20 boinc_lockfile
[2025-07-27 08:54:36] -rw-r--r--. 1 boincer umatlas      2554 Jul 27 07:20 pandaJob.out
[2025-07-27 08:54:36] -rw-------. 1 boincer umatlas    980109 Jul 27 07:20 agis_schedconf.cvmfs.json
[2025-07-27 08:54:36] -rw-------. 1 boincer umatlas   1593052 Jul 27 07:20 agis_ddmendpoints.agis.ALL.json
[2025-07-27 08:54:36] drwx------. 4 boincer umatlas      4096 Jul 27 07:20 pilot3
[2025-07-27 08:54:36] -rw-r--r--. 1 boincer umatlas      6896 Jul 27 08:49 init_data.xml
[2025-07-27 08:54:36] -rw-r--r--. 1 boincer umatlas       529 Jul 27 08:53 boinc_task_state.xml
[2025-07-27 08:54:36] -rw-------. 1 boincer umatlas 172180980 Jul 27 08:53 HITS.45759456._000045.pool.root.1
[2025-07-27 08:54:36] -rw-------. 1 boincer umatlas      1041 Jul 27 08:53 memory_monitor_summary.json
[2025-07-27 08:54:36] -rw-------. 1 boincer umatlas    321913 Jul 27 08:53 log.45759456._000045.job.log.tgz.1
[2025-07-27 08:54:36] -rw-------. 1 boincer umatlas        95 Jul 27 08:53 pilot_heartbeat.json
[2025-07-27 08:54:36] -rw-------. 1 boincer umatlas      7762 Jul 27 08:54 heartbeat.json
[2025-07-27 08:54:36] -rw-------. 1 boincer umatlas       822 Jul 27 08:54 pilotlog.txt
[2025-07-27 08:54:36] -rw-r--r--. 1 boincer umatlas        27 Jul 27 08:54 wrapper_checkpoint.txt
[2025-07-27 08:54:36] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 08:54 boinc_mmap_file
[2025-07-27 08:54:36] -rw-------. 1 boincer umatlas    540479 Jul 27 08:54 log.45759456._000045.job.log.1
[2025-07-27 08:54:36] -rw-------. 1 boincer umatlas       357 Jul 27 08:54 output.list
[2025-07-27 08:54:36] -rw-r--r--. 1 boincer umatlas       620 Jul 27 08:54 runtime_log
[2025-07-27 08:54:36] -rw-------. 1 boincer umatlas    880640 Jul 27 08:54 result.tar.gz
[2025-07-27 08:54:36] -rw-r--r--. 1 boincer umatlas      8660 Jul 27 08:54 runtime_log.err
[2025-07-27 08:54:36] -rw-------. 1 boincer umatlas       654 Jul 27 08:54 akYNDm2W9z7n9Rq4apOajLDm4fhM0noT9bVof3QYDmx21KDmMMgZcm.diag
[2025-07-27 08:54:36] -rw-r--r--. 1 boincer umatlas     21921 Jul 27 08:54 stderr.txt
[2025-07-27 08:54:36] HITS file was successfully produced:
[2025-07-27 08:54:36] -rw-------. 1 boincer umatlas 172180980 Jul 27 08:53 shared/HITS.pool.root.1
[2025-07-27 08:54:36]  *** Contents of shared directory: ***
[2025-07-27 08:54:36] total 406600
[2025-07-27 08:54:36] -rw-r--r--. 2 boincer umatlas 242720771 Jul 27 07:20 ATLAS.root_0
[2025-07-27 08:54:36] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 07:20 start_atlas.sh
[2025-07-27 08:54:36] -rw-r--r--. 2 boincer umatlas    542887 Jul 27 07:20 input.tar.gz
[2025-07-27 08:54:36] -rw-------. 1 boincer umatlas 172180980 Jul 27 08:53 HITS.pool.root.1
[2025-07-27 08:54:36] -rw-------. 1 boincer umatlas    880640 Jul 27 08:54 result.tar.gz
08:54:38 (915580): run_atlas exited; CPU time 39677.802172
08:54:38 (915580): called boinc_finish(0)

</stderr_txt>
]]>

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