Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:14:40 (29974): wrapper (7.7.26015): starting
07:14:40 (29974): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 07:14:40] Arguments: --nthreads 12
[2025-07-27 07:14:40] Threads: 12
[2025-07-27 07:14:40] Checking for CVMFS
[2025-07-27 07:14:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 07:14:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 07:14:40] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 07:14:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 07:14:41] 2.11.2.0 2979 111928 104024 148810 2 57 15812247 20275201 1 130560 0 38026580 99.971 9515297 10569 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 07:14:41] CVMFS is ok
[2025-07-27 07:14:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 07:14:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 07:14:41] Further information can be found at the LHC@home message board.
[2025-07-27 07:14:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 07:14:41] Checking for apptainer binary...
[2025-07-27 07:14:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 07:14:41] Running /usr/bin/apptainer --version
[2025-07-27 07:14:41] apptainer version 1.3.2-1.el7
[2025-07-27 07:14:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 07:14:42] c-205-7.aglt2.org
[2025-07-27 07:14:42] apptainer works
[2025-07-27 07:14:42] Set ATHENA_PROC_NUMBER=12
[2025-07-27 07:14:42] Set ATHENA_CORE_NUMBER=12
[2025-07-27 07:14:42] Starting ATLAS job with PandaID=6746209483
[2025-07-27 07:14:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 08:46:06]  *** The last 200 lines of the pilot log: ***
[2025-07-27 08:46:06]  lfn=log.45759518._000080.job.log.tgz.1
[2025-07-27 08:46:06]  mtime=0
[2025-07-27 08:46:06]  protocol_id=None
[2025-07-27 08:46:06]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 08:46:06]  replicas=None
[2025-07-27 08:46:06]  scope=mc23_13p6TeV
[2025-07-27 08:46:06]  status=None
[2025-07-27 08:46:06]  status_code=0
[2025-07-27 08:46:06]  storage_token=
[2025-07-27 08:46:06]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6746209483/log.45759518._000080.job.log.tgz.1
[2025-07-27 08:46:06]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c6/36/log.45759518._000080.job.log.tgz.1
[2025-07-27 08:46:06]  workdir=None
[2025-07-27 08:46:06] ]
[2025-07-27 08:46:06] 2025-07-27 12:45:25,194 | INFO     | transferring file log.45759518._000080.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6746209483/log.45759518._000080.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 08:46:06] 2025-07-27 12:45:25,195 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6746209483/log.45759518._000080.job.log.tgz.1 /tmp/boinchome/slots/0/log.45759518._000080.job
[2025-07-27 08:46:06] 2025-07-27 12:45:25,217 | INFO     | adding to output.list: log.45759518._000080.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c6/36/log.45759518._000080.job.log.tg
[2025-07-27 08:46:06] 2025-07-27 12:45:25,217 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 08:46:06] 2025-07-27 12:45:25,218 | INFO     | summary of transferred files:
[2025-07-27 08:46:06] 2025-07-27 12:45:25,218 | INFO     |  -- lfn=log.45759518._000080.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 08:46:06] 2025-07-27 12:45:25,218 | INFO     | stage-out finished correctly
[2025-07-27 08:46:06] 2025-07-27 12:45:28,394 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 08:46:06] 2025-07-27 12:45:29,424 | INFO     | job 6746209483 has state=finished
[2025-07-27 08:46:06] 2025-07-27 12:45:29,424 | INFO     | preparing for final server update for job 6746209483 in state='finished'
[2025-07-27 08:46:06] 2025-07-27 12:45:29,424 | INFO     | this job has now completed (state=finished)
[2025-07-27 08:46:06] 2025-07-27 12:45:29,425 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 08:46:06] 2025-07-27 12:45:29,425 | INFO     | log transfer has been attempted: DONE
[2025-07-27 08:46:06] 2025-07-27 12:45:29,425 | INFO     | job 6746209483 has finished - writing final server update
[2025-07-27 08:46:06] 2025-07-27 12:45:29,425 | INFO     | total number of processed events: 400 (read)
[2025-07-27 08:46:06] 2025-07-27 12:45:29,426 | INFO     | executing command: lscpu
[2025-07-27 08:46:06] 2025-07-27 12:45:29,453 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 08:46:06] 2025-07-27 12:45:30,202 | WARNING  | process 7867 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 08:46:06] 2025-07-27 12:45:30,202 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6746209483/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 08:46:06] 2025-07-27 12:45:30,296 | INFO     | number of running child processes to parent process 7867: 1
[2025-07-27 08:46:06] 2025-07-27 12:45:30,296 | INFO     | maximum number of monitored processes: 6
[2025-07-27 08:46:06] 2025-07-27 12:45:32,799 | INFO     | monitor loop #405: job 0:6746209483 is in state 'finished'
[2025-07-27 08:46:06] 2025-07-27 12:45:32,799 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 08:46:06] 2025-07-27 12:45:34,419 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-27 08:46:06] 2025-07-27 12:45:34,423 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-07-27 08:46:06] 2025-07-27 12:45:34,426 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6746209483/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 08:46:06] 2025-07-27 12:45:34,427 | INFO     | extracted standard info from prmon json
[2025-07-27 08:46:06] 2025-07-27 12:45:34,427 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 08:46:06] 2025-07-27 12:45:34,427 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 08:46:06] 2025-07-27 12:45:34,427 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 08:46:06] 2025-07-27 12:45:34,427 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 08:46:06] 2025-07-27 12:45:34,429 | INFO     | fitting pss+swap vs Time
[2025-07-27 08:46:06] 2025-07-27 12:45:34,429 | INFO     | sum of square deviations: 170944600.5
[2025-07-27 08:46:06] 2025-07-27 12:45:34,430 | INFO     | sum of deviations: 1236609507.0000005
[2025-07-27 08:46:06] 2025-07-27 12:45:34,430 | INFO     | mean x: 1753617702.5
[2025-07-27 08:46:06] 2025-07-27 12:45:34,430 | INFO     | mean y: 2733245.1219512196
[2025-07-27 08:46:06] 2025-07-27 12:45:34,430 | INFO     | -- intersect: -12682898919.989918
[2025-07-27 08:46:06] 2025-07-27 12:45:34,430 | INFO     | intersect: -12682898919.989918
[2025-07-27 08:46:06] 2025-07-27 12:45:34,430 | INFO     | chi2: 0.0989281371497737
[2025-07-27 08:46:06] 2025-07-27 12:45:34,431 | INFO     | -- intersect: -12682898919.989918
[2025-07-27 08:46:06] 2025-07-27 12:45:34,431 | INFO     | current memory leak: 7.23 B/s (using 82 data points, chi2=0.10)
[2025-07-27 08:46:06] 2025-07-27 12:45:34,431 | INFO     | could have reported an average CPU frequency of 2074 MHz (6 samples)
[2025-07-27 08:46:06] 2025-07-27 12:45:34,431 | INFO     | ..............................
[2025-07-27 08:46:06] 2025-07-27 12:45:34,431 | INFO     | . Timing measurements:
[2025-07-27 08:46:06] 2025-07-27 12:45:34,431 | INFO     | . get job = 0 s
[2025-07-27 08:46:06] 2025-07-27 12:45:34,432 | INFO     | . initial setup = 3 s
[2025-07-27 08:46:06] 2025-07-27 12:45:34,432 | INFO     | . payload setup = 9 s
[2025-07-27 08:46:06] 2025-07-27 12:45:34,432 | INFO     | . stage-in = 0 s
[2025-07-27 08:46:06] 2025-07-27 12:45:34,432 | INFO     | . payload execution = 5398 s
[2025-07-27 08:46:06] 2025-07-27 12:45:34,432 | INFO     | . stage-out = 0 s
[2025-07-27 08:46:06] 2025-07-27 12:45:34,432 | INFO     | . log creation = 0 s
[2025-07-27 08:46:06] 2025-07-27 12:45:34,432 | INFO     | ..............................
[2025-07-27 08:46:06] 2025-07-27 12:45:34,550 | INFO     | 
[2025-07-27 08:46:06] 2025-07-27 12:45:34,550 | INFO     | job summary report
[2025-07-27 08:46:06] 2025-07-27 12:45:34,550 | INFO     | --------------------------------------------------
[2025-07-27 08:46:06] 2025-07-27 12:45:34,550 | INFO     | PanDA job id: 6746209483
[2025-07-27 08:46:06] 2025-07-27 12:45:34,551 | INFO     | task id: 45759518
[2025-07-27 08:46:06] 2025-07-27 12:45:34,551 | INFO     | errors: (none)
[2025-07-27 08:46:06] 2025-07-27 12:45:34,551 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 08:46:06] 2025-07-27 12:45:34,551 | INFO     | pilot state: finished 
[2025-07-27 08:46:06] 2025-07-27 12:45:34,551 | INFO     | transexitcode: 0
[2025-07-27 08:46:06] 2025-07-27 12:45:34,551 | INFO     | exeerrorcode: 0
[2025-07-27 08:46:06] 2025-07-27 12:45:34,552 | INFO     | exeerrordiag: 
[2025-07-27 08:46:06] 2025-07-27 12:45:34,552 | INFO     | exitcode: 0
[2025-07-27 08:46:06] 2025-07-27 12:45:34,552 | INFO     | exitmsg: OK
[2025-07-27 08:46:06] 2025-07-27 12:45:34,552 | INFO     | cpuconsumptiontime: 58545 s
[2025-07-27 08:46:06] 2025-07-27 12:45:34,552 | INFO     | nevents: 400
[2025-07-27 08:46:06] 2025-07-27 12:45:34,552 | INFO     | neventsw: 0
[2025-07-27 08:46:06] 2025-07-27 12:45:34,553 | INFO     | pid: 7867
[2025-07-27 08:46:06] 2025-07-27 12:45:34,553 | INFO     | pgrp: 7867
[2025-07-27 08:46:06] 2025-07-27 12:45:34,553 | INFO     | corecount: 12
[2025-07-27 08:46:06] 2025-07-27 12:45:34,553 | INFO     | event service: False
[2025-07-27 08:46:06] 2025-07-27 12:45:34,553 | INFO     | sizes: {0: 2397463, 5: 2397725, 11: 2397781, 5411: 2424382, 5412: 2433380, 5416: 2433436, 5422: 2433758}
[2025-07-27 08:46:06] 2025-07-27 12:45:34,553 | INFO     | --------------------------------------------------
[2025-07-27 08:46:06] 2025-07-27 12:45:34,553 | INFO     | 
[2025-07-27 08:46:06] 2025-07-27 12:45:34,554 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 08:46:06] 2025-07-27 12:45:34,621 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 08:46:06] 2025-07-27 12:45:34,621 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 08:46:06] 2025-07-27 12:45:34,622 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 08:46:06] 2025-07-27 12:45:34,622 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 08:46:06] 2025-07-27 12:45:34,622 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 08:46:06] 2025-07-27 12:45:34,622 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 08:46:06] 2025-07-27 12:45:34,622 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 08:46:06] 2025-07-27 12:45:34,622 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 08:46:06] 2025-07-27 12:45:34,623 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 08:46:06] 2025-07-27 12:45:34,623 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 08:46:06] 2025-07-27 12:45:34,623 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 08:46:06] 2025-07-27 12:45:34,623 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 08:46:06] 2025-07-27 12:45:34,623 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 08:46:06] 2025-07-27 12:45:34,623 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 08:46:06] 2025-07-27 12:45:34,624 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 08:46:06] 2025-07-27 12:45:34,624 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 08:46:06] 2025-07-27 12:45:34,624 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 08:46:06] 2025-07-27 12:45:34,624 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 08:46:06] 2025-07-27 12:45:34,624 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 08:46:06] 2025-07-27 12:45:34,624 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 08:46:06] 2025-07-27 12:45:34,625 | INFO     | job 6746209483 has completed (purged errors)
[2025-07-27 08:46:06] 2025-07-27 12:45:34,625 | INFO     | overall cleanup function is called
[2025-07-27 08:46:06] 2025-07-27 12:45:35,633 | INFO     | --- collectZombieJob: --- 10, [7867]
[2025-07-27 08:46:06] 2025-07-27 12:45:35,633 | INFO     | zombie collector waiting for pid 7867
[2025-07-27 08:46:06] 2025-07-27 12:45:35,634 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 08:46:06] 2025-07-27 12:45:35,634 | INFO     | collected zombie processes
[2025-07-27 08:46:06] 2025-07-27 12:45:35,634 | INFO     | will attempt to kill all subprocesses of pid=7867
[2025-07-27 08:46:06] 2025-07-27 12:45:35,727 | INFO     | process IDs to be killed: [7867] (in reverse order)
[2025-07-27 08:46:06] 2025-07-27 12:45:35,779 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 08:46:06] 2025-07-27 12:45:35,780 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 08:46:06] 2025-07-27 12:45:35,783 | INFO     | did not find any defunct processes belonging to 7867
[2025-07-27 08:46:06] 2025-07-27 12:45:35,787 | INFO     | did not find any defunct processes belonging to 7867
[2025-07-27 08:46:06] 2025-07-27 12:45:35,787 | INFO     | ready for new job
[2025-07-27 08:46:06] 2025-07-27 12:45:35,787 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 08:46:06] 2025-07-27 12:45:35,788 | INFO     | ***************************************
[2025-07-27 08:46:06] 2025-07-27 12:45:35,789 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 08:46:06] 2025-07-27 12:45:35,789 | INFO     | ***************************************
[2025-07-27 08:46:06] 2025-07-27 12:45:35,789 | INFO     | 
[2025-07-27 08:46:06] 2025-07-27 12:45:35,789 | INFO     | architecture information:
[2025-07-27 08:46:06] 2025-07-27 12:45:35,790 | INFO     | executing command: cat /etc/os-release
[2025-07-27 08:46:06] 2025-07-27 12:45:35,804 | INFO     | cat /etc/os-release:
[2025-07-27 08:46:06] NAME="CentOS Linux"
[2025-07-27 08:46:06] VERSION="7 (Core)"
[2025-07-27 08:46:06] ID="centos"
[2025-07-27 08:46:06] ID_LIKE="rhel fedora"
[2025-07-27 08:46:06] VERSION_ID="7"
[2025-07-27 08:46:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 08:46:06] ANSI_COLOR="0;31"
[2025-07-27 08:46:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 08:46:06] HOME_URL="https://www.centos.org/"
[2025-07-27 08:46:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 08:46:06] 
[2025-07-27 08:46:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 08:46:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 08:46:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 08:46:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 08:46:06] 
[2025-07-27 08:46:06] 2025-07-27 12:45:35,804 | INFO     | ***************************************
[2025-07-27 08:46:06] 2025-07-27 12:45:36,308 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 08:46:06] 2025-07-27 12:45:36,324 | INFO     | sufficient remaining disk space (29355933696 B)
[2025-07-27 08:46:06] 2025-07-27 12:45:36,325 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 08:46:06] 2025-07-27 12:45:36,325 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 08:46:06] 2025-07-27 12:45:36,325 | INFO     | update_server=False
[2025-07-27 08:46:06] 2025-07-27 12:45:36,325 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 08:46:06] 2025-07-27 12:45:36,325 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 08:46:06] 2025-07-27 12:45:36,326 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 08:46:06] 2025-07-27 12:45:36,326 | INFO     | aborting loop
[2025-07-27 08:46:06] 2025-07-27 12:45:36,326 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 08:46:06] 2025-07-27 12:45:37,053 | INFO     | all payload control threads have been joined
[2025-07-27 08:46:06] 2025-07-27 12:45:37,190 | INFO     | all data control threads have been joined
[2025-07-27 08:46:06] 2025-07-27 12:45:37,331 | INFO     | [job] retrieve thread has finished
[2025-07-27 08:46:06] 2025-07-27 12:45:37,331 | INFO     | [job] job monitor thread has finished
[2025-07-27 08:46:06] 2025-07-27 12:45:37,332 | INFO     | [job] queue monitor thread has finished
[2025-07-27 08:46:06] 2025-07-27 12:45:37,389 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 08:46:06] 2025-07-27 12:45:37,400 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 08:46:06] 2025-07-27 12:45:37,400 | INFO     | [job] validate thread has finished
[2025-07-27 08:46:06] 2025-07-27 12:45:37,503 | INFO     | all job control threads have been joined
[2025-07-27 08:46:06] 2025-07-27 12:45:37,871 | INFO     | [payload] validate_post thread has finished
[2025-07-27 08:46:06] 2025-07-27 12:45:37,988 | INFO     | [data] copytool_in thread has finished
[2025-07-27 08:46:06] 2025-07-27 12:45:38,039 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 08:46:06] 2025-07-27 12:45:38,058 | INFO     | [payload] control thread has finished
[2025-07-27 08:46:06] 2025-07-27 12:45:38,196 | INFO     | [data] control thread has finished
[2025-07-27 08:46:06] 2025-07-27 12:45:38,331 | INFO     | [data] copytool_out thread has finished
[2025-07-27 08:46:06] 2025-07-27 12:45:38,509 | INFO     | [job] control thread has finished
[2025-07-27 08:46:06] 2025-07-27 12:45:38,912 | INFO     | [payload] failed_post thread has finished
[2025-07-27 08:46:06] 2025-07-27 12:45:38,986 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 08:46:06] 2025-07-27 12:45:42,988 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 08:46:06] 2025-07-27 12:45:47,148 | INFO     | job.realtimelogging is not enabled
[2025-07-27 08:46:06] 2025-07-27 12:45:48,153 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 08:46:06] 2025-07-27 12:45:50,147 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140697629251392)>', '<ExcThread(monitor, started 140697197856512)>']
[2025-07-27 08:46:06] 2025-07-27 12:45:55,150 | INFO     | all workflow threads have been joined
[2025-07-27 08:46:06] 2025-07-27 12:45:55,150 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 08:46:06] 2025-07-27 12:45:55,150 | INFO     | traces error code: 0
[2025-07-27 08:46:06] 2025-07-27 12:45:55,151 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 08:46:06] 2025-07-27 12:46:06,064 | INFO     | PID=1121 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-07-27 08:46:06] 2025-07-27 12:46:06,065 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 08:46:06] 2025-07-27 12:46:06,065 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 08:46:06] 2025-07-27 12:46:06,065 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 08:46:06] 2025-07-27 12:46:06,065 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 08:46:06] 2025-07-27 12:46:06,065 | CRITICAL | thread 'MainThread' is not alive
[2025-07-27 08:46:06] 2025-07-27 12:46:06,065 | INFO     | [monitor] control thread has ended
[2025-07-27 08:46:06] 2025-07-27 12:46:06,159 [wrapper] ==== pilot stdout END ====
[2025-07-27 08:46:06] 2025-07-27 12:46:06,163 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 08:46:06] 2025-07-27 12:46:06,166 [wrapper] pilotpid: 1121
[2025-07-27 08:46:06] 2025-07-27 12:46:06,170 [wrapper] Pilot exit status: 0
[2025-07-27 08:46:06] 2025-07-27 12:46:06,185 [wrapper] pandaids: 6746209483
[2025-07-27 08:46:06] 2025-07-27 12:46:06,222 [wrapper] cleanup supervisor_pilot 26068 1122
[2025-07-27 08:46:06] 2025-07-27 12:46:06,226 [wrapper] Test setup, not cleaning
[2025-07-27 08:46:06] 2025-07-27 12:46:06,230 [wrapper] apfmon messages muted
[2025-07-27 08:46:06] 2025-07-27 12:46:06,233 [wrapper] ==== wrapper stdout END ====
[2025-07-27 08:46:06] 2025-07-27 12:46:06,237 [wrapper] ==== wrapper stderr END ====
[2025-07-27 08:46:06]  *** Error codes and diagnostics ***
[2025-07-27 08:46:06]     "exeErrorCode": 0,
[2025-07-27 08:46:06]     "exeErrorDiag": "",
[2025-07-27 08:46:06]     "pilotErrorCode": 0,
[2025-07-27 08:46:06]     "pilotErrorDiag": "",
[2025-07-27 08:46:06]  *** Listing of results directory ***
[2025-07-27 08:46:06] total 415008
[2025-07-27 08:46:06] -rw-r--r-- 1 boincer umatlas    530466 Jul 27 01:42 pilot3.tar.gz
[2025-07-27 08:46:06] -rw-r--r-- 1 boincer umatlas      5112 Jul 27 02:07 queuedata.json
[2025-07-27 08:46:06] -rwx------ 1 boincer umatlas     36292 Jul 27 02:07 runpilot2-wrapper.sh
[2025-07-27 08:46:06] -rw-r--r-- 1 boincer umatlas       100 Jul 27 07:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 08:46:06] -rwxr-xr-x 1 boincer umatlas      7986 Jul 27 07:14 run_atlas
[2025-07-27 08:46:06] -rw-r--r-- 1 boincer umatlas       105 Jul 27 07:14 job.xml
[2025-07-27 08:46:06] -rw-r--r-- 2 boincer umatlas 241534575 Jul 27 07:14 EVNT.45759511._000004.pool.root.1
[2025-07-27 08:46:06] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 07:14 start_atlas.sh
[2025-07-27 08:46:06] drwxrwx--x 2 boincer umatlas      4096 Jul 27 07:14 shared
[2025-07-27 08:46:06] -rw-r--r-- 2 boincer umatlas    542881 Jul 27 07:14 input.tar.gz
[2025-07-27 08:46:06] -rw-r--r-- 1 boincer umatlas         0 Jul 27 07:14 boinc_lockfile
[2025-07-27 08:46:06] -rw-r--r-- 1 boincer umatlas      2556 Jul 27 07:14 pandaJob.out
[2025-07-27 08:46:06] -rw------- 1 boincer umatlas    980117 Jul 27 07:14 agis_schedconf.cvmfs.json
[2025-07-27 08:46:06] -rw------- 1 boincer umatlas   1593052 Jul 27 07:14 agis_ddmendpoints.agis.ALL.json
[2025-07-27 08:46:06] drwx------ 4 boincer umatlas      4096 Jul 27 07:14 pilot3
[2025-07-27 08:46:06] -rw-r--r-- 1 boincer umatlas      5867 Jul 27 08:38 init_data.xml
[2025-07-27 08:46:06] -rw------- 1 boincer umatlas 177815080 Jul 27 08:44 HITS.45759518._000080.pool.root.1
[2025-07-27 08:46:06] -rw-r--r-- 1 boincer umatlas       529 Jul 27 08:45 boinc_task_state.xml
[2025-07-27 08:46:06] -rw------- 1 boincer umatlas      1048 Jul 27 08:45 memory_monitor_summary.json
[2025-07-27 08:46:06] -rw------- 1 boincer umatlas    360866 Jul 27 08:45 log.45759518._000080.job.log.tgz.1
[2025-07-27 08:46:06] -rw------- 1 boincer umatlas      7836 Jul 27 08:45 heartbeat.json
[2025-07-27 08:46:06] -rw-r--r-- 1 boincer umatlas        27 Jul 27 08:45 wrapper_checkpoint.txt
[2025-07-27 08:46:06] -rw-r--r-- 1 boincer umatlas      8192 Jul 27 08:45 boinc_mmap_file
[2025-07-27 08:46:06] -rw------- 1 boincer umatlas        95 Jul 27 08:46 pilot_heartbeat.json
[2025-07-27 08:46:06] -rw------- 1 boincer umatlas       814 Jul 27 08:46 pilotlog.txt
[2025-07-27 08:46:06] -rw------- 1 boincer umatlas    510146 Jul 27 08:46 log.45759518._000080.job.log.1
[2025-07-27 08:46:06] -rw------- 1 boincer umatlas       357 Jul 27 08:46 output.list
[2025-07-27 08:46:06] -rw-r--r-- 1 boincer umatlas       620 Jul 27 08:46 runtime_log
[2025-07-27 08:46:06] -rw------- 1 boincer umatlas    890880 Jul 27 08:46 result.tar.gz
[2025-07-27 08:46:06] -rw------- 1 boincer umatlas       658 Jul 27 08:46 tO1MDm1i9z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm7SULDmTjOYHn.diag
[2025-07-27 08:46:06] -rw-r--r-- 1 boincer umatlas      8657 Jul 27 08:46 runtime_log.err
[2025-07-27 08:46:06] -rw-r--r-- 1 boincer umatlas     21613 Jul 27 08:46 stderr.txt
[2025-07-27 08:46:06] HITS file was successfully produced:
[2025-07-27 08:46:06] -rw------- 1 boincer umatlas 177815080 Jul 27 08:44 shared/HITS.pool.root.1
[2025-07-27 08:46:06]  *** Contents of shared directory: ***
[2025-07-27 08:46:06] total 410948
[2025-07-27 08:46:06] -rw-r--r-- 2 boincer umatlas 241534575 Jul 27 07:14 ATLAS.root_0
[2025-07-27 08:46:06] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 07:14 start_atlas.sh
[2025-07-27 08:46:06] -rw-r--r-- 2 boincer umatlas    542881 Jul 27 07:14 input.tar.gz
[2025-07-27 08:46:06] -rw------- 1 boincer umatlas 177815080 Jul 27 08:44 HITS.pool.root.1
[2025-07-27 08:46:06] -rw------- 1 boincer umatlas    890880 Jul 27 08:46 result.tar.gz
08:46:07 (29974): run_atlas exited; CPU time 58527.247388
08:46:07 (29974): called boinc_finish(0)

</stderr_txt>
]]>

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