Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:45:17 (1338659): wrapper (7.7.26015): starting
08:45:17 (1338659): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 08:45:17] Arguments: --nthreads 12
[2025-07-27 08:45:17] Threads: 12
[2025-07-27 08:45:17] Checking for CVMFS
[2025-07-27 08:45:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 08:45:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 08:45:17] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 08:45:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 08:45:17] 2.12.6.0 1267368 18378 335884 148812 0 337 20585354 32935937 8347 16776704 0 34108209 99.698 64484691 29461 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 08:45:17] CVMFS is ok
[2025-07-27 08:45:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 08:45:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 08:45:17] Further information can be found at the LHC@home message board.
[2025-07-27 08:45:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 08:45:17] Checking for apptainer binary...
[2025-07-27 08:45:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 08:45:17] Running /usr/bin/apptainer --version
[2025-07-27 08:45:17] apptainer version 1.4.1-1.el9
[2025-07-27 08:45:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 08:45:18] c6-2-29-3.aglt2.org
[2025-07-27 08:45:18] apptainer works
[2025-07-27 08:45:18] Set ATHENA_PROC_NUMBER=12
[2025-07-27 08:45:18] Set ATHENA_CORE_NUMBER=12
[2025-07-27 08:45:18] Starting ATLAS job with PandaID=6746200060
[2025-07-27 08:45:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 10:09:45]  *** The last 200 lines of the pilot log: ***
[2025-07-27 10:09:45]  lfn=log.45759456._000023.job.log.tgz.1
[2025-07-27 10:09:45]  mtime=0
[2025-07-27 10:09:45]  protocol_id=None
[2025-07-27 10:09:45]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 10:09:45]  replicas=None
[2025-07-27 10:09:45]  scope=mc23_13p6TeV
[2025-07-27 10:09:45]  status=None
[2025-07-27 10:09:45]  status_code=0
[2025-07-27 10:09:45]  storage_token=
[2025-07-27 10:09:45]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6746200060/log.45759456._000023.job.log.tgz.1
[2025-07-27 10:09:45]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3c/44/log.45759456._000023.job.log.tgz.1
[2025-07-27 10:09:45]  workdir=None
[2025-07-27 10:09:45] ]
[2025-07-27 10:09:45] 2025-07-27 14:09:04,863 | INFO     | transferring file log.45759456._000023.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6746200060/log.45759456._000023.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 10:09:45] 2025-07-27 14:09:04,863 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6746200060/log.45759456._000023.job.log.tgz.1 /tmp/boinchome/slots/0/log.45759456._000023.job
[2025-07-27 10:09:45] 2025-07-27 14:09:04,882 | INFO     | adding to output.list: log.45759456._000023.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3c/44/log.45759456._000023.job.log.tg
[2025-07-27 10:09:45] 2025-07-27 14:09:04,883 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 10:09:45] 2025-07-27 14:09:04,883 | INFO     | summary of transferred files:
[2025-07-27 10:09:45] 2025-07-27 14:09:04,884 | INFO     |  -- lfn=log.45759456._000023.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 10:09:45] 2025-07-27 14:09:04,884 | INFO     | stage-out finished correctly
[2025-07-27 10:09:45] 2025-07-27 14:09:05,825 | INFO     | monitor loop #354: job 0:6746200060 is in state 'finished'
[2025-07-27 10:09:45] 2025-07-27 14:09:05,825 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 10:09:45] 2025-07-27 14:09:07,068 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 10:09:45] 2025-07-27 14:09:07,178 | INFO     | job 6746200060 has state=finished
[2025-07-27 10:09:45] 2025-07-27 14:09:07,178 | INFO     | preparing for final server update for job 6746200060 in state='finished'
[2025-07-27 10:09:45] 2025-07-27 14:09:07,179 | INFO     | this job has now completed (state=finished)
[2025-07-27 10:09:45] 2025-07-27 14:09:07,179 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 10:09:45] 2025-07-27 14:09:07,179 | INFO     | log transfer has been attempted: DONE
[2025-07-27 10:09:45] 2025-07-27 14:09:07,180 | INFO     | job 6746200060 has finished - writing final server update
[2025-07-27 10:09:45] 2025-07-27 14:09:07,180 | INFO     | total number of processed events: 400 (read)
[2025-07-27 10:09:45] 2025-07-27 14:09:07,181 | INFO     | executing command: lscpu
[2025-07-27 10:09:45] 2025-07-27 14:09:07,243 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 10:09:45] 2025-07-27 14:09:08,328 | INFO     | monitor loop #355: job 0:6746200060 is in state 'finished'
[2025-07-27 10:09:45] 2025-07-27 14:09:08,329 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 10:09:45] 2025-07-27 14:09:09,814 | INFO     | 5021s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-07-27 10:09:45] 2025-07-27 14:09:10,831 | INFO     | monitor loop #356: job 0:6746200060 is in state 'finished'
[2025-07-27 10:09:45] 2025-07-27 14:09:10,832 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 10:09:45] 2025-07-27 14:09:12,515 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 10:09:45] 2025-07-27 14:09:12,519 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2576.7548749999996
[2025-07-27 10:09:45] 2025-07-27 14:09:12,527 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6746200060/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 10:09:45] 2025-07-27 14:09:12,528 | INFO     | extracted standard info from prmon json
[2025-07-27 10:09:45] 2025-07-27 14:09:12,528 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 10:09:45] 2025-07-27 14:09:12,528 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 10:09:45] 2025-07-27 14:09:12,529 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 10:09:45] 2025-07-27 14:09:12,529 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 10:09:45] 2025-07-27 14:09:12,530 | INFO     | fitting pss+swap vs Time
[2025-07-27 10:09:45] 2025-07-27 14:09:12,531 | INFO     | sum of square deviations: 130793150.0
[2025-07-27 10:09:45] 2025-07-27 14:09:12,531 | INFO     | sum of deviations: -13323992222.0
[2025-07-27 10:09:45] 2025-07-27 14:09:12,531 | INFO     | mean x: 1753622925.0
[2025-07-27 10:09:45] 2025-07-27 14:09:12,531 | INFO     | mean y: 2553562.84
[2025-07-27 10:09:45] 2025-07-27 14:09:12,531 | INFO     | -- intersect: 178645381669.82333
[2025-07-27 10:09:45] 2025-07-27 14:09:12,531 | INFO     | intersect: 178645381669.82333
[2025-07-27 10:09:45] 2025-07-27 14:09:12,532 | INFO     | chi2: 0.2241727275159923
[2025-07-27 10:09:45] 2025-07-27 14:09:12,532 | INFO     | -- intersect: 178645381669.82333
[2025-07-27 10:09:45] 2025-07-27 14:09:12,532 | INFO     | current memory leak: -101.87 B/s (using 75 data points, chi2=0.22)
[2025-07-27 10:09:45] 2025-07-27 14:09:12,532 | INFO     | could have reported an average CPU frequency of 2618 MHz (6 samples)
[2025-07-27 10:09:45] 2025-07-27 14:09:12,532 | INFO     | ..............................
[2025-07-27 10:09:45] 2025-07-27 14:09:12,533 | INFO     | . Timing measurements:
[2025-07-27 10:09:45] 2025-07-27 14:09:12,533 | INFO     | . get job = 0 s
[2025-07-27 10:09:45] 2025-07-27 14:09:12,533 | INFO     | . initial setup = 3 s
[2025-07-27 10:09:45] 2025-07-27 14:09:12,533 | INFO     | . payload setup = 8 s
[2025-07-27 10:09:45] 2025-07-27 14:09:12,533 | INFO     | . stage-in = 0 s
[2025-07-27 10:09:45] 2025-07-27 14:09:12,533 | INFO     | . payload execution = 4981 s
[2025-07-27 10:09:45] 2025-07-27 14:09:12,533 | INFO     | . stage-out = 1 s
[2025-07-27 10:09:45] 2025-07-27 14:09:12,533 | INFO     | . log creation = 0 s
[2025-07-27 10:09:45] 2025-07-27 14:09:12,533 | INFO     | ..............................
[2025-07-27 10:09:45] 2025-07-27 14:09:12,617 | INFO     | 
[2025-07-27 10:09:45] 2025-07-27 14:09:12,617 | INFO     | job summary report
[2025-07-27 10:09:45] 2025-07-27 14:09:12,617 | INFO     | --------------------------------------------------
[2025-07-27 10:09:45] 2025-07-27 14:09:12,617 | INFO     | PanDA job id: 6746200060
[2025-07-27 10:09:45] 2025-07-27 14:09:12,617 | INFO     | task id: 45759456
[2025-07-27 10:09:45] 2025-07-27 14:09:12,617 | INFO     | errors: (none)
[2025-07-27 10:09:45] 2025-07-27 14:09:12,617 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 10:09:45] 2025-07-27 14:09:12,617 | INFO     | pilot state: finished 
[2025-07-27 10:09:45] 2025-07-27 14:09:12,617 | INFO     | transexitcode: 0
[2025-07-27 10:09:45] 2025-07-27 14:09:12,617 | INFO     | exeerrorcode: 0
[2025-07-27 10:09:45] 2025-07-27 14:09:12,617 | INFO     | exeerrordiag: 
[2025-07-27 10:09:45] 2025-07-27 14:09:12,617 | INFO     | exitcode: 0
[2025-07-27 10:09:45] 2025-07-27 14:09:12,618 | INFO     | exitmsg: OK
[2025-07-27 10:09:45] 2025-07-27 14:09:12,618 | INFO     | cpuconsumptiontime: 52168 s
[2025-07-27 10:09:45] 2025-07-27 14:09:12,618 | INFO     | nevents: 400
[2025-07-27 10:09:45] 2025-07-27 14:09:12,618 | INFO     | neventsw: 0
[2025-07-27 10:09:45] 2025-07-27 14:09:12,618 | INFO     | pid: 1352502
[2025-07-27 10:09:45] 2025-07-27 14:09:12,618 | INFO     | pgrp: 1352502
[2025-07-27 10:09:45] 2025-07-27 14:09:12,618 | INFO     | corecount: 12
[2025-07-27 10:09:45] 2025-07-27 14:09:12,618 | INFO     | event service: False
[2025-07-27 10:09:45] 2025-07-27 14:09:12,618 | INFO     | sizes: {0: 2397353, 1: 2397495, 6: 2397757, 11: 2397785, 4993: 2424024, 4996: 2433022, 4998: 2433206, 5004: 2433400}
[2025-07-27 10:09:45] 2025-07-27 14:09:12,618 | INFO     | --------------------------------------------------
[2025-07-27 10:09:45] 2025-07-27 14:09:12,618 | INFO     | 
[2025-07-27 10:09:45] 2025-07-27 14:09:12,618 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 10:09:45] 2025-07-27 14:09:12,644 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 10:09:45] 2025-07-27 14:09:12,645 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 10:09:45] 2025-07-27 14:09:12,645 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 10:09:45] 2025-07-27 14:09:12,645 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 10:09:45] 2025-07-27 14:09:12,645 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 10:09:45] 2025-07-27 14:09:12,645 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 10:09:45] 2025-07-27 14:09:12,645 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 10:09:45] 2025-07-27 14:09:12,645 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 10:09:45] 2025-07-27 14:09:12,645 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 10:09:45] 2025-07-27 14:09:12,645 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 10:09:45] 2025-07-27 14:09:12,645 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 10:09:45] 2025-07-27 14:09:12,645 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 10:09:45] 2025-07-27 14:09:12,646 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 10:09:45] 2025-07-27 14:09:12,646 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 10:09:45] 2025-07-27 14:09:12,646 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 10:09:45] 2025-07-27 14:09:12,646 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 10:09:45] 2025-07-27 14:09:12,646 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 10:09:45] 2025-07-27 14:09:12,646 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 10:09:45] 2025-07-27 14:09:12,646 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 10:09:45] 2025-07-27 14:09:12,646 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 10:09:45] 2025-07-27 14:09:12,646 | INFO     | job 6746200060 has completed (purged errors)
[2025-07-27 10:09:45] 2025-07-27 14:09:12,646 | INFO     | overall cleanup function is called
[2025-07-27 10:09:45] 2025-07-27 14:09:13,656 | INFO     | --- collectZombieJob: --- 10, [1352502]
[2025-07-27 10:09:45] 2025-07-27 14:09:13,656 | INFO     | zombie collector waiting for pid 1352502
[2025-07-27 10:09:45] 2025-07-27 14:09:13,656 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 10:09:45] 2025-07-27 14:09:13,656 | INFO     | collected zombie processes
[2025-07-27 10:09:45] 2025-07-27 14:09:13,656 | INFO     | will attempt to kill all subprocesses of pid=1352502
[2025-07-27 10:09:45] 2025-07-27 14:09:14,003 | INFO     | process IDs to be killed: [1352502] (in reverse order)
[2025-07-27 10:09:45] 2025-07-27 14:09:14,136 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 10:09:45] 2025-07-27 14:09:14,136 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 10:09:45] 2025-07-27 14:09:14,146 | INFO     | did not find any defunct processes belonging to 1352502
[2025-07-27 10:09:45] 2025-07-27 14:09:14,158 | INFO     | did not find any defunct processes belonging to 1352502
[2025-07-27 10:09:45] 2025-07-27 14:09:14,159 | INFO     | ready for new job
[2025-07-27 10:09:45] 2025-07-27 14:09:14,159 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 10:09:45] 2025-07-27 14:09:14,161 | INFO     | ***************************************
[2025-07-27 10:09:45] 2025-07-27 14:09:14,161 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 10:09:45] 2025-07-27 14:09:14,161 | INFO     | ***************************************
[2025-07-27 10:09:45] 2025-07-27 14:09:14,161 | INFO     | 
[2025-07-27 10:09:45] 2025-07-27 14:09:14,177 | INFO     | architecture information:
[2025-07-27 10:09:45] 2025-07-27 14:09:14,178 | INFO     | executing command: cat /etc/os-release
[2025-07-27 10:09:45] 2025-07-27 14:09:14,194 | INFO     | cat /etc/os-release:
[2025-07-27 10:09:45] NAME="CentOS Linux"
[2025-07-27 10:09:45] VERSION="7 (Core)"
[2025-07-27 10:09:45] ID="centos"
[2025-07-27 10:09:45] ID_LIKE="rhel fedora"
[2025-07-27 10:09:45] VERSION_ID="7"
[2025-07-27 10:09:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 10:09:45] ANSI_COLOR="0;31"
[2025-07-27 10:09:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 10:09:45] HOME_URL="https://www.centos.org/"
[2025-07-27 10:09:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 10:09:45] 
[2025-07-27 10:09:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 10:09:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 10:09:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 10:09:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 10:09:45] 
[2025-07-27 10:09:45] 2025-07-27 14:09:14,194 | INFO     | ***************************************
[2025-07-27 10:09:45] 2025-07-27 14:09:14,697 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 10:09:45] 2025-07-27 14:09:14,722 | INFO     | sufficient remaining disk space (76382470144 B)
[2025-07-27 10:09:45] 2025-07-27 14:09:14,722 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 10:09:45] 2025-07-27 14:09:14,722 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 10:09:45] 2025-07-27 14:09:14,723 | INFO     | update_server=False
[2025-07-27 10:09:45] 2025-07-27 14:09:14,723 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 10:09:45] 2025-07-27 14:09:14,723 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 10:09:45] 2025-07-27 14:09:14,723 | INFO     | aborting loop
[2025-07-27 10:09:45] 2025-07-27 14:09:15,405 | INFO     | all data control threads have been joined
[2025-07-27 10:09:45] 2025-07-27 14:09:15,473 | INFO     | all payload control threads have been joined
[2025-07-27 10:09:45] 2025-07-27 14:09:15,481 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 10:09:45] 2025-07-27 14:09:15,598 | INFO     | all job control threads have been joined
[2025-07-27 10:09:45] 2025-07-27 14:09:15,729 | INFO     | [job] retrieve thread has finished
[2025-07-27 10:09:45] 2025-07-27 14:09:15,729 | INFO     | [job] job monitor thread has finished
[2025-07-27 10:09:45] 2025-07-27 14:09:15,760 | INFO     | [data] copytool_in thread has finished
[2025-07-27 10:09:45] 2025-07-27 14:09:15,901 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 10:09:45] 2025-07-27 14:09:16,125 | INFO     | [job] validate thread has finished
[2025-07-27 10:09:45] 2025-07-27 14:09:16,155 | INFO     | [payload] validate_post thread has finished
[2025-07-27 10:09:45] 2025-07-27 14:09:16,361 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 10:09:45] 2025-07-27 14:09:16,410 | INFO     | [data] control thread has finished
[2025-07-27 10:09:45] 2025-07-27 14:09:16,478 | INFO     | [payload] control thread has finished
[2025-07-27 10:09:45] 2025-07-27 14:09:16,592 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 10:09:45] 2025-07-27 14:09:16,604 | INFO     | [job] control thread has finished
[2025-07-27 10:09:45] 2025-07-27 14:09:16,773 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 10:09:45] 2025-07-27 14:09:16,843 | INFO     | [payload] failed_post thread has finished
[2025-07-27 10:09:45] 2025-07-27 14:09:17,487 | INFO     | [data] copytool_out thread has finished
[2025-07-27 10:09:45] 2025-07-27 14:09:17,627 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 10:09:45] 2025-07-27 14:09:17,690 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 10:09:45] 2025-07-27 14:09:18,632 | INFO     | [job] queue monitor thread has finished
[2025-07-27 10:09:45] 2025-07-27 14:09:21,696 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 10:09:45] 2025-07-27 14:09:22,729 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139854805317440)>', '<ExcThread(monitor, started 139854285346560)>']
[2025-07-27 10:09:45] 2025-07-27 14:09:27,754 | INFO     | all workflow threads have been joined
[2025-07-27 10:09:45] 2025-07-27 14:09:27,755 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 10:09:45] 2025-07-27 14:09:27,755 | INFO     | traces error code: 0
[2025-07-27 10:09:45] 2025-07-27 14:09:27,756 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 10:09:45] 2025-07-27 14:09:45,413 | INFO     | PID=1342386 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 10:09:45] 2025-07-27 14:09:45,413 | INFO     | .. there are 10 such processes running
[2025-07-27 10:09:45] 2025-07-27 14:09:45,414 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 10:09:45] 2025-07-27 14:09:45,414 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 10:09:45] 2025-07-27 14:09:45,414 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 10:09:45] 2025-07-27 14:09:45,414 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 10:09:45] 2025-07-27 14:09:45,414 | INFO     | [monitor] control thread has ended
[2025-07-27 10:09:45] 2025-07-27 14:09:45,594 [wrapper] ==== pilot stdout END ====
[2025-07-27 10:09:45] 2025-07-27 14:09:45,597 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 10:09:45] 2025-07-27 14:09:45,601 [wrapper] pilotpid: 1342386
[2025-07-27 10:09:45] 2025-07-27 14:09:45,604 [wrapper] Pilot exit status: 0
[2025-07-27 10:09:45] 2025-07-27 14:09:45,621 [wrapper] pandaids: 6746200060
[2025-07-27 10:09:45] 2025-07-27 14:09:45,690 [wrapper] cleanup supervisor_pilot 1639994 1342387
[2025-07-27 10:09:45] 2025-07-27 14:09:45,694 [wrapper] Test setup, not cleaning
[2025-07-27 10:09:45] 2025-07-27 14:09:45,699 [wrapper] apfmon messages muted
[2025-07-27 10:09:45] 2025-07-27 14:09:45,703 [wrapper] ==== wrapper stdout END ====
[2025-07-27 10:09:45] 2025-07-27 14:09:45,707 [wrapper] ==== wrapper stderr END ====
[2025-07-27 10:09:45]  *** Error codes and diagnostics ***
[2025-07-27 10:09:45]     "exeErrorCode": 0,
[2025-07-27 10:09:45]     "exeErrorDiag": "",
[2025-07-27 10:09:45]     "pilotErrorCode": 0,
[2025-07-27 10:09:45]     "pilotErrorDiag": "",
[2025-07-27 10:09:45]  *** Listing of results directory ***
[2025-07-27 10:09:45] total 409512
[2025-07-27 10:09:45] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 01:42 pilot3.tar.gz
[2025-07-27 10:09:45] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 01:54 queuedata.json
[2025-07-27 10:09:45] -rwx------. 1 boincer umatlas     36292 Jul 27 01:55 runpilot2-wrapper.sh
[2025-07-27 10:09:45] -rw-r--r--. 1 boincer umatlas       100 Jul 27 08:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 10:09:45] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 08:45 run_atlas
[2025-07-27 10:09:45] -rw-r--r--. 1 boincer umatlas       105 Jul 27 08:45 job.xml
[2025-07-27 10:09:45] -rw-r--r--. 2 boincer umatlas 244524377 Jul 27 08:45 EVNT.45759449._000001.pool.root.1
[2025-07-27 10:09:45] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 08:45 start_atlas.sh
[2025-07-27 10:09:45] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 08:45 shared
[2025-07-27 10:09:45] -rw-r--r--. 2 boincer umatlas    542874 Jul 27 08:45 input.tar.gz
[2025-07-27 10:09:45] -rw-r--r--. 1 boincer umatlas         0 Jul 27 08:45 boinc_lockfile
[2025-07-27 10:09:45] -rw-r--r--. 1 boincer umatlas      2561 Jul 27 08:45 pandaJob.out
[2025-07-27 10:09:45] -rw-------. 1 boincer umatlas    980117 Jul 27 08:45 agis_schedconf.cvmfs.json
[2025-07-27 10:09:45] -rw-------. 1 boincer umatlas   1593052 Jul 27 08:45 agis_ddmendpoints.agis.ALL.json
[2025-07-27 10:09:45] drwx------. 4 boincer umatlas      4096 Jul 27 08:45 pilot3
[2025-07-27 10:09:45] -rw-r--r--. 1 boincer umatlas      6842 Jul 27 10:03 init_data.xml
[2025-07-27 10:09:45] -rw-------. 1 boincer umatlas 169220623 Jul 27 10:08 HITS.45759456._000023.pool.root.1
[2025-07-27 10:09:45] -rw-r--r--. 1 boincer umatlas       529 Jul 27 10:08 boinc_task_state.xml
[2025-07-27 10:09:45] -rw-------. 1 boincer umatlas      1036 Jul 27 10:08 memory_monitor_summary.json
[2025-07-27 10:09:45] -rw-------. 1 boincer umatlas        95 Jul 27 10:09 pilot_heartbeat.json
[2025-07-27 10:09:45] -rw-------. 1 boincer umatlas    380700 Jul 27 10:09 log.45759456._000023.job.log.tgz.1
[2025-07-27 10:09:45] -rw-------. 1 boincer umatlas      7814 Jul 27 10:09 heartbeat.json
[2025-07-27 10:09:45] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 10:09 boinc_mmap_file
[2025-07-27 10:09:45] -rw-r--r--. 1 boincer umatlas        27 Jul 27 10:09 wrapper_checkpoint.txt
[2025-07-27 10:09:45] -rw-------. 1 boincer umatlas       823 Jul 27 10:09 pilotlog.txt
[2025-07-27 10:09:45] -rw-------. 1 boincer umatlas    483219 Jul 27 10:09 log.45759456._000023.job.log.1
[2025-07-27 10:09:45] -rw-------. 1 boincer umatlas       357 Jul 27 10:09 output.list
[2025-07-27 10:09:45] -rw-r--r--. 1 boincer umatlas       620 Jul 27 10:09 runtime_log
[2025-07-27 10:09:45] -rw-------. 1 boincer umatlas    880640 Jul 27 10:09 result.tar.gz
[2025-07-27 10:09:45] -rw-------. 1 boincer umatlas       657 Jul 27 10:09 x15MDmwW9z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmbQULDmbxcMgm.diag
[2025-07-27 10:09:45] -rw-r--r--. 1 boincer umatlas      8667 Jul 27 10:09 runtime_log.err
[2025-07-27 10:09:45] -rw-r--r--. 1 boincer umatlas     21712 Jul 27 10:09 stderr.txt
[2025-07-27 10:09:45] HITS file was successfully produced:
[2025-07-27 10:09:45] -rw-------. 1 boincer umatlas 169220623 Jul 27 10:08 shared/HITS.pool.root.1
[2025-07-27 10:09:45]  *** Contents of shared directory: ***
[2025-07-27 10:09:45] total 405464
[2025-07-27 10:09:45] -rw-r--r--. 2 boincer umatlas 244524377 Jul 27 08:45 ATLAS.root_0
[2025-07-27 10:09:45] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 08:45 start_atlas.sh
[2025-07-27 10:09:45] -rw-r--r--. 2 boincer umatlas    542874 Jul 27 08:45 input.tar.gz
[2025-07-27 10:09:45] -rw-------. 1 boincer umatlas 169220623 Jul 27 10:08 HITS.pool.root.1
[2025-07-27 10:09:45] -rw-------. 1 boincer umatlas    880640 Jul 27 10:09 result.tar.gz
10:09:47 (1338659): run_atlas exited; CPU time 52296.506143
10:09:47 (1338659): called boinc_finish(0)

</stderr_txt>
]]>

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