Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:43:08 (2678216): wrapper (7.7.26015): starting
08:43:08 (2678216): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 08:43:08] Arguments: --nthreads 12
[2025-07-27 08:43:08] Threads: 12
[2025-07-27 08:43:08] Checking for CVMFS
[2025-07-27 08:43:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 08:43:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 08:43:09] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 08:43:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 08:43:09] 2.13.0.0 1190652 18379 339200 148812 1 333 30948680 32935937 7061 16776704 0 33384465 99.727 57229362 29265 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 08:43:09] CVMFS is ok
[2025-07-27 08:43:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 08:43:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 08:43:09] Further information can be found at the LHC@home message board.
[2025-07-27 08:43:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 08:43:09] Checking for apptainer binary...
[2025-07-27 08:43:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 08:43:09] Running /usr/bin/apptainer --version
[2025-07-27 08:43:09] apptainer version 1.4.1-1.el9
[2025-07-27 08:43:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 08:43:09] c6-1-26-3.aglt2.org
[2025-07-27 08:43:09] apptainer works
[2025-07-27 08:43:09] Set ATHENA_PROC_NUMBER=12
[2025-07-27 08:43:09] Set ATHENA_CORE_NUMBER=12
[2025-07-27 08:43:09] Starting ATLAS job with PandaID=6746137292
[2025-07-27 08:43:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 10:11:35]  *** The last 200 lines of the pilot log: ***
[2025-07-27 10:11:35]  mtime=0
[2025-07-27 10:11:35]  protocol_id=None
[2025-07-27 10:11:35]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 10:11:35]  replicas=None
[2025-07-27 10:11:35]  scope=mc23_13p6TeV
[2025-07-27 10:11:35]  status=None
[2025-07-27 10:11:35]  status_code=0
[2025-07-27 10:11:35]  storage_token=
[2025-07-27 10:11:35]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6746137292/log.45758383._000110.job.log.tgz.1
[2025-07-27 10:11:35]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cc/29/log.45758383._000110.job.log.tgz.1
[2025-07-27 10:11:35]  workdir=None
[2025-07-27 10:11:35] ]
[2025-07-27 10:11:35] 2025-07-27 14:10:54,673 | INFO     | transferring file log.45758383._000110.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6746137292/log.45758383._000110.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 10:11:35] 2025-07-27 14:10:54,673 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6746137292/log.45758383._000110.job.log.tgz.1 /tmp/boinchome/slots/0/log.45758383._000110.job
[2025-07-27 10:11:35] 2025-07-27 14:10:54,692 | INFO     | adding to output.list: log.45758383._000110.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cc/29/log.45758383._000110.job.log.tg
[2025-07-27 10:11:35] 2025-07-27 14:10:54,693 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 10:11:35] 2025-07-27 14:10:54,693 | INFO     | summary of transferred files:
[2025-07-27 10:11:35] 2025-07-27 14:10:54,693 | INFO     |  -- lfn=log.45758383._000110.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 10:11:35] 2025-07-27 14:10:54,693 | INFO     | stage-out finished correctly
[2025-07-27 10:11:35] 2025-07-27 14:10:55,761 | INFO     | monitor loop #389: job 0:6746137292 is in state 'finished'
[2025-07-27 10:11:35] 2025-07-27 14:10:55,762 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 10:11:35] 2025-07-27 14:10:57,261 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 10:11:35] 2025-07-27 14:10:58,265 | INFO     | monitor loop #390: job 0:6746137292 is in state 'finished'
[2025-07-27 10:11:35] 2025-07-27 14:10:58,265 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 10:11:35] 2025-07-27 14:10:58,268 | INFO     | job 6746137292 has state=finished
[2025-07-27 10:11:35] 2025-07-27 14:10:58,268 | INFO     | preparing for final server update for job 6746137292 in state='finished'
[2025-07-27 10:11:35] 2025-07-27 14:10:58,269 | INFO     | this job has now completed (state=finished)
[2025-07-27 10:11:35] 2025-07-27 14:10:58,269 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 10:11:35] 2025-07-27 14:10:58,269 | INFO     | log transfer has been attempted: DONE
[2025-07-27 10:11:35] 2025-07-27 14:10:58,269 | INFO     | job 6746137292 has finished - writing final server update
[2025-07-27 10:11:35] 2025-07-27 14:10:58,269 | INFO     | total number of processed events: 400 (read)
[2025-07-27 10:11:35] 2025-07-27 14:10:58,272 | INFO     | executing command: lscpu
[2025-07-27 10:11:35] 2025-07-27 14:10:58,338 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 10:11:35] 2025-07-27 14:11:00,768 | INFO     | monitor loop #391: job 0:6746137292 is in state 'finished'
[2025-07-27 10:11:35] 2025-07-27 14:11:00,768 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 10:11:35] 2025-07-27 14:11:03,271 | INFO     | monitor loop #392: job 0:6746137292 is in state 'finished'
[2025-07-27 10:11:35] 2025-07-27 14:11:03,271 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 10:11:35] 2025-07-27 14:11:03,643 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 10:11:35] 2025-07-27 14:11:03,659 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2657.4038571428573
[2025-07-27 10:11:35] 2025-07-27 14:11:03,670 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6746137292/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 10:11:35] 2025-07-27 14:11:03,672 | INFO     | extracted standard info from prmon json
[2025-07-27 10:11:35] 2025-07-27 14:11:03,672 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 10:11:35] 2025-07-27 14:11:03,672 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 10:11:35] 2025-07-27 14:11:03,672 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 10:11:35] 2025-07-27 14:11:03,673 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 10:11:35] 2025-07-27 14:11:03,675 | INFO     | fitting pss+swap vs Time
[2025-07-27 10:11:35] 2025-07-27 14:11:03,676 | INFO     | sum of square deviations: 152858680.0
[2025-07-27 10:11:35] 2025-07-27 14:11:03,676 | INFO     | sum of deviations: -12489490323.0
[2025-07-27 10:11:35] 2025-07-27 14:11:03,677 | INFO     | mean x: 1753622917.0
[2025-07-27 10:11:35] 2025-07-27 14:11:03,677 | INFO     | mean y: 2500088.430379747
[2025-07-27 10:11:35] 2025-07-27 14:11:03,677 | INFO     | -- intersect: 143284232287.49512
[2025-07-27 10:11:35] 2025-07-27 14:11:03,677 | INFO     | intersect: 143284232287.49512
[2025-07-27 10:11:35] 2025-07-27 14:11:03,677 | INFO     | chi2: 0.24085427976882803
[2025-07-27 10:11:35] 2025-07-27 14:11:03,677 | INFO     | -- intersect: 143284232287.49512
[2025-07-27 10:11:35] 2025-07-27 14:11:03,678 | INFO     | current memory leak: -81.71 B/s (using 79 data points, chi2=0.24)
[2025-07-27 10:11:35] 2025-07-27 14:11:03,678 | INFO     | could have reported an average CPU frequency of 2635 MHz (6 samples)
[2025-07-27 10:11:35] 2025-07-27 14:11:03,678 | INFO     | ..............................
[2025-07-27 10:11:35] 2025-07-27 14:11:03,678 | INFO     | . Timing measurements:
[2025-07-27 10:11:35] 2025-07-27 14:11:03,679 | INFO     | . get job = 0 s
[2025-07-27 10:11:35] 2025-07-27 14:11:03,679 | INFO     | . initial setup = 2 s
[2025-07-27 10:11:35] 2025-07-27 14:11:03,679 | INFO     | . payload setup = 8 s
[2025-07-27 10:11:35] 2025-07-27 14:11:03,679 | INFO     | . stage-in = 0 s
[2025-07-27 10:11:35] 2025-07-27 14:11:03,679 | INFO     | . payload execution = 5222 s
[2025-07-27 10:11:35] 2025-07-27 14:11:03,679 | INFO     | . stage-out = 0 s
[2025-07-27 10:11:35] 2025-07-27 14:11:03,679 | INFO     | . log creation = 0 s
[2025-07-27 10:11:35] 2025-07-27 14:11:03,679 | INFO     | ..............................
[2025-07-27 10:11:35] 2025-07-27 14:11:03,825 | INFO     | 
[2025-07-27 10:11:35] 2025-07-27 14:11:03,825 | INFO     | job summary report
[2025-07-27 10:11:35] 2025-07-27 14:11:03,825 | INFO     | --------------------------------------------------
[2025-07-27 10:11:35] 2025-07-27 14:11:03,826 | INFO     | PanDA job id: 6746137292
[2025-07-27 10:11:35] 2025-07-27 14:11:03,826 | INFO     | task id: 45758383
[2025-07-27 10:11:35] 2025-07-27 14:11:03,826 | INFO     | errors: (none)
[2025-07-27 10:11:35] 2025-07-27 14:11:03,826 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 10:11:35] 2025-07-27 14:11:03,826 | INFO     | pilot state: finished 
[2025-07-27 10:11:35] 2025-07-27 14:11:03,826 | INFO     | transexitcode: 0
[2025-07-27 10:11:35] 2025-07-27 14:11:03,826 | INFO     | exeerrorcode: 0
[2025-07-27 10:11:35] 2025-07-27 14:11:03,826 | INFO     | exeerrordiag: 
[2025-07-27 10:11:35] 2025-07-27 14:11:03,826 | INFO     | exitcode: 0
[2025-07-27 10:11:35] 2025-07-27 14:11:03,826 | INFO     | exitmsg: OK
[2025-07-27 10:11:35] 2025-07-27 14:11:03,827 | INFO     | cpuconsumptiontime: 56584 s
[2025-07-27 10:11:35] 2025-07-27 14:11:03,827 | INFO     | nevents: 400
[2025-07-27 10:11:35] 2025-07-27 14:11:03,827 | INFO     | neventsw: 0
[2025-07-27 10:11:35] 2025-07-27 14:11:03,827 | INFO     | pid: 2692396
[2025-07-27 10:11:35] 2025-07-27 14:11:03,827 | INFO     | pgrp: 2692396
[2025-07-27 10:11:35] 2025-07-27 14:11:03,827 | INFO     | corecount: 12
[2025-07-27 10:11:35] 2025-07-27 14:11:03,827 | INFO     | event service: False
[2025-07-27 10:11:35] 2025-07-27 14:11:03,827 | INFO     | sizes: {0: 2396635, 1: 2397491, 6: 2397753, 12: 2397781, 5234: 2424075, 5236: 2433073, 5238: 2433257, 5245: 2433451}
[2025-07-27 10:11:35] 2025-07-27 14:11:03,827 | INFO     | --------------------------------------------------
[2025-07-27 10:11:35] 2025-07-27 14:11:03,827 | INFO     | 
[2025-07-27 10:11:35] 2025-07-27 14:11:03,827 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 10:11:35] 2025-07-27 14:11:03,850 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 10:11:35] 2025-07-27 14:11:03,851 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 10:11:35] 2025-07-27 14:11:03,851 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 10:11:35] 2025-07-27 14:11:03,851 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 10:11:35] 2025-07-27 14:11:03,851 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 10:11:35] 2025-07-27 14:11:03,851 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 10:11:35] 2025-07-27 14:11:03,852 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 10:11:35] 2025-07-27 14:11:03,853 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 10:11:35] 2025-07-27 14:11:03,853 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 10:11:35] 2025-07-27 14:11:03,853 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 10:11:35] 2025-07-27 14:11:03,853 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 10:11:35] 2025-07-27 14:11:03,853 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 10:11:35] 2025-07-27 14:11:03,853 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 10:11:35] 2025-07-27 14:11:03,853 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 10:11:35] 2025-07-27 14:11:03,853 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 10:11:35] 2025-07-27 14:11:03,853 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 10:11:35] 2025-07-27 14:11:03,853 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 10:11:35] 2025-07-27 14:11:03,854 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 10:11:35] 2025-07-27 14:11:03,854 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 10:11:35] 2025-07-27 14:11:03,854 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 10:11:35] 2025-07-27 14:11:03,854 | INFO     | job 6746137292 has completed (purged errors)
[2025-07-27 10:11:35] 2025-07-27 14:11:03,854 | INFO     | overall cleanup function is called
[2025-07-27 10:11:35] 2025-07-27 14:11:04,863 | INFO     | --- collectZombieJob: --- 10, [2692396]
[2025-07-27 10:11:35] 2025-07-27 14:11:04,863 | INFO     | zombie collector waiting for pid 2692396
[2025-07-27 10:11:35] 2025-07-27 14:11:04,863 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 10:11:35] 2025-07-27 14:11:04,863 | INFO     | collected zombie processes
[2025-07-27 10:11:35] 2025-07-27 14:11:04,863 | INFO     | will attempt to kill all subprocesses of pid=2692396
[2025-07-27 10:11:35] 2025-07-27 14:11:05,133 | INFO     | process IDs to be killed: [2692396] (in reverse order)
[2025-07-27 10:11:35] 2025-07-27 14:11:05,238 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 10:11:35] 2025-07-27 14:11:05,239 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 10:11:35] 2025-07-27 14:11:05,250 | INFO     | did not find any defunct processes belonging to 2692396
[2025-07-27 10:11:35] 2025-07-27 14:11:05,261 | INFO     | did not find any defunct processes belonging to 2692396
[2025-07-27 10:11:35] 2025-07-27 14:11:05,262 | INFO     | ready for new job
[2025-07-27 10:11:35] 2025-07-27 14:11:05,262 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 10:11:35] 2025-07-27 14:11:05,264 | INFO     | ***************************************
[2025-07-27 10:11:35] 2025-07-27 14:11:05,264 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 10:11:35] 2025-07-27 14:11:05,264 | INFO     | ***************************************
[2025-07-27 10:11:35] 2025-07-27 14:11:05,264 | INFO     | 
[2025-07-27 10:11:35] 2025-07-27 14:11:05,281 | INFO     | architecture information:
[2025-07-27 10:11:35] 2025-07-27 14:11:05,281 | INFO     | executing command: cat /etc/os-release
[2025-07-27 10:11:35] 2025-07-27 14:11:05,299 | INFO     | cat /etc/os-release:
[2025-07-27 10:11:35] NAME="CentOS Linux"
[2025-07-27 10:11:35] VERSION="7 (Core)"
[2025-07-27 10:11:35] ID="centos"
[2025-07-27 10:11:35] ID_LIKE="rhel fedora"
[2025-07-27 10:11:35] VERSION_ID="7"
[2025-07-27 10:11:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 10:11:35] ANSI_COLOR="0;31"
[2025-07-27 10:11:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 10:11:35] HOME_URL="https://www.centos.org/"
[2025-07-27 10:11:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 10:11:35] 
[2025-07-27 10:11:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 10:11:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 10:11:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 10:11:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 10:11:35] 
[2025-07-27 10:11:35] 2025-07-27 14:11:05,299 | INFO     | ***************************************
[2025-07-27 10:11:35] 2025-07-27 14:11:05,803 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 10:11:35] 2025-07-27 14:11:05,824 | INFO     | sufficient remaining disk space (76271321088 B)
[2025-07-27 10:11:35] 2025-07-27 14:11:05,824 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 10:11:35] 2025-07-27 14:11:05,824 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 10:11:35] 2025-07-27 14:11:05,824 | INFO     | update_server=False
[2025-07-27 10:11:35] 2025-07-27 14:11:05,825 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 10:11:35] 2025-07-27 14:11:05,825 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 10:11:35] 2025-07-27 14:11:06,638 | INFO     | all data control threads have been joined
[2025-07-27 10:11:35] 2025-07-27 14:11:06,780 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 10:11:35] 2025-07-27 14:11:06,780 | INFO     | aborting loop
[2025-07-27 10:11:35] 2025-07-27 14:11:06,830 | INFO     | [job] retrieve thread has finished
[2025-07-27 10:11:35] 2025-07-27 14:11:06,881 | INFO     | [payload] validate_post thread has finished
[2025-07-27 10:11:35] 2025-07-27 14:11:07,048 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 10:11:35] 2025-07-27 14:11:07,087 | INFO     | all payload control threads have been joined
[2025-07-27 10:11:35] 2025-07-27 14:11:07,268 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 10:11:35] 2025-07-27 14:11:07,522 | INFO     | all job control threads have been joined
[2025-07-27 10:11:35] 2025-07-27 14:11:07,644 | INFO     | [data] control thread has finished
[2025-07-27 10:11:35] 2025-07-27 14:11:07,754 | INFO     | [data] copytool_in thread has finished
[2025-07-27 10:11:35] 2025-07-27 14:11:07,785 | INFO     | [job] job monitor thread has finished
[2025-07-27 10:11:35] 2025-07-27 14:11:07,830 | INFO     | [data] copytool_out thread has finished
[2025-07-27 10:11:35] 2025-07-27 14:11:07,850 | INFO     | [payload] failed_post thread has finished
[2025-07-27 10:11:35] 2025-07-27 14:11:07,853 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 10:11:35] 2025-07-27 14:11:07,961 | INFO     | [job] validate thread has finished
[2025-07-27 10:11:35] 2025-07-27 14:11:08,092 | INFO     | [payload] control thread has finished
[2025-07-27 10:11:35] 2025-07-27 14:11:08,172 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 10:11:35] 2025-07-27 14:11:08,201 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 10:11:35] 2025-07-27 14:11:08,527 | INFO     | [job] control thread has finished
[2025-07-27 10:11:35] 2025-07-27 14:11:08,782 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 10:11:35] 2025-07-27 14:11:09,787 | INFO     | [job] queue monitor thread has finished
[2025-07-27 10:11:35] 2025-07-27 14:11:11,862 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 10:11:35] 2025-07-27 14:11:13,591 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139942774191936)>', '<ExcThread(monitor, started 139942265067264)>']
[2025-07-27 10:11:35] 2025-07-27 14:11:18,616 | INFO     | all workflow threads have been joined
[2025-07-27 10:11:35] 2025-07-27 14:11:18,617 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 10:11:35] 2025-07-27 14:11:18,617 | INFO     | traces error code: 0
[2025-07-27 10:11:35] 2025-07-27 14:11:18,618 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 10:11:35] 2025-07-27 14:11:35,362 | INFO     | PID=2681805 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 10:11:35] 2025-07-27 14:11:35,363 | INFO     | .. there are 9 such processes running
[2025-07-27 10:11:35] 2025-07-27 14:11:35,365 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 10:11:35] 2025-07-27 14:11:35,365 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 10:11:35] 2025-07-27 14:11:35,365 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 10:11:35] 2025-07-27 14:11:35,365 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 10:11:35] 2025-07-27 14:11:35,365 | INFO     | [monitor] control thread has ended
[2025-07-27 10:11:35] 2025-07-27 14:11:35,553 [wrapper] ==== pilot stdout END ====
[2025-07-27 10:11:35] 2025-07-27 14:11:35,557 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 10:11:35] 2025-07-27 14:11:35,560 [wrapper] pilotpid: 2681805
[2025-07-27 10:11:35] 2025-07-27 14:11:35,562 [wrapper] Pilot exit status: 0
[2025-07-27 10:11:35] 2025-07-27 14:11:35,572 [wrapper] pandaids: 6746137292
[2025-07-27 10:11:35] 2025-07-27 14:11:35,652 [wrapper] cleanup supervisor_pilot 2970521 2681806
[2025-07-27 10:11:35] 2025-07-27 14:11:35,655 [wrapper] Test setup, not cleaning
[2025-07-27 10:11:35] 2025-07-27 14:11:35,659 [wrapper] apfmon messages muted
[2025-07-27 10:11:35] 2025-07-27 14:11:35,663 [wrapper] ==== wrapper stdout END ====
[2025-07-27 10:11:35] 2025-07-27 14:11:35,668 [wrapper] ==== wrapper stderr END ====
[2025-07-27 10:11:35]  *** Error codes and diagnostics ***
[2025-07-27 10:11:35]     "exeErrorCode": 0,
[2025-07-27 10:11:35]     "exeErrorDiag": "",
[2025-07-27 10:11:35]     "pilotErrorCode": 0,
[2025-07-27 10:11:35]     "pilotErrorDiag": "",
[2025-07-27 10:11:35]  *** Listing of results directory ***
[2025-07-27 10:11:35] total 414244
[2025-07-27 10:11:35] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 01:42 pilot3.tar.gz
[2025-07-27 10:11:35] -rwx------. 1 boincer umatlas     36292 Jul 27 01:44 runpilot2-wrapper.sh
[2025-07-27 10:11:35] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 01:44 queuedata.json
[2025-07-27 10:11:35] -rw-r--r--. 1 boincer umatlas       100 Jul 27 08:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 10:11:35] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 08:43 run_atlas
[2025-07-27 10:11:35] -rw-r--r--. 1 boincer umatlas       105 Jul 27 08:43 job.xml
[2025-07-27 10:11:35] -rw-r--r--. 2 boincer umatlas 242454575 Jul 27 08:43 EVNT.45758381._000005.pool.root.1
[2025-07-27 10:11:35] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 08:43 start_atlas.sh
[2025-07-27 10:11:35] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 08:43 shared
[2025-07-27 10:11:35] -rw-r--r--. 2 boincer umatlas    542878 Jul 27 08:43 input.tar.gz
[2025-07-27 10:11:35] -rw-r--r--. 1 boincer umatlas         0 Jul 27 08:43 boinc_lockfile
[2025-07-27 10:11:35] -rw-r--r--. 1 boincer umatlas      2554 Jul 27 08:43 pandaJob.out
[2025-07-27 10:11:35] -rw-------. 1 boincer umatlas    980117 Jul 27 08:43 agis_schedconf.cvmfs.json
[2025-07-27 10:11:35] -rw-------. 1 boincer umatlas   1593052 Jul 27 08:43 agis_ddmendpoints.agis.ALL.json
[2025-07-27 10:11:35] drwx------. 4 boincer umatlas      4096 Jul 27 08:43 pilot3
[2025-07-27 10:11:35] -rw-r--r--. 1 boincer umatlas      6842 Jul 27 10:02 init_data.xml
[2025-07-27 10:11:35] -rw-------. 1 boincer umatlas 176095055 Jul 27 10:10 HITS.45758383._000110.pool.root.1
[2025-07-27 10:11:35] -rw-r--r--. 1 boincer umatlas       530 Jul 27 10:10 boinc_task_state.xml
[2025-07-27 10:11:35] -rw-------. 1 boincer umatlas      1035 Jul 27 10:10 memory_monitor_summary.json
[2025-07-27 10:11:35] -rw-------. 1 boincer umatlas    368361 Jul 27 10:10 log.45758383._000110.job.log.tgz.1
[2025-07-27 10:11:35] -rw-------. 1 boincer umatlas      7816 Jul 27 10:11 heartbeat.json
[2025-07-27 10:11:35] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 10:11 boinc_mmap_file
[2025-07-27 10:11:35] -rw-r--r--. 1 boincer umatlas        27 Jul 27 10:11 wrapper_checkpoint.txt
[2025-07-27 10:11:35] -rw-------. 1 boincer umatlas        95 Jul 27 10:11 pilot_heartbeat.json
[2025-07-27 10:11:35] -rw-------. 1 boincer umatlas       822 Jul 27 10:11 pilotlog.txt
[2025-07-27 10:11:35] -rw-------. 1 boincer umatlas    515609 Jul 27 10:11 log.45758383._000110.job.log.1
[2025-07-27 10:11:35] -rw-------. 1 boincer umatlas       357 Jul 27 10:11 output.list
[2025-07-27 10:11:35] -rw-r--r--. 1 boincer umatlas       620 Jul 27 10:11 runtime_log
[2025-07-27 10:11:35] -rw-------. 1 boincer umatlas    901120 Jul 27 10:11 result.tar.gz
[2025-07-27 10:11:35] -rw-------. 1 boincer umatlas       655 Jul 27 10:11 xPsKDmHM9z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmgOULDm59IKWm.diag
[2025-07-27 10:11:35] -rw-r--r--. 1 boincer umatlas      8667 Jul 27 10:11 runtime_log.err
[2025-07-27 10:11:35] -rw-r--r--. 1 boincer umatlas     21776 Jul 27 10:11 stderr.txt
[2025-07-27 10:11:35] HITS file was successfully produced:
[2025-07-27 10:11:35] -rw-------. 1 boincer umatlas 176095055 Jul 27 10:10 shared/HITS.pool.root.1
[2025-07-27 10:11:35]  *** Contents of shared directory: ***
[2025-07-27 10:11:35] total 410176
[2025-07-27 10:11:35] -rw-r--r--. 2 boincer umatlas 242454575 Jul 27 08:43 ATLAS.root_0
[2025-07-27 10:11:35] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 08:43 start_atlas.sh
[2025-07-27 10:11:35] -rw-r--r--. 2 boincer umatlas    542878 Jul 27 08:43 input.tar.gz
[2025-07-27 10:11:35] -rw-------. 1 boincer umatlas 176095055 Jul 27 10:10 HITS.pool.root.1
[2025-07-27 10:11:35] -rw-------. 1 boincer umatlas    901120 Jul 27 10:11 result.tar.gz
10:11:37 (2678216): run_atlas exited; CPU time 56664.649195
10:11:37 (2678216): called boinc_finish(0)

</stderr_txt>
]]>

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