Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:15:40 (3021821): wrapper (7.7.26015): starting
11:15:40 (3021821): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 11:15:40] Arguments: --nthreads 12
[2025-07-27 11:15:40] Threads: 12
[2025-07-27 11:15:40] Checking for CVMFS
[2025-07-27 11:15:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 11:15:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 11:15:40] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 11:15:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 11:15:41] 2.12.6.0 951823 18530 271808 148817 1 309 40578467 40960000 13283 16776704 0 41399400 99.720 53111736 27960 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 11:15:41] CVMFS is ok
[2025-07-27 11:15:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 11:15:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 11:15:41] Further information can be found at the LHC@home message board.
[2025-07-27 11:15:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 11:15:41] Checking for apptainer binary...
[2025-07-27 11:15:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 11:15:41] Running /usr/bin/apptainer --version
[2025-07-27 11:15:41] apptainer version 1.4.1-1.el9
[2025-07-27 11:15:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 11:15:41] c6-8-12-3.aglt2.org
[2025-07-27 11:15:41] apptainer works
[2025-07-27 11:15:41] Set ATHENA_PROC_NUMBER=12
[2025-07-27 11:15:41] Set ATHENA_CORE_NUMBER=12
[2025-07-27 11:15:41] Starting ATLAS job with PandaID=6746065086
[2025-07-27 11:15:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
13:11:27 (3568699): wrapper (7.7.26015): starting
13:11:27 (3568699): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 13:11:27] Arguments: --nthreads 12
[2025-07-27 13:11:27] Threads: 12
[2025-07-27 13:11:27] This job has been restarted, cleaning up previous attempt
[2025-07-27 13:11:27] Checking for CVMFS
[2025-07-27 13:11:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 13:11:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 13:11:27] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 13:11:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 13:11:28] 2.12.6.0 951823 18645 263624 148818 1 177 40669930 40960001 15684 16776704 0 41568034 99.721 53142077 27959 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 13:11:28] CVMFS is ok
[2025-07-27 13:11:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 13:11:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 13:11:28] Further information can be found at the LHC@home message board.
[2025-07-27 13:11:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 13:11:28] Checking for apptainer binary...
[2025-07-27 13:11:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 13:11:28] Running /usr/bin/apptainer --version
[2025-07-27 13:11:28] apptainer version 1.4.1-1.el9
[2025-07-27 13:11:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 13:11:28] c6-8-12-3.aglt2.org
[2025-07-27 13:11:28] apptainer works
[2025-07-27 13:11:28] Set ATHENA_PROC_NUMBER=12
[2025-07-27 13:11:28] Set ATHENA_CORE_NUMBER=12
[2025-07-27 13:11:28] Starting ATLAS job with PandaID=6746065086
[2025-07-27 13:11:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 15:28:35]  *** The last 200 lines of the pilot log: ***
[2025-07-27 15:28:35] 2025-07-27 19:28:03,246 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6746065086/HITS.45759671._000037.pool.root.1 since it does not exist
[2025-07-27 15:28:35] 2025-07-27 19:28:03,244 | INFO     | fitting pss+swap vs Time
[2025-07-27 15:28:35] 2025-07-27 19:28:03,252 | INFO     | sum of square deviations: 729425223.8796979
[2025-07-27 15:28:35] 2025-07-27 19:28:03,253 | INFO     | sum of deviations: 3655051175.142855
[2025-07-27 15:28:35] 2025-07-27 19:28:03,253 | INFO     | mean x: 1753640386.6015038
[2025-07-27 15:28:35] 2025-07-27 19:28:03,253 | INFO     | mean y: 2406103.285714286
[2025-07-27 15:28:35] 2025-07-27 19:28:03,253 | INFO     | -- intersect: -8784848773.552658
[2025-07-27 15:28:35] 2025-07-27 19:28:03,254 | INFO     | intersect: -8784848773.552658
[2025-07-27 15:28:35] 2025-07-27 19:28:03,254 | INFO     | chi2: 2.373201113515173
[2025-07-27 15:28:35] 2025-07-27 19:28:03,254 | INFO     | sum of square deviations: 650229532.0
[2025-07-27 15:28:35] 2025-07-27 19:28:03,254 | INFO     | sum of deviations: 5215634551.75
[2025-07-27 15:28:35] 2025-07-27 19:28:03,254 | INFO     | mean x: 1753640234.125
[2025-07-27 15:28:35] 2025-07-27 19:28:03,254 | INFO     | mean y: 2409077.765625
[2025-07-27 15:28:35] 2025-07-27 19:28:03,254 | INFO     | -- intersect: -14063926187.42702
[2025-07-27 15:28:35] 2025-07-27 19:28:03,254 | INFO     | intersect: -14063926187.42702
[2025-07-27 15:28:35] 2025-07-27 19:28:03,254 | INFO     | chi2: 2.37423238078445
[2025-07-27 15:28:35] 2025-07-27 19:28:03,254 | INFO     | current chi2=2.37423238078445 (change=-0.04345469346882307 %)
[2025-07-27 15:28:35] 2025-07-27 19:28:03,255 | INFO     | right removable region: 127
[2025-07-27 15:28:35] 2025-07-27 19:28:03,255 | INFO     | sum of square deviations: 650180732.0
[2025-07-27 15:28:35] 2025-07-27 19:28:03,255 | INFO     | sum of deviations: -21317906936.125
[2025-07-27 15:28:35] 2025-07-27 19:28:03,255 | INFO     | mean x: 1753640539.125
[2025-07-27 15:28:35] 2025-07-27 19:28:03,255 | INFO     | mean y: 2453643.1953125
[2025-07-27 15:28:35] 2025-07-27 19:28:03,255 | INFO     | -- intersect: 57500229219.36053
[2025-07-27 15:28:35] 2025-07-27 19:28:03,255 | INFO     | intersect: 57500229219.36053
[2025-07-27 15:28:35] 2025-07-27 19:28:03,255 | INFO     | chi2: 0.4234300468589848
[2025-07-27 15:28:35] 2025-07-27 19:28:03,255 | INFO     | current chi2=0.4234300468589848 (change=82.15785234350398 %)
[2025-07-27 15:28:35] 2025-07-27 19:28:03,255 | INFO     | sum of square deviations: 576889839.9674814
[2025-07-27 15:28:35] 2025-07-27 19:28:03,256 | INFO     | sum of deviations: -28609965433.504055
[2025-07-27 15:28:35] 2025-07-27 19:28:03,256 | INFO     | mean x: 1753640691.6504066
[2025-07-27 15:28:35] 2025-07-27 19:28:03,256 | INFO     | mean y: 2468669.0813008132
[2025-07-27 15:28:35] 2025-07-27 19:28:03,256 | INFO     | -- intersect: 86971584945.65222
[2025-07-27 15:28:35] 2025-07-27 19:28:03,256 | INFO     | intersect: 86971584945.65222
[2025-07-27 15:28:35] 2025-07-27 19:28:03,256 | INFO     | chi2: 0.17727399031864827
[2025-07-27 15:28:35] 2025-07-27 19:28:03,257 | INFO     | current chi2=0.17727399031864827 (change=58.13381888373974 %)
[2025-07-27 15:28:35] 2025-07-27 19:28:03,257 | INFO     | sum of square deviations: 509334991.9406776
[2025-07-27 15:28:35] 2025-07-27 19:28:03,257 | INFO     | sum of deviations: -26084944228.983055
[2025-07-27 15:28:35] 2025-07-27 19:28:03,258 | INFO     | mean x: 1753640844.161017
[2025-07-27 15:28:35] 2025-07-27 19:28:03,258 | INFO     | mean y: 2462949.525423729
[2025-07-27 15:28:35] 2025-07-27 19:28:03,258 | INFO     | -- intersect: 89812949842.07858
[2025-07-27 15:28:35] 2025-07-27 19:28:03,258 | INFO     | intersect: 89812949842.07858
[2025-07-27 15:28:35] 2025-07-27 19:28:03,258 | INFO     | chi2: 0.1749348347767351
[2025-07-27 15:28:35] 2025-07-27 19:28:03,258 | INFO     | current chi2=0.1749348347767351 (change=1.3195142376546911 %)
[2025-07-27 15:28:35] 2025-07-27 19:28:03,258 | INFO     | left removable region: 30
[2025-07-27 15:28:35] 2025-07-27 19:28:03,259 | INFO     | sum of square deviations: 282885081.91752625
[2025-07-27 15:28:35] 2025-07-27 19:28:03,259 | INFO     | sum of deviations: -13862020894.185562
[2025-07-27 15:28:35] 2025-07-27 19:28:03,259 | INFO     | mean x: 1753641118.7113402
[2025-07-27 15:28:35] 2025-07-27 19:28:03,260 | INFO     | mean y: 2440359.350515464
[2025-07-27 15:28:35] 2025-07-27 19:28:03,260 | INFO     | -- intersect: 85934896265.83311
[2025-07-27 15:28:35] 2025-07-27 19:28:03,260 | INFO     | intersect: 85934896265.83311
[2025-07-27 15:28:35] 2025-07-27 19:28:03,260 | INFO     | chi2: 0.16163992084185966
[2025-07-27 15:28:35] 2025-07-27 19:28:03,260 | INFO     | -- intersect: 85934896265.83311
[2025-07-27 15:28:35] 2025-07-27 19:28:03,260 | INFO     | current memory leak: -49.00 B/s (using 97 data points, chi2=0.16)
[2025-07-27 15:28:35] 2025-07-27 19:28:03,261 | INFO     | could have reported an average CPU frequency of 2629 MHz (8 samples)
[2025-07-27 15:28:35] 2025-07-27 19:28:03,261 | INFO     | ..............................
[2025-07-27 15:28:35] 2025-07-27 19:28:03,261 | INFO     | . Timing measurements:
[2025-07-27 15:28:35] 2025-07-27 19:28:03,261 | INFO     | . get job = 0 s
[2025-07-27 15:28:35] 2025-07-27 19:28:03,261 | INFO     | . initial setup = 2 s
[2025-07-27 15:28:35] 2025-07-27 19:28:03,261 | INFO     | . payload setup = 15 s
[2025-07-27 15:28:35] 2025-07-27 19:28:03,262 | INFO     | . stage-in = 0 s
[2025-07-27 15:28:35] 2025-07-27 19:28:03,262 | INFO     | . payload execution = 8122 s
[2025-07-27 15:28:35] 2025-07-27 19:28:03,262 | INFO     | . stage-out = 2 s
[2025-07-27 15:28:35] 2025-07-27 19:28:03,262 | INFO     | . log creation = 0 s
[2025-07-27 15:28:35] 2025-07-27 19:28:03,262 | INFO     | ..............................
[2025-07-27 15:28:35] 2025-07-27 19:28:03,373 | INFO     | 
[2025-07-27 15:28:35] 2025-07-27 19:28:03,374 | INFO     | job summary report
[2025-07-27 15:28:35] 2025-07-27 19:28:03,374 | INFO     | --------------------------------------------------
[2025-07-27 15:28:35] 2025-07-27 19:28:03,374 | INFO     | PanDA job id: 6746065086
[2025-07-27 15:28:35] 2025-07-27 19:28:03,374 | INFO     | task id: 45759671
[2025-07-27 15:28:35] 2025-07-27 19:28:03,374 | INFO     | errors: (none)
[2025-07-27 15:28:35] 2025-07-27 19:28:03,374 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 15:28:35] 2025-07-27 19:28:03,375 | INFO     | pilot state: finished 
[2025-07-27 15:28:35] 2025-07-27 19:28:03,375 | INFO     | transexitcode: 0
[2025-07-27 15:28:35] 2025-07-27 19:28:03,375 | INFO     | exeerrorcode: 0
[2025-07-27 15:28:35] 2025-07-27 19:28:03,375 | INFO     | exeerrordiag: 
[2025-07-27 15:28:35] 2025-07-27 19:28:03,375 | INFO     | exitcode: 0
[2025-07-27 15:28:35] 2025-07-27 19:28:03,375 | INFO     | exitmsg: OK
[2025-07-27 15:28:35] 2025-07-27 19:28:03,375 | INFO     | cpuconsumptiontime: 52146 s
[2025-07-27 15:28:35] 2025-07-27 19:28:03,375 | INFO     | nevents: 400
[2025-07-27 15:28:35] 2025-07-27 19:28:03,375 | INFO     | neventsw: 0
[2025-07-27 15:28:35] 2025-07-27 19:28:03,375 | INFO     | pid: 3581371
[2025-07-27 15:28:35] 2025-07-27 19:28:03,375 | INFO     | pgrp: 3581371
[2025-07-27 15:28:35] 2025-07-27 19:28:03,375 | INFO     | corecount: 12
[2025-07-27 15:28:35] 2025-07-27 19:28:03,375 | INFO     | event service: False
[2025-07-27 15:28:35] 2025-07-27 19:28:03,376 | INFO     | sizes: {0: 2397242, 1: 2397441, 11: 2397703, 12: 2397731, 8142: 2425518, 8145: 2434516, 8146: 2434700, 8151: 2434922}
[2025-07-27 15:28:35] 2025-07-27 19:28:03,376 | INFO     | --------------------------------------------------
[2025-07-27 15:28:35] 2025-07-27 19:28:03,376 | INFO     | 
[2025-07-27 15:28:35] 2025-07-27 19:28:03,376 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 15:28:35] 2025-07-27 19:28:03,395 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 15:28:35] 2025-07-27 19:28:03,396 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 15:28:35] 2025-07-27 19:28:03,396 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 15:28:35] 2025-07-27 19:28:03,396 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 15:28:35] 2025-07-27 19:28:03,396 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 15:28:35] 2025-07-27 19:28:03,396 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 15:28:35] 2025-07-27 19:28:03,396 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 15:28:35] 2025-07-27 19:28:03,396 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 15:28:35] 2025-07-27 19:28:03,396 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 15:28:35] 2025-07-27 19:28:03,396 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 15:28:35] 2025-07-27 19:28:03,396 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 15:28:35] 2025-07-27 19:28:03,396 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 15:28:35] 2025-07-27 19:28:03,396 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 15:28:35] 2025-07-27 19:28:03,396 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 15:28:35] 2025-07-27 19:28:03,396 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 15:28:35] 2025-07-27 19:28:03,397 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 15:28:35] 2025-07-27 19:28:03,397 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 15:28:35] 2025-07-27 19:28:03,397 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 15:28:35] 2025-07-27 19:28:03,397 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 15:28:35] 2025-07-27 19:28:03,397 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 15:28:35] 2025-07-27 19:28:03,397 | INFO     | job 6746065086 has completed (purged errors)
[2025-07-27 15:28:35] 2025-07-27 19:28:03,397 | INFO     | overall cleanup function is called
[2025-07-27 15:28:35] 2025-07-27 19:28:03,649 | INFO     | number of running child processes to parent process 3581371: 1
[2025-07-27 15:28:35] 2025-07-27 19:28:03,650 | INFO     | maximum number of monitored processes: 6
[2025-07-27 15:28:35] 2025-07-27 19:28:03,650 | INFO     | aborting job monitoring since job object (job id=6746065086) has expired
[2025-07-27 15:28:35] 2025-07-27 19:28:04,413 | INFO     | --- collectZombieJob: --- 10, [3581371]
[2025-07-27 15:28:35] 2025-07-27 19:28:04,414 | INFO     | zombie collector waiting for pid 3581371
[2025-07-27 15:28:35] 2025-07-27 19:28:04,414 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 15:28:35] 2025-07-27 19:28:04,414 | INFO     | collected zombie processes
[2025-07-27 15:28:35] 2025-07-27 19:28:04,414 | INFO     | will attempt to kill all subprocesses of pid=3581371
[2025-07-27 15:28:35] 2025-07-27 19:28:04,697 | INFO     | process IDs to be killed: [3581371] (in reverse order)
[2025-07-27 15:28:35] 2025-07-27 19:28:04,796 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 15:28:35] 2025-07-27 19:28:04,797 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 15:28:35] 2025-07-27 19:28:04,809 | INFO     | did not find any defunct processes belonging to 3581371
[2025-07-27 15:28:35] 2025-07-27 19:28:04,820 | INFO     | did not find any defunct processes belonging to 3581371
[2025-07-27 15:28:35] 2025-07-27 19:28:04,821 | INFO     | ready for new job
[2025-07-27 15:28:35] 2025-07-27 19:28:04,821 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 15:28:35] 2025-07-27 19:28:04,822 | INFO     | ***************************************
[2025-07-27 15:28:35] 2025-07-27 19:28:04,822 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 15:28:35] 2025-07-27 19:28:04,823 | INFO     | ***************************************
[2025-07-27 15:28:35] 2025-07-27 19:28:04,823 | INFO     | 
[2025-07-27 15:28:35] 2025-07-27 19:28:04,843 | INFO     | architecture information:
[2025-07-27 15:28:35] 2025-07-27 19:28:04,843 | INFO     | executing command: cat /etc/os-release
[2025-07-27 15:28:35] 2025-07-27 19:28:04,859 | INFO     | cat /etc/os-release:
[2025-07-27 15:28:35] NAME="CentOS Linux"
[2025-07-27 15:28:35] VERSION="7 (Core)"
[2025-07-27 15:28:35] ID="centos"
[2025-07-27 15:28:35] ID_LIKE="rhel fedora"
[2025-07-27 15:28:35] VERSION_ID="7"
[2025-07-27 15:28:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 15:28:35] ANSI_COLOR="0;31"
[2025-07-27 15:28:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 15:28:35] HOME_URL="https://www.centos.org/"
[2025-07-27 15:28:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 15:28:35] 
[2025-07-27 15:28:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 15:28:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 15:28:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 15:28:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 15:28:35] 
[2025-07-27 15:28:35] 2025-07-27 19:28:04,859 | INFO     | ***************************************
[2025-07-27 15:28:35] 2025-07-27 19:28:05,363 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 15:28:35] 2025-07-27 19:28:05,381 | INFO     | sufficient remaining disk space (56323211264 B)
[2025-07-27 15:28:35] 2025-07-27 19:28:05,381 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 15:28:35] 2025-07-27 19:28:05,381 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 15:28:35] 2025-07-27 19:28:05,382 | INFO     | update_server=False
[2025-07-27 15:28:35] 2025-07-27 19:28:05,382 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 15:28:35] 2025-07-27 19:28:05,382 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 15:28:35] 2025-07-27 19:28:05,382 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 15:28:35] 2025-07-27 19:28:05,382 | INFO     | aborting loop
[2025-07-27 15:28:35] 2025-07-27 19:28:06,038 | INFO     | all data control threads have been joined
[2025-07-27 15:28:35] 2025-07-27 19:28:06,234 | INFO     | all payload control threads have been joined
[2025-07-27 15:28:35] 2025-07-27 19:28:06,387 | INFO     | [job] retrieve thread has finished
[2025-07-27 15:28:35] 2025-07-27 19:28:06,387 | INFO     | [job] job monitor thread has finished
[2025-07-27 15:28:35] 2025-07-27 19:28:06,473 | INFO     | [job] validate thread has finished
[2025-07-27 15:28:35] 2025-07-27 19:28:06,499 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 15:28:35] 2025-07-27 19:28:06,859 | INFO     | [payload] failed_post thread has finished
[2025-07-27 15:28:35] 2025-07-27 19:28:06,864 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 15:28:35] 2025-07-27 19:28:06,934 | INFO     | all job control threads have been joined
[2025-07-27 15:28:35] 2025-07-27 19:28:07,044 | INFO     | [data] control thread has finished
[2025-07-27 15:28:35] 2025-07-27 19:28:07,105 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 15:28:35] 2025-07-27 19:28:07,240 | INFO     | [payload] control thread has finished
[2025-07-27 15:28:35] 2025-07-27 19:28:07,390 | INFO     | [data] copytool_out thread has finished
[2025-07-27 15:28:35] 2025-07-27 19:28:07,474 | INFO     | [data] copytool_in thread has finished
[2025-07-27 15:28:35] 2025-07-27 19:28:07,884 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 15:28:35] 2025-07-27 19:28:07,929 | INFO     | [payload] validate_post thread has finished
[2025-07-27 15:28:35] 2025-07-27 19:28:07,940 | INFO     | [job] control thread has finished
[2025-07-27 15:28:35] 2025-07-27 19:28:08,095 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 15:28:35] 2025-07-27 19:28:08,387 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 15:28:35] 2025-07-27 19:28:09,393 | INFO     | [job] queue monitor thread has finished
[2025-07-27 15:28:35] 2025-07-27 19:28:12,106 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 15:28:35] 2025-07-27 19:28:14,146 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140563975960384)>', '<ExcThread(monitor, started 140563634431744)>']
[2025-07-27 15:28:35] 2025-07-27 19:28:19,171 | INFO     | all workflow threads have been joined
[2025-07-27 15:28:35] 2025-07-27 19:28:19,176 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 15:28:35] 2025-07-27 19:28:19,177 | INFO     | traces error code: 0
[2025-07-27 15:28:35] 2025-07-27 19:28:19,177 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 15:28:35] 2025-07-27 19:28:35,366 | INFO     | PID=3572303 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 15:28:35] 2025-07-27 19:28:35,366 | INFO     | .. there are 21 such processes running
[2025-07-27 15:28:35] 2025-07-27 19:28:35,367 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 15:28:35] 2025-07-27 19:28:35,367 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 15:28:35] 2025-07-27 19:28:35,367 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 15:28:35] 2025-07-27 19:28:35,367 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 15:28:35] 2025-07-27 19:28:35,367 | INFO     | [monitor] control thread has ended
[2025-07-27 15:28:35] 2025-07-27 19:28:35,525 [wrapper] ==== pilot stdout END ====
[2025-07-27 15:28:35] 2025-07-27 19:28:35,528 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 15:28:35] 2025-07-27 19:28:35,530 [wrapper] pilotpid: 3572303
[2025-07-27 15:28:35] 2025-07-27 19:28:35,533 [wrapper] Pilot exit status: 0
[2025-07-27 15:28:35] 2025-07-27 19:28:35,545 [wrapper] pandaids: 6746065086 6746065086
[2025-07-27 15:28:35] 2025-07-27 19:28:35,627 [wrapper] cleanup supervisor_pilot 4023740 3572304
[2025-07-27 15:28:35] 2025-07-27 19:28:35,630 [wrapper] Test setup, not cleaning
[2025-07-27 15:28:35] 2025-07-27 19:28:35,642 [wrapper] apfmon messages muted
[2025-07-27 15:28:35] 2025-07-27 19:28:35,650 [wrapper] ==== wrapper stdout END ====
[2025-07-27 15:28:35] 2025-07-27 19:28:35,654 [wrapper] ==== wrapper stderr END ====
[2025-07-27 15:28:35]  *** Error codes and diagnostics ***
[2025-07-27 15:28:35]     "exeErrorCode": 0,
[2025-07-27 15:28:35]     "exeErrorDiag": "",
[2025-07-27 15:28:35]     "pilotErrorCode": 0,
[2025-07-27 15:28:35]     "pilotErrorDiag": "",
[2025-07-27 15:28:35]  *** Listing of results directory ***
[2025-07-27 15:28:35] total 642788
[2025-07-27 15:28:35] drwx------. 4 boincer umatlas      4096 Jun 17 06:04 pilot3
[2025-07-27 15:28:35] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 01:23 pilot3.tar.gz
[2025-07-27 15:28:35] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 01:24 queuedata.json
[2025-07-27 15:28:35] -rwx------. 1 boincer umatlas     36292 Jul 27 01:25 runpilot2-wrapper.sh
[2025-07-27 15:28:35] -rw-r--r--. 1 boincer umatlas       100 Jul 27 11:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 15:28:35] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 11:15 run_atlas
[2025-07-27 15:28:35] -rw-r--r--. 1 boincer umatlas       105 Jul 27 11:15 job.xml
[2025-07-27 15:28:35] -rw-r--r--. 3 boincer umatlas 239289766 Jul 27 11:15 EVNT.45759667._000002.pool.root.1
[2025-07-27 15:28:35] -rw-r--r--. 3 boincer umatlas 239289766 Jul 27 11:15 ATLAS.root_0
[2025-07-27 15:28:35] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 11:15 start_atlas.sh
[2025-07-27 15:28:35] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 11:15 shared
[2025-07-27 15:28:35] -rw-r--r--. 2 boincer umatlas    542880 Jul 27 11:15 input.tar.gz
[2025-07-27 15:28:35] -rw-r--r--. 1 boincer umatlas         0 Jul 27 11:15 boinc_lockfile
[2025-07-27 15:28:35] -rw-r--r--. 1 boincer umatlas      2556 Jul 27 13:11 pandaJob.out
[2025-07-27 15:28:35] -rw-------. 1 boincer umatlas    980125 Jul 27 13:11 agis_schedconf.cvmfs.json
[2025-07-27 15:28:35] -rw-r--r--. 1 boincer umatlas      6843 Jul 27 15:27 init_data.xml
[2025-07-27 15:28:35] -rw-r--r--. 1 boincer umatlas       531 Jul 27 15:27 boinc_task_state.xml
[2025-07-27 15:28:35] -rw-------. 1 boincer umatlas 173482468 Jul 27 15:27 HITS.45759671._000037.pool.root.1
[2025-07-27 15:28:35] -rw-------. 1 boincer umatlas      1038 Jul 27 15:27 memory_monitor_summary.json
[2025-07-27 15:28:35] -rw-------. 1 boincer umatlas   1593052 Jul 27 15:27 agis_ddmendpoints.agis.ALL.json
[2025-07-27 15:28:35] -rw-------. 1 boincer umatlas    399992 Jul 27 15:27 log.45759671._000037.job.log.tgz.1
[2025-07-27 15:28:35] -rw-------. 1 boincer umatlas      7825 Jul 27 15:28 heartbeat.json
[2025-07-27 15:28:35] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 15:28 boinc_mmap_file
[2025-07-27 15:28:35] -rw-r--r--. 1 boincer umatlas        28 Jul 27 15:28 wrapper_checkpoint.txt
[2025-07-27 15:28:35] -rw-------. 1 boincer umatlas       823 Jul 27 15:28 pilotlog.txt
[2025-07-27 15:28:35] -rw-------. 1 boincer umatlas        96 Jul 27 15:28 pilot_heartbeat.json
[2025-07-27 15:28:35] -rw-------. 1 boincer umatlas    734949 Jul 27 15:28 log.45759671._000037.job.log.1
[2025-07-27 15:28:35] -rw-------. 1 boincer umatlas       357 Jul 27 15:28 output.list
[2025-07-27 15:28:35] -rw-r--r--. 1 boincer umatlas       620 Jul 27 15:28 runtime_log
[2025-07-27 15:28:35] -rw-------. 1 boincer umatlas   1157120 Jul 27 15:28 result.tar.gz
[2025-07-27 15:28:35] -rw-r--r--. 1 boincer umatlas      8752 Jul 27 15:28 runtime_log.err
[2025-07-27 15:28:35] -rw-------. 1 boincer umatlas       780 Jul 27 15:28 5HWKDmv38z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmGKULDmIJZUcn.diag
[2025-07-27 15:28:35] -rw-r--r--. 1 boincer umatlas     23288 Jul 27 15:28 stderr.txt
[2025-07-27 15:28:35] HITS file was successfully produced:
[2025-07-27 15:28:35] -rw-------. 1 boincer umatlas 173482468 Jul 27 15:27 shared/HITS.pool.root.1
[2025-07-27 15:28:35]  *** Contents of shared directory: ***
[2025-07-27 15:28:35] total 404788
[2025-07-27 15:28:35] -rw-r--r--. 3 boincer umatlas 239289766 Jul 27 11:15 ATLAS.root_0
[2025-07-27 15:28:35] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 11:15 start_atlas.sh
[2025-07-27 15:28:35] -rw-r--r--. 2 boincer umatlas    542880 Jul 27 11:15 input.tar.gz
[2025-07-27 15:28:35] -rw-------. 1 boincer umatlas 173482468 Jul 27 15:27 HITS.pool.root.1
[2025-07-27 15:28:35] -rw-------. 1 boincer umatlas   1157120 Jul 27 15:28 result.tar.gz
15:28:57 (3568699): run_atlas exited; CPU time 52311.524159
15:28:57 (3568699): called boinc_finish(0)

</stderr_txt>
]]>

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