Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:13:29 (3379410): wrapper (7.7.26015): starting
08:13:29 (3379410): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 08:13:29] Arguments: --nthreads 12
[2025-07-27 08:13:29] Threads: 12
[2025-07-27 08:13:29] Checking for CVMFS
[2025-07-27 08:13:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 08:13:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 08:13:29] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 08:13:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 08:13:30] 2.13.0.0 2408171 18351 324472 148811 0 397 21234392 32935936 8571 16776704 0 37583502 99.690 57504744 29751 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 08:13:30] CVMFS is ok
[2025-07-27 08:13:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 08:13:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 08:13:30] Further information can be found at the LHC@home message board.
[2025-07-27 08:13:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 08:13:30] Checking for apptainer binary...
[2025-07-27 08:13:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 08:13:30] Running /usr/bin/apptainer --version
[2025-07-27 08:13:30] apptainer version 1.4.1-1.el9
[2025-07-27 08:13:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 08:13:30] c6-5-7-3.aglt2.org
[2025-07-27 08:13:30] apptainer works
[2025-07-27 08:13:30] Set ATHENA_PROC_NUMBER=12
[2025-07-27 08:13:30] Set ATHENA_CORE_NUMBER=12
[2025-07-27 08:13:30] Starting ATLAS job with PandaID=6746054801
[2025-07-27 08:13:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 09:30:59]  *** The last 200 lines of the pilot log: ***
[2025-07-27 09:30:59]  protocol_id=None
[2025-07-27 09:30:59]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 09:30:59]  replicas=None
[2025-07-27 09:30:59]  scope=mc23_13p6TeV
[2025-07-27 09:30:59]  status=None
[2025-07-27 09:30:59]  status_code=0
[2025-07-27 09:30:59]  storage_token=
[2025-07-27 09:30:59]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6746054801/log.45758358._000103.job.log.tgz.1
[2025-07-27 09:30:59]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9f/3a/log.45758358._000103.job.log.tgz.1
[2025-07-27 09:30:59]  workdir=None
[2025-07-27 09:30:59] ]
[2025-07-27 09:30:59] 2025-07-27 13:30:15,963 | INFO     | transferring file log.45758358._000103.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6746054801/log.45758358._000103.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 09:30:59] 2025-07-27 13:30:15,964 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6746054801/log.45758358._000103.job.log.tgz.1 /tmp/boinchome/slots/0/log.45758358._000103.job
[2025-07-27 09:30:59] 2025-07-27 13:30:15,983 | INFO     | adding to output.list: log.45758358._000103.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9f/3a/log.45758358._000103.job.log.tg
[2025-07-27 09:30:59] 2025-07-27 13:30:15,984 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 09:30:59] 2025-07-27 13:30:15,985 | INFO     | summary of transferred files:
[2025-07-27 09:30:59] 2025-07-27 13:30:15,985 | INFO     |  -- lfn=log.45758358._000103.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 09:30:59] 2025-07-27 13:30:15,985 | INFO     | stage-out finished correctly
[2025-07-27 09:30:59] 2025-07-27 13:30:16,939 | INFO     | monitor loop #336: job 0:6746054801 is in state 'finished'
[2025-07-27 09:30:59] 2025-07-27 13:30:16,939 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 09:30:59] 2025-07-27 13:30:19,182 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 09:30:59] 2025-07-27 13:30:19,442 | INFO     | monitor loop #337: job 0:6746054801 is in state 'finished'
[2025-07-27 09:30:59] 2025-07-27 13:30:19,443 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 09:30:59] 2025-07-27 13:30:21,378 | INFO     | job 6746054801 has state=finished
[2025-07-27 09:30:59] 2025-07-27 13:30:21,379 | INFO     | preparing for final server update for job 6746054801 in state='finished'
[2025-07-27 09:30:59] 2025-07-27 13:30:21,379 | INFO     | this job has now completed (state=finished)
[2025-07-27 09:30:59] 2025-07-27 13:30:21,380 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 09:30:59] 2025-07-27 13:30:21,380 | INFO     | log transfer has been attempted: DONE
[2025-07-27 09:30:59] 2025-07-27 13:30:21,380 | INFO     | job 6746054801 has finished - writing final server update
[2025-07-27 09:30:59] 2025-07-27 13:30:21,380 | INFO     | total number of processed events: 400 (read)
[2025-07-27 09:30:59] 2025-07-27 13:30:21,382 | INFO     | executing command: lscpu
[2025-07-27 09:30:59] 2025-07-27 13:30:21,449 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 09:30:59] 2025-07-27 13:30:21,946 | INFO     | monitor loop #338: job 0:6746054801 is in state 'finished'
[2025-07-27 09:30:59] 2025-07-27 13:30:21,947 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 09:30:59] 2025-07-27 13:30:24,449 | INFO     | monitor loop #339: job 0:6746054801 is in state 'finished'
[2025-07-27 09:30:59] 2025-07-27 13:30:24,449 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 09:30:59] 2025-07-27 13:30:26,357 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 09:30:59] 2025-07-27 13:30:26,364 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2643.509767857143
[2025-07-27 09:30:59] 2025-07-27 13:30:26,373 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6746054801/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 09:30:59] 2025-07-27 13:30:26,374 | INFO     | extracted standard info from prmon json
[2025-07-27 09:30:59] 2025-07-27 13:30:26,375 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 09:30:59] 2025-07-27 13:30:26,375 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 09:30:59] 2025-07-27 13:30:26,375 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 09:30:59] 2025-07-27 13:30:26,375 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 09:30:59] 2025-07-27 13:30:26,377 | INFO     | fitting pss+swap vs Time
[2025-07-27 09:30:59] 2025-07-27 13:30:26,377 | INFO     | sum of square deviations: 97479037.0
[2025-07-27 09:30:59] 2025-07-27 13:30:26,378 | INFO     | sum of deviations: -7814433303.999999
[2025-07-27 09:30:59] 2025-07-27 13:30:26,378 | INFO     | mean x: 1753620801.5
[2025-07-27 09:30:59] 2025-07-27 13:30:26,378 | INFO     | mean y: 2682356.529411765
[2025-07-27 09:30:59] 2025-07-27 13:30:26,378 | INFO     | -- intersect: 140582167090.5525
[2025-07-27 09:30:59] 2025-07-27 13:30:26,378 | INFO     | intersect: 140582167090.5525
[2025-07-27 09:30:59] 2025-07-27 13:30:26,378 | INFO     | chi2: 0.16438248372945802
[2025-07-27 09:30:59] 2025-07-27 13:30:26,378 | INFO     | -- intersect: 140582167090.5525
[2025-07-27 09:30:59] 2025-07-27 13:30:26,378 | INFO     | current memory leak: -80.17 B/s (using 68 data points, chi2=0.16)
[2025-07-27 09:30:59] 2025-07-27 13:30:26,379 | INFO     | could have reported an average CPU frequency of 2763 MHz (6 samples)
[2025-07-27 09:30:59] 2025-07-27 13:30:26,379 | INFO     | ..............................
[2025-07-27 09:30:59] 2025-07-27 13:30:26,379 | INFO     | . Timing measurements:
[2025-07-27 09:30:59] 2025-07-27 13:30:26,379 | INFO     | . get job = 0 s
[2025-07-27 09:30:59] 2025-07-27 13:30:26,379 | INFO     | . initial setup = 3 s
[2025-07-27 09:30:59] 2025-07-27 13:30:26,379 | INFO     | . payload setup = 8 s
[2025-07-27 09:30:59] 2025-07-27 13:30:26,379 | INFO     | . stage-in = 0 s
[2025-07-27 09:30:59] 2025-07-27 13:30:26,379 | INFO     | . payload execution = 4563 s
[2025-07-27 09:30:59] 2025-07-27 13:30:26,379 | INFO     | . stage-out = 0 s
[2025-07-27 09:30:59] 2025-07-27 13:30:26,379 | INFO     | . log creation = 0 s
[2025-07-27 09:30:59] 2025-07-27 13:30:26,379 | INFO     | ..............................
[2025-07-27 09:30:59] 2025-07-27 13:30:26,458 | INFO     | 
[2025-07-27 09:30:59] 2025-07-27 13:30:26,458 | INFO     | job summary report
[2025-07-27 09:30:59] 2025-07-27 13:30:26,458 | INFO     | --------------------------------------------------
[2025-07-27 09:30:59] 2025-07-27 13:30:26,458 | INFO     | PanDA job id: 6746054801
[2025-07-27 09:30:59] 2025-07-27 13:30:26,458 | INFO     | task id: 45758358
[2025-07-27 09:30:59] 2025-07-27 13:30:26,458 | INFO     | errors: (none)
[2025-07-27 09:30:59] 2025-07-27 13:30:26,458 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 09:30:59] 2025-07-27 13:30:26,458 | INFO     | pilot state: finished 
[2025-07-27 09:30:59] 2025-07-27 13:30:26,458 | INFO     | transexitcode: 0
[2025-07-27 09:30:59] 2025-07-27 13:30:26,458 | INFO     | exeerrorcode: 0
[2025-07-27 09:30:59] 2025-07-27 13:30:26,458 | INFO     | exeerrordiag: 
[2025-07-27 09:30:59] 2025-07-27 13:30:26,458 | INFO     | exitcode: 0
[2025-07-27 09:30:59] 2025-07-27 13:30:26,458 | INFO     | exitmsg: OK
[2025-07-27 09:30:59] 2025-07-27 13:30:26,458 | INFO     | cpuconsumptiontime: 48940 s
[2025-07-27 09:30:59] 2025-07-27 13:30:26,458 | INFO     | nevents: 400
[2025-07-27 09:30:59] 2025-07-27 13:30:26,458 | INFO     | neventsw: 0
[2025-07-27 09:30:59] 2025-07-27 13:30:26,458 | INFO     | pid: 3390904
[2025-07-27 09:30:59] 2025-07-27 13:30:26,459 | INFO     | pgrp: 3390904
[2025-07-27 09:30:59] 2025-07-27 13:30:26,459 | INFO     | corecount: 12
[2025-07-27 09:30:59] 2025-07-27 13:30:26,459 | INFO     | event service: False
[2025-07-27 09:30:59] 2025-07-27 13:30:26,459 | INFO     | sizes: {0: 2397249, 1: 2397448, 6: 2397710, 12: 2397738, 4576: 2423782, 4577: 2432780, 4580: 2432964, 4588: 2433158}
[2025-07-27 09:30:59] 2025-07-27 13:30:26,459 | INFO     | --------------------------------------------------
[2025-07-27 09:30:59] 2025-07-27 13:30:26,459 | INFO     | 
[2025-07-27 09:30:59] 2025-07-27 13:30:26,459 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 09:30:59] 2025-07-27 13:30:26,481 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 09:30:59] 2025-07-27 13:30:26,481 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 09:30:59] 2025-07-27 13:30:26,481 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 09:30:59] 2025-07-27 13:30:26,481 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 09:30:59] 2025-07-27 13:30:26,482 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 09:30:59] 2025-07-27 13:30:26,482 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 09:30:59] 2025-07-27 13:30:26,482 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 09:30:59] 2025-07-27 13:30:26,482 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 09:30:59] 2025-07-27 13:30:26,482 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 09:30:59] 2025-07-27 13:30:26,482 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 09:30:59] 2025-07-27 13:30:26,482 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 09:30:59] 2025-07-27 13:30:26,482 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 09:30:59] 2025-07-27 13:30:26,482 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 09:30:59] 2025-07-27 13:30:26,482 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 09:30:59] 2025-07-27 13:30:26,482 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 09:30:59] 2025-07-27 13:30:26,483 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 09:30:59] 2025-07-27 13:30:26,483 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 09:30:59] 2025-07-27 13:30:26,483 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 09:30:59] 2025-07-27 13:30:26,483 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 09:30:59] 2025-07-27 13:30:26,483 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 09:30:59] 2025-07-27 13:30:26,483 | INFO     | job 6746054801 has completed (purged errors)
[2025-07-27 09:30:59] 2025-07-27 13:30:26,483 | INFO     | overall cleanup function is called
[2025-07-27 09:30:59] 2025-07-27 13:30:27,491 | INFO     | --- collectZombieJob: --- 10, [3390904]
[2025-07-27 09:30:59] 2025-07-27 13:30:27,491 | INFO     | zombie collector waiting for pid 3390904
[2025-07-27 09:30:59] 2025-07-27 13:30:27,491 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 09:30:59] 2025-07-27 13:30:27,492 | INFO     | collected zombie processes
[2025-07-27 09:30:59] 2025-07-27 13:30:27,492 | INFO     | will attempt to kill all subprocesses of pid=3390904
[2025-07-27 09:30:59] 2025-07-27 13:30:27,766 | INFO     | process IDs to be killed: [3390904] (in reverse order)
[2025-07-27 09:30:59] 2025-07-27 13:30:27,858 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 09:30:59] 2025-07-27 13:30:27,858 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 09:30:59] 2025-07-27 13:30:27,869 | INFO     | did not find any defunct processes belonging to 3390904
[2025-07-27 09:30:59] 2025-07-27 13:30:27,880 | INFO     | did not find any defunct processes belonging to 3390904
[2025-07-27 09:30:59] 2025-07-27 13:30:27,880 | INFO     | ready for new job
[2025-07-27 09:30:59] 2025-07-27 13:30:27,880 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 09:30:59] 2025-07-27 13:30:27,882 | INFO     | ***************************************
[2025-07-27 09:30:59] 2025-07-27 13:30:27,882 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 09:30:59] 2025-07-27 13:30:27,882 | INFO     | ***************************************
[2025-07-27 09:30:59] 2025-07-27 13:30:27,882 | INFO     | 
[2025-07-27 09:30:59] 2025-07-27 13:30:27,898 | INFO     | architecture information:
[2025-07-27 09:30:59] 2025-07-27 13:30:27,899 | INFO     | executing command: cat /etc/os-release
[2025-07-27 09:30:59] 2025-07-27 13:30:27,915 | INFO     | cat /etc/os-release:
[2025-07-27 09:30:59] NAME="CentOS Linux"
[2025-07-27 09:30:59] VERSION="7 (Core)"
[2025-07-27 09:30:59] ID="centos"
[2025-07-27 09:30:59] ID_LIKE="rhel fedora"
[2025-07-27 09:30:59] VERSION_ID="7"
[2025-07-27 09:30:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 09:30:59] ANSI_COLOR="0;31"
[2025-07-27 09:30:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 09:30:59] HOME_URL="https://www.centos.org/"
[2025-07-27 09:30:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 09:30:59] 
[2025-07-27 09:30:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 09:30:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 09:30:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 09:30:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 09:30:59] 
[2025-07-27 09:30:59] 2025-07-27 13:30:27,915 | INFO     | ***************************************
[2025-07-27 09:30:59] 2025-07-27 13:30:28,418 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 09:30:59] 2025-07-27 13:30:28,437 | INFO     | sufficient remaining disk space (76321652736 B)
[2025-07-27 09:30:59] 2025-07-27 13:30:28,437 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 09:30:59] 2025-07-27 13:30:28,437 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 09:30:59] 2025-07-27 13:30:28,438 | INFO     | update_server=False
[2025-07-27 09:30:59] 2025-07-27 13:30:28,438 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 09:30:59] 2025-07-27 13:30:28,438 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 09:30:59] 2025-07-27 13:30:28,438 | INFO     | aborting loop
[2025-07-27 09:30:59] 2025-07-27 13:30:28,438 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 09:30:59] 2025-07-27 13:30:28,662 | INFO     | all job control threads have been joined
[2025-07-27 09:30:59] 2025-07-27 13:30:29,054 | INFO     | all data control threads have been joined
[2025-07-27 09:30:59] 2025-07-27 13:30:29,101 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 09:30:59] 2025-07-27 13:30:29,169 | INFO     | all payload control threads have been joined
[2025-07-27 09:30:59] 2025-07-27 13:30:29,443 | INFO     | [job] retrieve thread has finished
[2025-07-27 09:30:59] 2025-07-27 13:30:29,444 | INFO     | [job] queue monitor thread has finished
[2025-07-27 09:30:59] 2025-07-27 13:30:29,445 | INFO     | [job] job monitor thread has finished
[2025-07-27 09:30:59] 2025-07-27 13:30:29,586 | INFO     | [job] validate thread has finished
[2025-07-27 09:30:59] 2025-07-27 13:30:29,667 | INFO     | [job] control thread has finished
[2025-07-27 09:30:59] 2025-07-27 13:30:29,789 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 09:30:59] 2025-07-27 13:30:30,017 | INFO     | [payload] failed_post thread has finished
[2025-07-27 09:30:59] 2025-07-27 13:30:30,027 | INFO     | [payload] validate_post thread has finished
[2025-07-27 09:30:59] 2025-07-27 13:30:30,060 | INFO     | [data] control thread has finished
[2025-07-27 09:30:59] 2025-07-27 13:30:30,111 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 09:30:59] 2025-07-27 13:30:30,174 | INFO     | [payload] control thread has finished
[2025-07-27 09:30:59] 2025-07-27 13:30:30,475 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 09:30:59] 2025-07-27 13:30:30,694 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 09:30:59] 2025-07-27 13:30:30,793 | INFO     | [data] copytool_in thread has finished
[2025-07-27 09:30:59] 2025-07-27 13:30:31,106 | INFO     | [data] copytool_out thread has finished
[2025-07-27 09:30:59] 2025-07-27 13:30:33,795 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 09:30:59] 2025-07-27 13:30:39,052 | INFO     | job.realtimelogging is not enabled
[2025-07-27 09:30:59] 2025-07-27 13:30:40,057 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 09:30:59] 2025-07-27 13:30:42,014 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140213430519616)>', '<ExcThread(monitor, started 140212940293888)>']
[2025-07-27 09:30:59] 2025-07-27 13:30:47,039 | INFO     | all workflow threads have been joined
[2025-07-27 09:30:59] 2025-07-27 13:30:47,040 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 09:30:59] 2025-07-27 13:30:47,040 | INFO     | traces error code: 0
[2025-07-27 09:30:59] 2025-07-27 13:30:47,040 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 09:30:59] 2025-07-27 13:30:59,500 | INFO     | PID=3384294 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 09:30:59] 2025-07-27 13:30:59,501 | INFO     | .. there are 11 such processes running
[2025-07-27 09:30:59] 2025-07-27 13:30:59,502 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 09:30:59] 2025-07-27 13:30:59,502 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 09:30:59] 2025-07-27 13:30:59,502 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 09:30:59] 2025-07-27 13:30:59,502 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 09:30:59] 2025-07-27 13:30:59,502 | INFO     | [monitor] control thread has ended
[2025-07-27 09:30:59] 2025-07-27 13:30:59,684 [wrapper] ==== pilot stdout END ====
[2025-07-27 09:30:59] 2025-07-27 13:30:59,689 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 09:30:59] 2025-07-27 13:30:59,693 [wrapper] pilotpid: 3384294
[2025-07-27 09:30:59] 2025-07-27 13:30:59,697 [wrapper] Pilot exit status: 0
[2025-07-27 09:30:59] 2025-07-27 13:30:59,715 [wrapper] pandaids: 6746054801
[2025-07-27 09:30:59] 2025-07-27 13:30:59,786 [wrapper] cleanup supervisor_pilot 3711236 3384295
[2025-07-27 09:30:59] 2025-07-27 13:30:59,790 [wrapper] Test setup, not cleaning
[2025-07-27 09:30:59] 2025-07-27 13:30:59,795 [wrapper] apfmon messages muted
[2025-07-27 09:30:59] 2025-07-27 13:30:59,798 [wrapper] ==== wrapper stdout END ====
[2025-07-27 09:30:59] 2025-07-27 13:30:59,803 [wrapper] ==== wrapper stderr END ====
[2025-07-27 09:30:59]  *** Error codes and diagnostics ***
[2025-07-27 09:30:59]     "exeErrorCode": 0,
[2025-07-27 09:30:59]     "exeErrorDiag": "",
[2025-07-27 09:30:59]     "pilotErrorCode": 0,
[2025-07-27 09:30:59]     "pilotErrorDiag": "",
[2025-07-27 09:30:59]  *** Listing of results directory ***
[2025-07-27 09:30:59] total 407200
[2025-07-27 09:30:59] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 01:07 pilot3.tar.gz
[2025-07-27 09:30:59] -rwx------. 1 boincer umatlas     36292 Jul 27 01:22 runpilot2-wrapper.sh
[2025-07-27 09:30:59] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 01:22 queuedata.json
[2025-07-27 09:30:59] -rw-r--r--. 1 boincer umatlas       100 Jul 27 08:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 09:30:59] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 08:13 run_atlas
[2025-07-27 09:30:59] -rw-r--r--. 1 boincer umatlas       105 Jul 27 08:13 job.xml
[2025-07-27 09:30:59] -rw-r--r--. 2 boincer umatlas 240830824 Jul 27 08:13 EVNT.45758356._000005.pool.root.1
[2025-07-27 09:30:59] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 08:13 start_atlas.sh
[2025-07-27 09:30:59] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 08:13 shared
[2025-07-27 09:30:59] -rw-r--r--. 2 boincer umatlas    542877 Jul 27 08:13 input.tar.gz
[2025-07-27 09:30:59] -rw-r--r--. 1 boincer umatlas         0 Jul 27 08:13 boinc_lockfile
[2025-07-27 09:30:59] -rw-r--r--. 1 boincer umatlas      2562 Jul 27 08:13 pandaJob.out
[2025-07-27 09:30:59] -rw-------. 1 boincer umatlas    980109 Jul 27 08:13 agis_schedconf.cvmfs.json
[2025-07-27 09:30:59] -rw-------. 1 boincer umatlas   1593052 Jul 27 08:13 agis_ddmendpoints.agis.ALL.json
[2025-07-27 09:30:59] drwx------. 4 boincer umatlas      4096 Jul 27 08:13 pilot3
[2025-07-27 09:30:59] -rw-r--r--. 1 boincer umatlas      6841 Jul 27 09:29 init_data.xml
[2025-07-27 09:30:59] -rw-r--r--. 1 boincer umatlas       530 Jul 27 09:29 boinc_task_state.xml
[2025-07-27 09:30:59] -rw-------. 1 boincer umatlas 170648254 Jul 27 09:29 HITS.45758358._000103.pool.root.1
[2025-07-27 09:30:59] -rw-------. 1 boincer umatlas        95 Jul 27 09:30 pilot_heartbeat.json
[2025-07-27 09:30:59] -rw-------. 1 boincer umatlas      1040 Jul 27 09:30 memory_monitor_summary.json
[2025-07-27 09:30:59] -rw-------. 1 boincer umatlas    352630 Jul 27 09:30 log.45758358._000103.job.log.tgz.1
[2025-07-27 09:30:59] -rw-------. 1 boincer umatlas      7816 Jul 27 09:30 heartbeat.json
[2025-07-27 09:30:59] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 09:30 boinc_mmap_file
[2025-07-27 09:30:59] -rw-r--r--. 1 boincer umatlas        27 Jul 27 09:30 wrapper_checkpoint.txt
[2025-07-27 09:30:59] -rw-------. 1 boincer umatlas       823 Jul 27 09:30 pilotlog.txt
[2025-07-27 09:30:59] -rw-------. 1 boincer umatlas    453211 Jul 27 09:30 log.45758358._000103.job.log.1
[2025-07-27 09:30:59] -rw-------. 1 boincer umatlas       357 Jul 27 09:30 output.list
[2025-07-27 09:30:59] -rw-r--r--. 1 boincer umatlas       620 Jul 27 09:30 runtime_log
[2025-07-27 09:30:59] -rw-------. 1 boincer umatlas    829440 Jul 27 09:30 result.tar.gz
[2025-07-27 09:30:59] -rw-------. 1 boincer umatlas       655 Jul 27 09:30 ZkRLDmP18z7n9Rq4apOajLDm4fhM0noT9bVof3QYDmV01KDmYPFsGm.diag
[2025-07-27 09:30:59] -rw-r--r--. 1 boincer umatlas      8662 Jul 27 09:30 runtime_log.err
[2025-07-27 09:30:59] -rw-r--r--. 1 boincer umatlas     21838 Jul 27 09:30 stderr.txt
[2025-07-27 09:30:59] HITS file was successfully produced:
[2025-07-27 09:30:59] -rw-------. 1 boincer umatlas 170648254 Jul 27 09:29 shared/HITS.pool.root.1
[2025-07-27 09:30:59]  *** Contents of shared directory: ***
[2025-07-27 09:30:59] total 403204
[2025-07-27 09:30:59] -rw-r--r--. 2 boincer umatlas 240830824 Jul 27 08:13 ATLAS.root_0
[2025-07-27 09:30:59] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 08:13 start_atlas.sh
[2025-07-27 09:30:59] -rw-r--r--. 2 boincer umatlas    542877 Jul 27 08:13 input.tar.gz
[2025-07-27 09:30:59] -rw-------. 1 boincer umatlas 170648254 Jul 27 09:29 HITS.pool.root.1
[2025-07-27 09:30:59] -rw-------. 1 boincer umatlas    829440 Jul 27 09:30 result.tar.gz
09:31:01 (3379410): run_atlas exited; CPU time 48960.660525
09:31:01 (3379410): called boinc_finish(0)

</stderr_txt>
]]>

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