Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:27:39 (272986): wrapper (7.7.26015): starting
06:27:39 (272986): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 06:27:39] Arguments: --nthreads 8
[2025-07-27 06:27:39] Threads: 8
[2025-07-27 06:27:39] Checking for CVMFS
[2025-07-27 06:27:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 06:27:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 06:27:40] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 06:27:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 06:27:40] 2.13.1.0 672044 14036 151556 148809 3 196 24456914 40960001 9430 16776704 0 40533140 99.877 26249300 43599 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 06:27:40] CVMFS is ok
[2025-07-27 06:27:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 06:27:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 06:27:40] Further information can be found at the LHC@home message board.
[2025-07-27 06:27:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 06:27:40] Checking for apptainer binary...
[2025-07-27 06:27:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 06:27:40] Running /usr/bin/apptainer --version
[2025-07-27 06:27:40] apptainer version 1.4.1-1.el9
[2025-07-27 06:27:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 06:27:40] c-212-3.aglt2.org
[2025-07-27 06:27:40] apptainer works
[2025-07-27 06:27:40] Set ATHENA_PROC_NUMBER=8
[2025-07-27 06:27:40] Set ATHENA_CORE_NUMBER=8
[2025-07-27 06:27:40] Starting ATLAS job with PandaID=6745925251
[2025-07-27 06:27:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 07:57:12]  *** The last 200 lines of the pilot log: ***
[2025-07-27 07:57:12]  mtime=0
[2025-07-27 07:57:12]  protocol_id=None
[2025-07-27 07:57:12]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 07:57:12]  replicas=None
[2025-07-27 07:57:12]  scope=mc23_13p6TeV
[2025-07-27 07:57:12]  status=None
[2025-07-27 07:57:12]  status_code=0
[2025-07-27 07:57:12]  storage_token=
[2025-07-27 07:57:12]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6745925251/log.45758730._000058.job.log.tgz.1
[2025-07-27 07:57:12]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4d/32/log.45758730._000058.job.log.tgz.1
[2025-07-27 07:57:12]  workdir=None
[2025-07-27 07:57:12] ]
[2025-07-27 07:57:12] 2025-07-27 11:56:30,947 | INFO     | transferring file log.45758730._000058.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6745925251/log.45758730._000058.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 07:57:12] 2025-07-27 11:56:30,947 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6745925251/log.45758730._000058.job.log.tgz.1 /tmp/boinchome/slots/2/log.45758730._000058.job
[2025-07-27 07:57:12] 2025-07-27 11:56:30,973 | INFO     | adding to output.list: log.45758730._000058.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4d/32/log.45758730._000058.job.log.tg
[2025-07-27 07:57:12] 2025-07-27 11:56:30,974 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 07:57:12] 2025-07-27 11:56:30,974 | INFO     | summary of transferred files:
[2025-07-27 07:57:12] 2025-07-27 11:56:30,974 | INFO     |  -- lfn=log.45758730._000058.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 07:57:12] 2025-07-27 11:56:30,975 | INFO     | stage-out finished correctly
[2025-07-27 07:57:12] 2025-07-27 11:56:31,094 | INFO     | monitor loop #391: job 0:6745925251 is in state 'finished'
[2025-07-27 07:57:12] 2025-07-27 11:56:31,094 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 07:57:12] 2025-07-27 11:56:33,597 | INFO     | monitor loop #392: job 0:6745925251 is in state 'finished'
[2025-07-27 07:57:12] 2025-07-27 11:56:33,597 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 07:57:12] 2025-07-27 11:56:33,686 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 07:57:12] 2025-07-27 11:56:35,051 | INFO     | job 6745925251 has state=finished
[2025-07-27 07:57:12] 2025-07-27 11:56:35,051 | INFO     | preparing for final server update for job 6745925251 in state='finished'
[2025-07-27 07:57:12] 2025-07-27 11:56:35,051 | INFO     | this job has now completed (state=finished)
[2025-07-27 07:57:12] 2025-07-27 11:56:35,052 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 07:57:12] 2025-07-27 11:56:35,052 | INFO     | log transfer has been attempted: DONE
[2025-07-27 07:57:12] 2025-07-27 11:56:35,052 | INFO     | job 6745925251 has finished - writing final server update
[2025-07-27 07:57:12] 2025-07-27 11:56:35,052 | INFO     | total number of processed events: 400 (read)
[2025-07-27 07:57:12] 2025-07-27 11:56:35,053 | INFO     | executing command: lscpu
[2025-07-27 07:57:12] 2025-07-27 11:56:35,104 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 07:57:12] 2025-07-27 11:56:36,100 | INFO     | monitor loop #393: job 0:6745925251 is in state 'finished'
[2025-07-27 07:57:12] 2025-07-27 11:56:36,100 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 07:57:12] 2025-07-27 11:56:38,603 | INFO     | monitor loop #394: job 0:6745925251 is in state 'finished'
[2025-07-27 07:57:12] 2025-07-27 11:56:38,604 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 07:57:12] 2025-07-27 11:56:40,239 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 07:57:12] 2025-07-27 11:56:40,244 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3367.4404791666675
[2025-07-27 07:57:12] 2025-07-27 11:56:40,257 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6745925251/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 07:57:12] 2025-07-27 11:56:40,258 | INFO     | extracted standard info from prmon json
[2025-07-27 07:57:12] 2025-07-27 11:56:40,258 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 07:57:12] 2025-07-27 11:56:40,258 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 07:57:12] 2025-07-27 11:56:40,258 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 07:57:12] 2025-07-27 11:56:40,259 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 07:57:12] 2025-07-27 11:56:40,260 | INFO     | fitting pss+swap vs Time
[2025-07-27 07:57:12] 2025-07-27 11:56:40,260 | INFO     | sum of square deviations: 158737860.0
[2025-07-27 07:57:12] 2025-07-27 11:56:40,261 | INFO     | sum of deviations: -720459776.0
[2025-07-27 07:57:12] 2025-07-27 11:56:40,261 | INFO     | mean x: 1753614812.5
[2025-07-27 07:57:12] 2025-07-27 11:56:40,261 | INFO     | mean y: 2553363.075
[2025-07-27 07:57:12] 2025-07-27 11:56:40,261 | INFO     | -- intersect: 7961643494.465406
[2025-07-27 07:57:12] 2025-07-27 11:56:40,261 | INFO     | intersect: 7961643494.465406
[2025-07-27 07:57:12] 2025-07-27 11:56:40,261 | INFO     | chi2: 0.0026126840109961243
[2025-07-27 07:57:12] 2025-07-27 11:56:40,261 | INFO     | -- intersect: 7961643494.465406
[2025-07-27 07:57:12] 2025-07-27 11:56:40,261 | INFO     | current memory leak: -4.54 B/s (using 80 data points, chi2=0.00)
[2025-07-27 07:57:12] 2025-07-27 11:56:40,262 | INFO     | could have reported an average CPU frequency of 3325 MHz (6 samples)
[2025-07-27 07:57:12] 2025-07-27 11:56:40,262 | INFO     | ..............................
[2025-07-27 07:57:12] 2025-07-27 11:56:40,262 | INFO     | . Timing measurements:
[2025-07-27 07:57:12] 2025-07-27 11:56:40,262 | INFO     | . get job = 0 s
[2025-07-27 07:57:12] 2025-07-27 11:56:40,262 | INFO     | . initial setup = 2 s
[2025-07-27 07:57:12] 2025-07-27 11:56:40,262 | INFO     | . payload setup = 6 s
[2025-07-27 07:57:12] 2025-07-27 11:56:40,262 | INFO     | . stage-in = 0 s
[2025-07-27 07:57:12] 2025-07-27 11:56:40,262 | INFO     | . payload execution = 5292 s
[2025-07-27 07:57:12] 2025-07-27 11:56:40,262 | INFO     | . stage-out = 0 s
[2025-07-27 07:57:12] 2025-07-27 11:56:40,262 | INFO     | . log creation = 0 s
[2025-07-27 07:57:12] 2025-07-27 11:56:40,262 | INFO     | ..............................
[2025-07-27 07:57:12] 2025-07-27 11:56:40,399 | INFO     | 
[2025-07-27 07:57:12] 2025-07-27 11:56:40,399 | INFO     | job summary report
[2025-07-27 07:57:12] 2025-07-27 11:56:40,399 | INFO     | --------------------------------------------------
[2025-07-27 07:57:12] 2025-07-27 11:56:40,399 | INFO     | PanDA job id: 6745925251
[2025-07-27 07:57:12] 2025-07-27 11:56:40,399 | INFO     | task id: 45758730
[2025-07-27 07:57:12] 2025-07-27 11:56:40,400 | INFO     | errors: (none)
[2025-07-27 07:57:12] 2025-07-27 11:56:40,400 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 07:57:12] 2025-07-27 11:56:40,400 | INFO     | pilot state: finished 
[2025-07-27 07:57:12] 2025-07-27 11:56:40,400 | INFO     | transexitcode: 0
[2025-07-27 07:57:12] 2025-07-27 11:56:40,400 | INFO     | exeerrorcode: 0
[2025-07-27 07:57:12] 2025-07-27 11:56:40,400 | INFO     | exeerrordiag: 
[2025-07-27 07:57:12] 2025-07-27 11:56:40,400 | INFO     | exitcode: 0
[2025-07-27 07:57:12] 2025-07-27 11:56:40,400 | INFO     | exitmsg: OK
[2025-07-27 07:57:12] 2025-07-27 11:56:40,400 | INFO     | cpuconsumptiontime: 37500 s
[2025-07-27 07:57:12] 2025-07-27 11:56:40,400 | INFO     | nevents: 400
[2025-07-27 07:57:12] 2025-07-27 11:56:40,400 | INFO     | neventsw: 0
[2025-07-27 07:57:12] 2025-07-27 11:56:40,401 | INFO     | pid: 288846
[2025-07-27 07:57:12] 2025-07-27 11:56:40,401 | INFO     | pgrp: 288846
[2025-07-27 07:57:12] 2025-07-27 11:56:40,401 | INFO     | corecount: 8
[2025-07-27 07:57:12] 2025-07-27 11:56:40,401 | INFO     | event service: False
[2025-07-27 07:57:12] 2025-07-27 11:56:40,401 | INFO     | sizes: {0: 2397302, 1: 2397501, 5: 2397763, 11: 2397819, 5303: 2424235, 5305: 2433233, 5308: 2433417, 5314: 2433611}
[2025-07-27 07:57:12] 2025-07-27 11:56:40,401 | INFO     | --------------------------------------------------
[2025-07-27 07:57:12] 2025-07-27 11:56:40,401 | INFO     | 
[2025-07-27 07:57:12] 2025-07-27 11:56:40,401 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-07-27 07:57:12] 2025-07-27 11:56:40,430 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 07:57:12] 2025-07-27 11:56:40,431 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 07:57:12] 2025-07-27 11:56:40,431 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 07:57:12] 2025-07-27 11:56:40,431 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 07:57:12] 2025-07-27 11:56:40,431 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 07:57:12] 2025-07-27 11:56:40,431 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 07:57:12] 2025-07-27 11:56:40,431 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 07:57:12] 2025-07-27 11:56:40,431 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 07:57:12] 2025-07-27 11:56:40,431 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 07:57:12] 2025-07-27 11:56:40,431 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 07:57:12] 2025-07-27 11:56:40,431 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 07:57:12] 2025-07-27 11:56:40,431 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 07:57:12] 2025-07-27 11:56:40,431 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 07:57:12] 2025-07-27 11:56:40,432 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 07:57:12] 2025-07-27 11:56:40,432 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 07:57:12] 2025-07-27 11:56:40,432 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 07:57:12] 2025-07-27 11:56:40,432 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 07:57:12] 2025-07-27 11:56:40,432 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 07:57:12] 2025-07-27 11:56:40,432 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 07:57:12] 2025-07-27 11:56:40,432 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 07:57:12] 2025-07-27 11:56:40,432 | INFO     | job 6745925251 has completed (purged errors)
[2025-07-27 07:57:12] 2025-07-27 11:56:40,432 | INFO     | overall cleanup function is called
[2025-07-27 07:57:12] 2025-07-27 11:56:41,441 | INFO     | --- collectZombieJob: --- 10, [288846]
[2025-07-27 07:57:12] 2025-07-27 11:56:41,441 | INFO     | zombie collector waiting for pid 288846
[2025-07-27 07:57:12] 2025-07-27 11:56:41,441 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 07:57:12] 2025-07-27 11:56:41,441 | INFO     | collected zombie processes
[2025-07-27 07:57:12] 2025-07-27 11:56:41,442 | INFO     | will attempt to kill all subprocesses of pid=288846
[2025-07-27 07:57:12] 2025-07-27 11:56:41,792 | INFO     | process IDs to be killed: [288846] (in reverse order)
[2025-07-27 07:57:12] 2025-07-27 11:56:41,887 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 07:57:12] 2025-07-27 11:56:41,887 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 07:57:12] 2025-07-27 11:56:41,899 | INFO     | did not find any defunct processes belonging to 288846
[2025-07-27 07:57:12] 2025-07-27 11:56:41,906 | INFO     | did not find any defunct processes belonging to 288846
[2025-07-27 07:57:12] 2025-07-27 11:56:41,907 | INFO     | ready for new job
[2025-07-27 07:57:12] 2025-07-27 11:56:41,907 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 07:57:12] 2025-07-27 11:56:41,908 | INFO     | ***************************************
[2025-07-27 07:57:12] 2025-07-27 11:56:41,908 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 07:57:12] 2025-07-27 11:56:41,908 | INFO     | ***************************************
[2025-07-27 07:57:12] 2025-07-27 11:56:41,909 | INFO     | 
[2025-07-27 07:57:12] 2025-07-27 11:56:41,913 | INFO     | architecture information:
[2025-07-27 07:57:12] 2025-07-27 11:56:41,913 | INFO     | executing command: cat /etc/os-release
[2025-07-27 07:57:12] 2025-07-27 11:56:41,935 | INFO     | cat /etc/os-release:
[2025-07-27 07:57:12] NAME="CentOS Linux"
[2025-07-27 07:57:12] VERSION="7 (Core)"
[2025-07-27 07:57:12] ID="centos"
[2025-07-27 07:57:12] ID_LIKE="rhel fedora"
[2025-07-27 07:57:12] VERSION_ID="7"
[2025-07-27 07:57:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 07:57:12] ANSI_COLOR="0;31"
[2025-07-27 07:57:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 07:57:12] HOME_URL="https://www.centos.org/"
[2025-07-27 07:57:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 07:57:12] 
[2025-07-27 07:57:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 07:57:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 07:57:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 07:57:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 07:57:12] 
[2025-07-27 07:57:12] 2025-07-27 11:56:41,935 | INFO     | ***************************************
[2025-07-27 07:57:12] 2025-07-27 11:56:42,438 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-07-27 07:57:12] 2025-07-27 11:56:42,455 | INFO     | sufficient remaining disk space (123283177472 B)
[2025-07-27 07:57:12] 2025-07-27 11:56:42,456 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 07:57:12] 2025-07-27 11:56:42,456 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 07:57:12] 2025-07-27 11:56:42,456 | INFO     | update_server=False
[2025-07-27 07:57:12] 2025-07-27 11:56:42,456 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 07:57:12] 2025-07-27 11:56:42,456 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 07:57:12] 2025-07-27 11:56:42,456 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 07:57:12] 2025-07-27 11:56:42,456 | INFO     | aborting loop
[2025-07-27 07:57:12] 2025-07-27 11:56:42,587 | INFO     | all data control threads have been joined
[2025-07-27 07:57:12] 2025-07-27 11:56:42,606 | INFO     | all job control threads have been joined
[2025-07-27 07:57:12] 2025-07-27 11:56:42,649 | INFO     | all payload control threads have been joined
[2025-07-27 07:57:12] 2025-07-27 11:56:43,461 | INFO     | [job] retrieve thread has finished
[2025-07-27 07:57:12] 2025-07-27 11:56:43,461 | INFO     | [job] job monitor thread has finished
[2025-07-27 07:57:12] 2025-07-27 11:56:43,474 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 07:57:12] 2025-07-27 11:56:43,592 | INFO     | [data] control thread has finished
[2025-07-27 07:57:12] 2025-07-27 11:56:43,611 | INFO     | [job] control thread has finished
[2025-07-27 07:57:12] 2025-07-27 11:56:43,654 | INFO     | [payload] control thread has finished
[2025-07-27 07:57:12] 2025-07-27 11:56:43,961 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 07:57:12] 2025-07-27 11:56:44,268 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 07:57:12] 2025-07-27 11:56:44,311 | INFO     | [job] validate thread has finished
[2025-07-27 07:57:12] 2025-07-27 11:56:44,461 | INFO     | [data] copytool_out thread has finished
[2025-07-27 07:57:12] 2025-07-27 11:56:44,497 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 07:57:12] 2025-07-27 11:56:44,600 | INFO     | [payload] validate_post thread has finished
[2025-07-27 07:57:12] 2025-07-27 11:56:44,637 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 07:57:12] 2025-07-27 11:56:44,699 | INFO     | [data] copytool_in thread has finished
[2025-07-27 07:57:12] 2025-07-27 11:56:44,966 | INFO     | [payload] failed_post thread has finished
[2025-07-27 07:57:12] 2025-07-27 11:56:45,349 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 07:57:12] 2025-07-27 11:56:46,355 | INFO     | [job] queue monitor thread has finished
[2025-07-27 07:57:12] 2025-07-27 11:56:48,274 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 07:57:12] 2025-07-27 11:56:48,920 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139995888387904)>', '<ExcThread(monitor, started 139995247531776)>']
[2025-07-27 07:57:12] 2025-07-27 11:56:53,938 | INFO     | all workflow threads have been joined
[2025-07-27 07:57:12] 2025-07-27 11:56:53,938 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 07:57:12] 2025-07-27 11:56:53,938 | INFO     | traces error code: 0
[2025-07-27 07:57:12] 2025-07-27 11:56:53,939 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 07:57:12] 2025-07-27 11:57:12,597 | INFO     | PID=276585 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 07:57:12] 2025-07-27 11:57:12,597 | INFO     | .. there are 14 such processes running
[2025-07-27 07:57:12] 2025-07-27 11:57:12,597 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 07:57:12] 2025-07-27 11:57:12,597 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 07:57:12] 2025-07-27 11:57:12,597 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 07:57:12] 2025-07-27 11:57:12,598 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 07:57:12] 2025-07-27 11:57:12,598 | INFO     | [monitor] control thread has ended
[2025-07-27 07:57:12] 2025-07-27 11:57:12,690 [wrapper] ==== pilot stdout END ====
[2025-07-27 07:57:12] 2025-07-27 11:57:12,693 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 07:57:12] 2025-07-27 11:57:12,696 [wrapper] pilotpid: 276585
[2025-07-27 07:57:12] 2025-07-27 11:57:12,699 [wrapper] Pilot exit status: 0
[2025-07-27 07:57:12] 2025-07-27 11:57:12,711 [wrapper] pandaids: 6745925251
[2025-07-27 07:57:12] 2025-07-27 11:57:12,797 [wrapper] cleanup supervisor_pilot  504820 276586
[2025-07-27 07:57:12] 2025-07-27 11:57:12,801 [wrapper] Test setup, not cleaning
[2025-07-27 07:57:12] 2025-07-27 11:57:12,806 [wrapper] apfmon messages muted
[2025-07-27 07:57:12] 2025-07-27 11:57:12,811 [wrapper] ==== wrapper stdout END ====
[2025-07-27 07:57:12] 2025-07-27 11:57:12,816 [wrapper] ==== wrapper stderr END ====
[2025-07-27 07:57:12]  *** Error codes and diagnostics ***
[2025-07-27 07:57:12]     "exeErrorCode": 0,
[2025-07-27 07:57:12]     "exeErrorDiag": "",
[2025-07-27 07:57:12]     "pilotErrorCode": 0,
[2025-07-27 07:57:12]     "pilotErrorDiag": "",
[2025-07-27 07:57:12]  *** Listing of results directory ***
[2025-07-27 07:57:12] total 419640
[2025-07-27 07:57:12] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 20:36 pilot3.tar.gz
[2025-07-27 07:57:12] -rwx------. 1 boincer umatlas     36292 Jul 26 20:56 runpilot2-wrapper.sh
[2025-07-27 07:57:12] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 20:56 queuedata.json
[2025-07-27 07:57:12] -rw-r--r--. 1 boincer umatlas       100 Jul 27 06:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 07:57:12] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 06:27 run_atlas
[2025-07-27 07:57:12] -rw-r--r--. 1 boincer umatlas       105 Jul 27 06:27 job.xml
[2025-07-27 07:57:12] -rw-r--r--. 2 boincer umatlas 241879309 Jul 27 06:27 EVNT.45758728._000003.pool.root.1
[2025-07-27 07:57:12] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 06:27 start_atlas.sh
[2025-07-27 07:57:12] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 06:27 shared
[2025-07-27 07:57:12] -rw-r--r--. 2 boincer umatlas    542882 Jul 27 06:27 input.tar.gz
[2025-07-27 07:57:12] -rw-r--r--. 1 boincer umatlas         0 Jul 27 06:27 boinc_lockfile
[2025-07-27 07:57:12] -rw-r--r--. 1 boincer umatlas      2566 Jul 27 06:27 pandaJob.out
[2025-07-27 07:57:12] -rw-------. 1 boincer umatlas    980117 Jul 27 06:27 agis_schedconf.cvmfs.json
[2025-07-27 07:57:12] -rw-------. 1 boincer umatlas   1593052 Jul 27 06:27 agis_ddmendpoints.agis.ALL.json
[2025-07-27 07:57:12] drwx------. 4 boincer umatlas      4096 Jul 27 06:27 pilot3
[2025-07-27 07:57:12] -rw-------. 1 boincer umatlas 182316676 Jul 27 07:56 HITS.45758730._000058.pool.root.1
[2025-07-27 07:57:12] -rw-r--r--. 1 boincer umatlas       529 Jul 27 07:56 boinc_task_state.xml
[2025-07-27 07:57:12] -rw-------. 1 boincer umatlas      1024 Jul 27 07:56 memory_monitor_summary.json
[2025-07-27 07:57:12] -rw-------. 1 boincer umatlas    305906 Jul 27 07:56 log.45758730._000058.job.log.tgz.1
[2025-07-27 07:57:12] -rw-------. 1 boincer umatlas      7749 Jul 27 07:56 heartbeat.json
[2025-07-27 07:57:12] -rw-r--r--. 1 boincer umatlas      6945 Jul 27 07:57 init_data.xml
[2025-07-27 07:57:12] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 07:57 boinc_mmap_file
[2025-07-27 07:57:12] -rw-r--r--. 1 boincer umatlas        27 Jul 27 07:57 wrapper_checkpoint.txt
[2025-07-27 07:57:12] -rw-------. 1 boincer umatlas        95 Jul 27 07:57 pilot_heartbeat.json
[2025-07-27 07:57:12] -rw-------. 1 boincer umatlas       822 Jul 27 07:57 pilotlog.txt
[2025-07-27 07:57:12] -rw-------. 1 boincer umatlas    514994 Jul 27 07:57 log.45758730._000058.job.log.1
[2025-07-27 07:57:12] -rw-------. 1 boincer umatlas       357 Jul 27 07:57 output.list
[2025-07-27 07:57:12] -rw-r--r--. 1 boincer umatlas       620 Jul 27 07:57 runtime_log
[2025-07-27 07:57:12] -rw-------. 1 boincer umatlas    839680 Jul 27 07:57 result.tar.gz
[2025-07-27 07:57:12] -rw-------. 1 boincer umatlas       651 Jul 27 07:57 uoeLDmmr4z7n9Rq4apOajLDm4fhM0noT9bVof3QYDmIh1KDmR5UUVm.diag
[2025-07-27 07:57:12] -rw-r--r--. 1 boincer umatlas      8655 Jul 27 07:57 runtime_log.err
[2025-07-27 07:57:12] -rw-r--r--. 1 boincer umatlas     21747 Jul 27 07:57 stderr.txt
[2025-07-27 07:57:12] HITS file was successfully produced:
[2025-07-27 07:57:12] -rw-------. 1 boincer umatlas 182316676 Jul 27 07:56 shared/HITS.pool.root.1
[2025-07-27 07:57:12]  *** Contents of shared directory: ***
[2025-07-27 07:57:12] total 415632
[2025-07-27 07:57:12] -rw-r--r--. 2 boincer umatlas 241879309 Jul 27 06:27 ATLAS.root_0
[2025-07-27 07:57:12] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 06:27 start_atlas.sh
[2025-07-27 07:57:12] -rw-r--r--. 2 boincer umatlas    542882 Jul 27 06:27 input.tar.gz
[2025-07-27 07:57:12] -rw-------. 1 boincer umatlas 182316676 Jul 27 07:56 HITS.pool.root.1
[2025-07-27 07:57:12] -rw-------. 1 boincer umatlas    839680 Jul 27 07:57 result.tar.gz
07:57:14 (272986): run_atlas exited; CPU time 37618.944092
07:57:14 (272986): called boinc_finish(0)

</stderr_txt>
]]>

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