Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:57:29 (3220630): wrapper (7.7.26015): starting
17:57:29 (3220630): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 17:57:29] Arguments: --nthreads 12
[2025-07-27 17:57:29] Threads: 12
[2025-07-27 17:57:29] Checking for CVMFS
[2025-07-27 17:57:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 17:57:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 17:57:29] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 17:57:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 17:57:30] 2.13.1.0 95439 8883 101176 148817 0 57 2629772 4097024 0 130560 0 7362502 99.990 334174 6341 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://188.184.28.244:3128 1
[2025-07-27 17:57:30] CVMFS is ok
[2025-07-27 17:57:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 17:57:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 17:57:30] Further information can be found at the LHC@home message board.
[2025-07-27 17:57:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 17:57:30] Checking for apptainer binary...
[2025-07-27 17:57:30] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2025-07-27 17:57:30] apptainer is not installed, using version from CVMFS
[2025-07-27 17:57:30] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 17:57:30] pckelar5.cern.ch
[2025-07-27 17:57:30] apptainer works
[2025-07-27 17:57:30] Set ATHENA_PROC_NUMBER=12
[2025-07-27 17:57:30] Set ATHENA_CORE_NUMBER=12
[2025-07-27 17:57:30] Starting ATLAS job with PandaID=6745502277
[2025-07-27 17:57:30] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 19:14:42]  *** The last 200 lines of the pilot log: ***
[2025-07-27 19:14:42]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 19:14:42]  replicas=None
[2025-07-27 19:14:42]  scope=mc23_13p6TeV
[2025-07-27 19:14:42]  status=None
[2025-07-27 19:14:42]  status_code=0
[2025-07-27 19:14:42]  storage_token=
[2025-07-27 19:14:42]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-6745502277/log.45743349._043806.job.log.tgz.1
[2025-07-27 19:14:42]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e8/67/log.45743349._043806.job.log.tgz.1
[2025-07-27 19:14:42]  workdir=None
[2025-07-27 19:14:42] ]
[2025-07-27 19:14:42] 2025-07-27 17:14:01,417 | INFO     | transferring file log.45743349._043806.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6745502277/log.45743349._043806.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-07-27 19:14:42] 2025-07-27 17:14:01,417 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6745502277/log.45743349._043806.job.log.tgz.1 /var/lib/boinc/slots/0/log.45743349._043806.job
[2025-07-27 19:14:42] 2025-07-27 17:14:01,430 | INFO     | adding to output.list: log.45743349._043806.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e8/67/log.45743349._043806.job.log.tg
[2025-07-27 19:14:42] 2025-07-27 17:14:01,431 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 19:14:42] 2025-07-27 17:14:01,431 | INFO     | summary of transferred files:
[2025-07-27 19:14:42] 2025-07-27 17:14:01,431 | INFO     |  -- lfn=log.45743349._043806.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 19:14:42] 2025-07-27 17:14:01,431 | INFO     | stage-out finished correctly
[2025-07-27 19:14:42] 2025-07-27 17:14:02,834 | INFO     | monitor loop #343: job 0:6745502277 is in state 'finished'
[2025-07-27 19:14:42] 2025-07-27 17:14:02,834 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 19:14:42] 2025-07-27 17:14:03,828 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 19:14:42] 2025-07-27 17:14:04,615 | INFO     | PID=3224312 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 19:14:42] 2025-07-27 17:14:05,342 | INFO     | monitor loop #344: job 0:6745502277 is in state 'finished'
[2025-07-27 19:14:42] 2025-07-27 17:14:05,342 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 19:14:42] 2025-07-27 17:14:06,648 | INFO     | job 6745502277 has state=finished
[2025-07-27 19:14:42] 2025-07-27 17:14:06,648 | INFO     | preparing for final server update for job 6745502277 in state='finished'
[2025-07-27 19:14:42] 2025-07-27 17:14:06,648 | INFO     | this job has now completed (state=finished)
[2025-07-27 19:14:42] 2025-07-27 17:14:06,648 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 19:14:42] 2025-07-27 17:14:06,649 | INFO     | log transfer has been attempted: DONE
[2025-07-27 19:14:42] 2025-07-27 17:14:06,649 | INFO     | job 6745502277 has finished - writing final server update
[2025-07-27 19:14:42] 2025-07-27 17:14:06,649 | INFO     | total number of processed events: 400 (read)
[2025-07-27 19:14:42] 2025-07-27 17:14:06,650 | INFO     | executing command: lscpu
[2025-07-27 19:14:42] 2025-07-27 17:14:06,668 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 19:14:42] 2025-07-27 17:14:07,845 | INFO     | monitor loop #345: job 0:6745502277 is in state 'finished'
[2025-07-27 19:14:42] 2025-07-27 17:14:07,845 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 19:14:42] 2025-07-27 17:14:10,348 | INFO     | monitor loop #346: job 0:6745502277 is in state 'finished'
[2025-07-27 19:14:42] 2025-07-27 17:14:10,348 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 19:14:42] 2025-07-27 17:14:10,801 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-27 19:14:42] 2025-07-27 17:14:10,803 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 2397.4908333333333
[2025-07-27 19:14:42] 2025-07-27 17:14:10,805 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6745502277/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 19:14:42] 2025-07-27 17:14:10,805 | INFO     | extracted standard info from prmon json
[2025-07-27 19:14:42] 2025-07-27 17:14:10,805 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 19:14:42] 2025-07-27 17:14:10,805 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 19:14:42] 2025-07-27 17:14:10,806 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 19:14:42] 2025-07-27 17:14:10,806 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 19:14:42] 2025-07-27 17:14:10,807 | INFO     | fitting pss+swap vs Time
[2025-07-27 19:14:42] 2025-07-27 17:14:10,807 | INFO     | sum of square deviations: 97479037.0
[2025-07-27 19:14:42] 2025-07-27 17:14:10,808 | INFO     | sum of deviations: -5956336276.999999
[2025-07-27 19:14:42] 2025-07-27 17:14:10,808 | INFO     | mean x: 1753634228.5
[2025-07-27 19:14:42] 2025-07-27 17:14:10,808 | INFO     | mean y: 2814034.705882353
[2025-07-27 19:14:42] 2025-07-27 17:14:10,808 | INFO     | -- intersect: 107156469766.89635
[2025-07-27 19:14:42] 2025-07-27 17:14:10,808 | INFO     | intersect: 107156469766.89635
[2025-07-27 19:14:42] 2025-07-27 17:14:10,808 | INFO     | chi2: 0.1028417345527401
[2025-07-27 19:14:42] 2025-07-27 17:14:10,808 | INFO     | -- intersect: 107156469766.89635
[2025-07-27 19:14:42] 2025-07-27 17:14:10,808 | INFO     | current memory leak: -61.10 B/s (using 68 data points, chi2=0.10)
[2025-07-27 19:14:42] 2025-07-27 17:14:10,809 | INFO     | could have reported an average CPU frequency of 2521 MHz (6 samples)
[2025-07-27 19:14:42] 2025-07-27 17:14:10,809 | INFO     | ..............................
[2025-07-27 19:14:42] 2025-07-27 17:14:10,809 | INFO     | . Timing measurements:
[2025-07-27 19:14:42] 2025-07-27 17:14:10,809 | INFO     | . get job = 0 s
[2025-07-27 19:14:42] 2025-07-27 17:14:10,809 | INFO     | . initial setup = 1 s
[2025-07-27 19:14:42] 2025-07-27 17:14:10,809 | INFO     | . payload setup = 5 s
[2025-07-27 19:14:42] 2025-07-27 17:14:10,809 | INFO     | . stage-in = 0 s
[2025-07-27 19:14:42] 2025-07-27 17:14:10,809 | INFO     | . payload execution = 4559 s
[2025-07-27 19:14:42] 2025-07-27 17:14:10,809 | INFO     | . stage-out = 0 s
[2025-07-27 19:14:42] 2025-07-27 17:14:10,809 | INFO     | . log creation = 0 s
[2025-07-27 19:14:42] 2025-07-27 17:14:10,810 | INFO     | ..............................
[2025-07-27 19:14:42] 2025-07-27 17:14:10,878 | INFO     | 
[2025-07-27 19:14:42] 2025-07-27 17:14:10,878 | INFO     | job summary report
[2025-07-27 19:14:42] 2025-07-27 17:14:10,879 | INFO     | --------------------------------------------------
[2025-07-27 19:14:42] 2025-07-27 17:14:10,879 | INFO     | PanDA job id: 6745502277
[2025-07-27 19:14:42] 2025-07-27 17:14:10,879 | INFO     | task id: 45743349
[2025-07-27 19:14:42] 2025-07-27 17:14:10,879 | INFO     | errors: (none)
[2025-07-27 19:14:42] 2025-07-27 17:14:10,879 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 19:14:42] 2025-07-27 17:14:10,879 | INFO     | pilot state: finished 
[2025-07-27 19:14:42] 2025-07-27 17:14:10,879 | INFO     | transexitcode: 0
[2025-07-27 19:14:42] 2025-07-27 17:14:10,879 | INFO     | exeerrorcode: 0
[2025-07-27 19:14:42] 2025-07-27 17:14:10,879 | INFO     | exeerrordiag: 
[2025-07-27 19:14:42] 2025-07-27 17:14:10,879 | INFO     | exitcode: 0
[2025-07-27 19:14:42] 2025-07-27 17:14:10,879 | INFO     | exitmsg: OK
[2025-07-27 19:14:42] 2025-07-27 17:14:10,880 | INFO     | cpuconsumptiontime: 49008 s
[2025-07-27 19:14:42] 2025-07-27 17:14:10,880 | INFO     | nevents: 400
[2025-07-27 19:14:42] 2025-07-27 17:14:10,880 | INFO     | neventsw: 0
[2025-07-27 19:14:42] 2025-07-27 17:14:10,880 | INFO     | pid: 3231420
[2025-07-27 19:14:42] 2025-07-27 17:14:10,880 | INFO     | pgrp: 3231420
[2025-07-27 19:14:42] 2025-07-27 17:14:10,880 | INFO     | corecount: 12
[2025-07-27 19:14:42] 2025-07-27 17:14:10,880 | INFO     | event service: False
[2025-07-27 19:14:42] 2025-07-27 17:14:10,880 | INFO     | sizes: {0: 2397474, 3: 2397736, 11: 2397764, 4568: 2423973, 4569: 2423972, 4570: 2433054, 4573: 2433238, 4580: 2433432}
[2025-07-27 19:14:42] 2025-07-27 17:14:10,880 | INFO     | --------------------------------------------------
[2025-07-27 19:14:42] 2025-07-27 17:14:10,880 | INFO     | 
[2025-07-27 19:14:42] 2025-07-27 17:14:10,880 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-07-27 19:14:42] 2025-07-27 17:14:10,900 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 19:14:42] 2025-07-27 17:14:10,900 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 19:14:42] 2025-07-27 17:14:10,900 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 19:14:42] 2025-07-27 17:14:10,900 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 19:14:42] 2025-07-27 17:14:10,901 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 19:14:42] 2025-07-27 17:14:10,901 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 19:14:42] 2025-07-27 17:14:10,901 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 19:14:42] 2025-07-27 17:14:10,901 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 19:14:42] 2025-07-27 17:14:10,901 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 19:14:42] 2025-07-27 17:14:10,901 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 19:14:42] 2025-07-27 17:14:10,901 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 19:14:42] 2025-07-27 17:14:10,901 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 19:14:42] 2025-07-27 17:14:10,901 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 19:14:42] 2025-07-27 17:14:10,901 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 19:14:42] 2025-07-27 17:14:10,901 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 19:14:42] 2025-07-27 17:14:10,902 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 19:14:42] 2025-07-27 17:14:10,902 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 19:14:42] 2025-07-27 17:14:10,902 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 19:14:42] 2025-07-27 17:14:10,902 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 19:14:42] 2025-07-27 17:14:10,902 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 19:14:42] 2025-07-27 17:14:10,902 | INFO     | job 6745502277 has completed (purged errors)
[2025-07-27 19:14:42] 2025-07-27 17:14:10,902 | INFO     | overall cleanup function is called
[2025-07-27 19:14:42] 2025-07-27 17:14:11,909 | INFO     | --- collectZombieJob: --- 10, [3231420]
[2025-07-27 19:14:42] 2025-07-27 17:14:11,910 | INFO     | zombie collector waiting for pid 3231420
[2025-07-27 19:14:42] 2025-07-27 17:14:11,910 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 19:14:42] 2025-07-27 17:14:11,910 | INFO     | collected zombie processes
[2025-07-27 19:14:42] 2025-07-27 17:14:11,911 | INFO     | will attempt to kill all subprocesses of pid=3231420
[2025-07-27 19:14:42] 2025-07-27 17:14:12,114 | INFO     | process IDs to be killed: [3231420] (in reverse order)
[2025-07-27 19:14:42] 2025-07-27 17:14:12,175 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 19:14:42] 2025-07-27 17:14:12,176 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 19:14:42] 2025-07-27 17:14:12,178 | INFO     | did not find any defunct processes belonging to 3231420
[2025-07-27 19:14:42] 2025-07-27 17:14:12,180 | INFO     | did not find any defunct processes belonging to 3231420
[2025-07-27 19:14:42] 2025-07-27 17:14:12,180 | INFO     | ready for new job
[2025-07-27 19:14:42] 2025-07-27 17:14:12,180 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 19:14:42] 2025-07-27 17:14:12,181 | INFO     | ***************************************
[2025-07-27 19:14:42] 2025-07-27 17:14:12,181 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 19:14:42] 2025-07-27 17:14:12,181 | INFO     | ***************************************
[2025-07-27 19:14:42] 2025-07-27 17:14:12,182 | INFO     | 
[2025-07-27 19:14:42] 2025-07-27 17:14:12,182 | INFO     | architecture information:
[2025-07-27 19:14:42] 2025-07-27 17:14:12,182 | INFO     | executing command: cat /etc/os-release
[2025-07-27 19:14:42] 2025-07-27 17:14:12,195 | INFO     | cat /etc/os-release:
[2025-07-27 19:14:42] NAME="CentOS Linux"
[2025-07-27 19:14:42] VERSION="7 (Core)"
[2025-07-27 19:14:42] ID="centos"
[2025-07-27 19:14:42] ID_LIKE="rhel fedora"
[2025-07-27 19:14:42] VERSION_ID="7"
[2025-07-27 19:14:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 19:14:42] ANSI_COLOR="0;31"
[2025-07-27 19:14:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 19:14:42] HOME_URL="https://www.centos.org/"
[2025-07-27 19:14:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 19:14:42] 
[2025-07-27 19:14:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 19:14:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 19:14:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 19:14:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 19:14:42] 
[2025-07-27 19:14:42] 2025-07-27 17:14:12,195 | INFO     | ***************************************
[2025-07-27 19:14:42] 2025-07-27 17:14:12,698 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-07-27 19:14:42] 2025-07-27 17:14:12,711 | INFO     | sufficient remaining disk space (1817409748992 B)
[2025-07-27 19:14:42] 2025-07-27 17:14:12,711 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 19:14:42] 2025-07-27 17:14:12,712 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 19:14:42] 2025-07-27 17:14:12,712 | INFO     | update_server=False
[2025-07-27 19:14:42] 2025-07-27 17:14:12,712 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 19:14:42] 2025-07-27 17:14:12,712 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 19:14:42] 2025-07-27 17:14:12,712 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 19:14:42] 2025-07-27 17:14:12,851 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-27 19:14:42] 2025-07-27 17:14:12,851 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-27 19:14:42] 2025-07-27 17:14:12,851 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 19:14:42] 2025-07-27 17:14:12,851 | INFO     | will abort loop
[2025-07-27 19:14:42] 2025-07-27 17:14:13,235 | INFO     | all payload control threads have been joined
[2025-07-27 19:14:42] 2025-07-27 17:14:13,301 | INFO     | all data control threads have been joined
[2025-07-27 19:14:42] 2025-07-27 17:14:13,643 | INFO     | all job control threads have been joined
[2025-07-27 19:14:42] 2025-07-27 17:14:13,717 | INFO     | [job] retrieve thread has finished
[2025-07-27 19:14:42] 2025-07-27 17:14:13,717 | INFO     | [job] queue monitor thread has finished
[2025-07-27 19:14:42] 2025-07-27 17:14:13,742 | INFO     | [payload] validate_post thread has finished
[2025-07-27 19:14:42] 2025-07-27 17:14:13,856 | INFO     | [job] job monitor thread has finished
[2025-07-27 19:14:42] 2025-07-27 17:14:14,199 | INFO     | [job] validate thread has finished
[2025-07-27 19:14:42] 2025-07-27 17:14:14,240 | INFO     | [payload] control thread has finished
[2025-07-27 19:14:42] 2025-07-27 17:14:14,307 | INFO     | [data] control thread has finished
[2025-07-27 19:14:42] 2025-07-27 17:14:14,355 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 19:14:42] 2025-07-27 17:14:14,387 | INFO     | [data] copytool_in thread has finished
[2025-07-27 19:14:42] 2025-07-27 17:14:14,398 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 19:14:42] 2025-07-27 17:14:14,402 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 19:14:42] 2025-07-27 17:14:14,407 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 19:14:42] 2025-07-27 17:14:14,648 | INFO     | [job] control thread has finished
[2025-07-27 19:14:42] 2025-07-27 17:14:14,670 | INFO     | [payload] failed_post thread has finished
[2025-07-27 19:14:42] 2025-07-27 17:14:14,718 | INFO     | [data] copytool_out thread has finished
[2025-07-27 19:14:42] 2025-07-27 17:14:14,761 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 19:14:42] 2025-07-27 17:14:18,404 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 19:14:42] 2025-07-27 17:14:19,303 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139726497896256)>', '<ExcThread(monitor, started 139725688010496)>']
[2025-07-27 19:14:42] 2025-07-27 17:14:24,305 | INFO     | all workflow threads have been joined
[2025-07-27 19:14:42] 2025-07-27 17:14:24,305 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 19:14:42] 2025-07-27 17:14:24,305 | INFO     | traces error code: 0
[2025-07-27 19:14:42] 2025-07-27 17:14:24,305 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 19:14:42] 2025-07-27 17:14:42,809 | INFO     | PID=3224312 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 19:14:42] 2025-07-27 17:14:42,810 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 19:14:42] 2025-07-27 17:14:42,810 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 19:14:42] 2025-07-27 17:14:42,810 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 19:14:42] 2025-07-27 17:14:42,810 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 19:14:42] 2025-07-27 17:14:42,810 | INFO     | [monitor] control thread has ended
[2025-07-27 19:14:42] 2025-07-27 17:14:42,889 [wrapper] ==== pilot stdout END ====
[2025-07-27 19:14:42] 2025-07-27 17:14:42,892 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 19:14:42] 2025-07-27 17:14:42,894 [wrapper] pilotpid: 3224312
[2025-07-27 19:14:42] 2025-07-27 17:14:42,897 [wrapper] Pilot exit status: 0
[2025-07-27 19:14:42] 2025-07-27 17:14:42,906 [wrapper] pandaids: 6745502277
[2025-07-27 19:14:42] 2025-07-27 17:14:42,925 [wrapper] cleanup supervisor_pilot 3247463 3224313
[2025-07-27 19:14:42] 2025-07-27 17:14:42,927 [wrapper] Test setup, not cleaning
[2025-07-27 19:14:42] 2025-07-27 17:14:42,928 [wrapper] apfmon messages muted
[2025-07-27 19:14:42] 2025-07-27 17:14:42,930 [wrapper] ==== wrapper stdout END ====
[2025-07-27 19:14:42] 2025-07-27 17:14:42,932 [wrapper] ==== wrapper stderr END ====
[2025-07-27 19:14:42]  *** Error codes and diagnostics ***
[2025-07-27 19:14:42]     "exeErrorCode": 0,
[2025-07-27 19:14:42]     "exeErrorDiag": "",
[2025-07-27 19:14:42]     "pilotErrorCode": 0,
[2025-07-27 19:14:42]     "pilotErrorDiag": "",
[2025-07-27 19:14:42]  *** Listing of results directory ***
[2025-07-27 19:14:42] total 344988
[2025-07-27 19:14:42] -rw-r--r-- 1 boinc boinc    550332 Jun 18 17:33 pilot3.tar.gz
[2025-07-27 19:14:42] -rwx------ 1 boinc boinc     36292 Jul 26 22:16 runpilot2-wrapper.sh
[2025-07-27 19:14:42] -rw-r--r-- 1 boinc boinc      5112 Jul 26 22:16 queuedata.json
[2025-07-27 19:14:42] -rw-r--r-- 1 boinc boinc       100 Jul 27 17:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 19:14:42] -rwxr-xr-x 1 boinc boinc      7986 Jul 27 17:57 run_atlas
[2025-07-27 19:14:42] -rw-r--r-- 1 boinc boinc       105 Jul 27 17:57 job.xml
[2025-07-27 19:14:42] -rw-r--r-- 2 boinc boinc 144600782 Jul 27 17:57 EVNT.45743347._002501.pool.root.1
[2025-07-27 19:14:42] -rw-r--r-- 2 boinc boinc     15095 Jul 27 17:57 start_atlas.sh
[2025-07-27 19:14:42] drwxrwx--x 2 boinc boinc        68 Jul 27 17:57 shared
[2025-07-27 19:14:42] -rw-r--r-- 2 boinc boinc    564556 Jul 27 17:57 input.tar.gz
[2025-07-27 19:14:42] -rw-r--r-- 1 boinc boinc      6294 Jul 27 17:57 init_data.xml
[2025-07-27 19:14:42] -rw-r--r-- 1 boinc boinc         0 Jul 27 17:57 boinc_lockfile
[2025-07-27 19:14:42] -rw-r--r-- 1 boinc boinc      2562 Jul 27 17:57 pandaJob.out
[2025-07-27 19:14:42] -rw------- 1 boinc boinc    980101 Jul 27 17:57 agis_schedconf.cvmfs.json
[2025-07-27 19:14:42] -rw------- 1 boinc boinc   1593052 Jul 27 17:57 agis_ddmendpoints.agis.ALL.json
[2025-07-27 19:14:42] drwx------ 6 boinc boinc      4096 Jul 27 17:57 pilot3
[2025-07-27 19:14:42] -rw------- 1 boinc boinc 203149072 Jul 27 19:13 HITS.45743349._043806.pool.root.1
[2025-07-27 19:14:42] -rw-r--r-- 1 boinc boinc       529 Jul 27 19:13 boinc_task_state.xml
[2025-07-27 19:14:42] -rw------- 1 boinc boinc      1017 Jul 27 19:13 memory_monitor_summary.json
[2025-07-27 19:14:42] -rw------- 1 boinc boinc    359830 Jul 27 19:14 log.45743349._043806.job.log.tgz.1
[2025-07-27 19:14:42] -rw------- 1 boinc boinc      7786 Jul 27 19:14 heartbeat.json
[2025-07-27 19:14:42] -rw-r--r-- 1 boinc boinc        27 Jul 27 19:14 wrapper_checkpoint.txt
[2025-07-27 19:14:42] -rw-r--r-- 1 boinc boinc      8192 Jul 27 19:14 boinc_mmap_file
[2025-07-27 19:14:42] -rw------- 1 boinc boinc        95 Jul 27 19:14 pilot_heartbeat.json
[2025-07-27 19:14:42] -rw------- 1 boinc boinc       747 Jul 27 19:14 pilotlog.txt
[2025-07-27 19:14:42] -rw------- 1 boinc boinc    447107 Jul 27 19:14 log.45743349._043806.job.log.1
[2025-07-27 19:14:42] -rw------- 1 boinc boinc       357 Jul 27 19:14 output.list
[2025-07-27 19:14:42] -rw-r--r-- 1 boinc boinc       620 Jul 27 19:14 runtime_log
[2025-07-27 19:14:42] -rw------- 1 boinc boinc    829440 Jul 27 19:14 result.tar.gz
[2025-07-27 19:14:42] -rw-r--r-- 1 boinc boinc      8684 Jul 27 19:14 runtime_log.err
[2025-07-27 19:14:42] -rw------- 1 boinc boinc       654 Jul 27 19:14 3fFMDmOV0z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmK1SLDm2sbxJo.diag
[2025-07-27 19:14:42] -rw-r--r-- 1 boinc boinc     22150 Jul 27 19:14 stderr.txt
[2025-07-27 19:14:42] HITS file was successfully produced:
[2025-07-27 19:14:43] -rw------- 1 boinc boinc 203149072 Jul 27 19:13 shared/HITS.pool.root.1
[2025-07-27 19:14:43]  *** Contents of shared directory: ***
[2025-07-27 19:14:43] total 340980
[2025-07-27 19:14:43] -rw-r--r-- 2 boinc boinc 144600782 Jul 27 17:57 ATLAS.root_0
[2025-07-27 19:14:43] -rw-r--r-- 2 boinc boinc     15095 Jul 27 17:57 start_atlas.sh
[2025-07-27 19:14:43] -rw-r--r-- 2 boinc boinc    564556 Jul 27 17:57 input.tar.gz
[2025-07-27 19:14:43] -rw------- 1 boinc boinc 203149072 Jul 27 19:13 HITS.pool.root.1
[2025-07-27 19:14:43] -rw------- 1 boinc boinc    829440 Jul 27 19:14 result.tar.gz
19:14:44 (3220630): run_atlas exited; CPU time 49040.188348
19:14:44 (3220630): called boinc_finish(0)

</stderr_txt>
]]>

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