Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:45:46 (268847): wrapper (7.7.26015): starting
05:45:46 (268847): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 05:45:46] Arguments: --nthreads 12
[2025-07-27 05:45:46] Threads: 12
[2025-07-27 05:45:46] Checking for CVMFS
[2025-07-27 05:45:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 05:45:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 05:45:47] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 05:45:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 05:45:47] 2.13.1.0 130251 6535 134488 148807 0 105 37392995 40960001 4620 16776704 0 6722391 99.745 7632040 35961 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 05:45:47] CVMFS is ok
[2025-07-27 05:45:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 05:45:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 05:45:47] Further information can be found at the LHC@home message board.
[2025-07-27 05:45:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 05:45:47] Checking for apptainer binary...
[2025-07-27 05:45:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 05:45:47] Running /usr/bin/apptainer --version
[2025-07-27 05:45:47] apptainer version 1.4.1-1.el9
[2025-07-27 05:45:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 05:45:47] c-210-8.aglt2.org
[2025-07-27 05:45:47] apptainer works
[2025-07-27 05:45:47] Set ATHENA_PROC_NUMBER=12
[2025-07-27 05:45:47] Set ATHENA_CORE_NUMBER=12
[2025-07-27 05:45:47] Starting ATLAS job with PandaID=6746024485
[2025-07-27 05:45:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 08:17:30]  *** The last 200 lines of the pilot log: ***
[2025-07-27 08:17:30] 2025-07-27 12:16:52,642 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 08:17:30] 2025-07-27 12:16:55,133 | INFO     | monitor loop #667: job 0:6746024485 is in state 'finished'
[2025-07-27 08:17:30] 2025-07-27 12:16:55,134 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 08:17:30] 2025-07-27 12:16:56,969 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 08:17:30] 2025-07-27 12:16:56,976 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2522.936145833333
[2025-07-27 08:17:30] 2025-07-27 12:16:56,984 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6746024485/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 08:17:30] 2025-07-27 12:16:56,985 | INFO     | extracted standard info from prmon json
[2025-07-27 08:17:30] 2025-07-27 12:16:56,985 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 08:17:30] 2025-07-27 12:16:56,985 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 08:17:30] 2025-07-27 12:16:56,986 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 08:17:30] 2025-07-27 12:16:56,986 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 08:17:30] 2025-07-27 12:16:56,988 | INFO     | fitting pss+swap vs Time
[2025-07-27 08:17:30] 2025-07-27 12:16:56,989 | INFO     | sum of square deviations: 1005179777.0
[2025-07-27 08:17:30] 2025-07-27 12:16:56,990 | INFO     | sum of deviations: 11087413039.5
[2025-07-27 08:17:30] 2025-07-27 12:16:56,990 | INFO     | mean x: 1753614069.5
[2025-07-27 08:17:30] 2025-07-27 12:16:56,990 | INFO     | mean y: 2700547.804054054
[2025-07-27 08:17:30] 2025-07-27 12:16:56,990 | INFO     | -- intersect: -19340151293.53871
[2025-07-27 08:17:30] 2025-07-27 12:16:56,990 | INFO     | intersect: -19340151293.53871
[2025-07-27 08:17:30] 2025-07-27 12:16:56,990 | INFO     | chi2: 1.44606764334105
[2025-07-27 08:17:30] 2025-07-27 12:16:56,991 | INFO     | sum of square deviations: 906703512.0
[2025-07-27 08:17:30] 2025-07-27 12:16:56,991 | INFO     | sum of deviations: 10708678221.999998
[2025-07-27 08:17:30] 2025-07-27 12:16:56,991 | INFO     | mean x: 1753613917.0
[2025-07-27 08:17:30] 2025-07-27 12:16:56,992 | INFO     | mean y: 2699957.3706293707
[2025-07-27 08:17:30] 2025-07-27 12:16:56,992 | INFO     | -- intersect: -20708466277.501102
[2025-07-27 08:17:30] 2025-07-27 12:16:56,992 | INFO     | intersect: -20708466277.501102
[2025-07-27 08:17:30] 2025-07-27 12:16:56,992 | INFO     | chi2: 1.4475523608814151
[2025-07-27 08:17:30] 2025-07-27 12:16:56,992 | INFO     | current chi2=1.4475523608814151 (change=-0.10267275858097603 %)
[2025-07-27 08:17:30] 2025-07-27 12:16:56,992 | INFO     | right removable region: 142
[2025-07-27 08:17:30] 2025-07-27 12:16:56,992 | INFO     | sum of square deviations: 906703512.0
[2025-07-27 08:17:30] 2025-07-27 12:16:56,993 | INFO     | sum of deviations: -10011167012.000002
[2025-07-27 08:17:30] 2025-07-27 12:16:56,993 | INFO     | mean x: 1753614222.0
[2025-07-27 08:17:30] 2025-07-27 12:16:56,994 | INFO     | mean y: 2732660.230769231
[2025-07-27 08:17:30] 2025-07-27 12:16:56,994 | INFO     | -- intersect: 19364877637.849922
[2025-07-27 08:17:30] 2025-07-27 12:16:56,994 | INFO     | intersect: 19364877637.849922
[2025-07-27 08:17:30] 2025-07-27 12:16:56,994 | INFO     | chi2: 0.1630299427364259
[2025-07-27 08:17:30] 2025-07-27 12:16:56,994 | INFO     | current chi2=0.1630299427364259 (change=88.72598087045532 %)
[2025-07-27 08:17:30] 2025-07-27 12:16:56,995 | INFO     | sum of square deviations: 814878534.5
[2025-07-27 08:17:30] 2025-07-27 12:16:56,995 | INFO     | sum of deviations: -12973129616.000004
[2025-07-27 08:17:30] 2025-07-27 12:16:56,995 | INFO     | mean x: 1753614374.5
[2025-07-27 08:17:30] 2025-07-27 12:16:56,996 | INFO     | mean y: 2737579.9565217393
[2025-07-27 08:17:30] 2025-07-27 12:16:56,996 | INFO     | -- intersect: 27920845142.85646
[2025-07-27 08:17:30] 2025-07-27 12:16:56,996 | INFO     | intersect: 27920845142.85646
[2025-07-27 08:17:30] 2025-07-27 12:16:56,996 | INFO     | chi2: 0.13630392194084906
[2025-07-27 08:17:30] 2025-07-27 12:16:56,996 | INFO     | current chi2=0.13630392194084906 (change=16.393320360042935 %)
[2025-07-27 08:17:30] 2025-07-27 12:16:56,996 | INFO     | left removable region: 20
[2025-07-27 08:17:30] 2025-07-27 12:16:56,997 | INFO     | sum of square deviations: 563026370.5
[2025-07-27 08:17:30] 2025-07-27 12:16:56,997 | INFO     | sum of deviations: 1152029468.9999998
[2025-07-27 08:17:30] 2025-07-27 12:16:56,997 | INFO     | mean x: 1753614496.5
[2025-07-27 08:17:30] 2025-07-27 12:16:56,997 | INFO     | mean y: 2710611.1147540985
[2025-07-27 08:17:30] 2025-07-27 12:16:56,998 | INFO     | -- intersect: -3585426078.538927
[2025-07-27 08:17:30] 2025-07-27 12:16:56,998 | INFO     | intersect: -3585426078.538927
[2025-07-27 08:17:30] 2025-07-27 12:16:56,998 | INFO     | chi2: 0.0009008980809942221
[2025-07-27 08:17:30] 2025-07-27 12:16:56,998 | INFO     | -- intersect: -3585426078.538927
[2025-07-27 08:17:30] 2025-07-27 12:16:56,998 | INFO     | current memory leak: 2.05 B/s (using 122 data points, chi2=0.00)
[2025-07-27 08:17:30] 2025-07-27 12:16:56,999 | INFO     | could have reported an average CPU frequency of 2533 MHz (9 samples)
[2025-07-27 08:17:30] 2025-07-27 12:16:56,999 | INFO     | ..............................
[2025-07-27 08:17:30] 2025-07-27 12:16:56,999 | INFO     | . Timing measurements:
[2025-07-27 08:17:30] 2025-07-27 12:16:56,999 | INFO     | . get job = 0 s
[2025-07-27 08:17:30] 2025-07-27 12:16:56,999 | INFO     | . initial setup = 2 s
[2025-07-27 08:17:30] 2025-07-27 12:16:56,999 | INFO     | . payload setup = 7 s
[2025-07-27 08:17:30] 2025-07-27 12:16:57,000 | INFO     | . stage-in = 0 s
[2025-07-27 08:17:30] 2025-07-27 12:16:57,000 | INFO     | . payload execution = 9018 s
[2025-07-27 08:17:30] 2025-07-27 12:16:57,000 | INFO     | . stage-out = 1 s
[2025-07-27 08:17:30] 2025-07-27 12:16:57,000 | INFO     | . log creation = 0 s
[2025-07-27 08:17:30] 2025-07-27 12:16:57,000 | INFO     | ..............................
[2025-07-27 08:17:30] 2025-07-27 12:16:57,087 | INFO     | 
[2025-07-27 08:17:30] 2025-07-27 12:16:57,088 | INFO     | job summary report
[2025-07-27 08:17:30] 2025-07-27 12:16:57,088 | INFO     | --------------------------------------------------
[2025-07-27 08:17:30] 2025-07-27 12:16:57,088 | INFO     | PanDA job id: 6746024485
[2025-07-27 08:17:30] 2025-07-27 12:16:57,088 | INFO     | task id: 45758492
[2025-07-27 08:17:30] 2025-07-27 12:16:57,088 | INFO     | errors: (none)
[2025-07-27 08:17:30] 2025-07-27 12:16:57,088 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 08:17:30] 2025-07-27 12:16:57,088 | INFO     | pilot state: finished 
[2025-07-27 08:17:30] 2025-07-27 12:16:57,088 | INFO     | transexitcode: 0
[2025-07-27 08:17:30] 2025-07-27 12:16:57,088 | INFO     | exeerrorcode: 0
[2025-07-27 08:17:30] 2025-07-27 12:16:57,088 | INFO     | exeerrordiag: 
[2025-07-27 08:17:30] 2025-07-27 12:16:57,088 | INFO     | exitcode: 0
[2025-07-27 08:17:30] 2025-07-27 12:16:57,088 | INFO     | exitmsg: OK
[2025-07-27 08:17:30] 2025-07-27 12:16:57,089 | INFO     | cpuconsumptiontime: 97732 s
[2025-07-27 08:17:30] 2025-07-27 12:16:57,089 | INFO     | nevents: 400
[2025-07-27 08:17:30] 2025-07-27 12:16:57,089 | INFO     | neventsw: 0
[2025-07-27 08:17:30] 2025-07-27 12:16:57,089 | INFO     | pid: 279195
[2025-07-27 08:17:30] 2025-07-27 12:16:57,089 | INFO     | pgrp: 279195
[2025-07-27 08:17:30] 2025-07-27 12:16:57,089 | INFO     | corecount: 12
[2025-07-27 08:17:30] 2025-07-27 12:16:57,089 | INFO     | event service: False
[2025-07-27 08:17:30] 2025-07-27 12:16:57,089 | INFO     | sizes: {0: 2396632, 1: 2397488, 6: 2397750, 12: 2397778, 9029: 2425951, 9030: 2425950, 9031: 2435188, 9043: 2435414}
[2025-07-27 08:17:30] 2025-07-27 12:16:57,089 | INFO     | --------------------------------------------------
[2025-07-27 08:17:30] 2025-07-27 12:16:57,089 | INFO     | 
[2025-07-27 08:17:30] 2025-07-27 12:16:57,089 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 08:17:30] 2025-07-27 12:16:57,108 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 08:17:30] 2025-07-27 12:16:57,109 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 08:17:30] 2025-07-27 12:16:57,109 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 08:17:30] 2025-07-27 12:16:57,109 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 08:17:30] 2025-07-27 12:16:57,109 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 08:17:30] 2025-07-27 12:16:57,109 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 08:17:30] 2025-07-27 12:16:57,109 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 08:17:30] 2025-07-27 12:16:57,109 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 08:17:30] 2025-07-27 12:16:57,110 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 08:17:30] 2025-07-27 12:16:57,110 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 08:17:30] 2025-07-27 12:16:57,110 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 08:17:30] 2025-07-27 12:16:57,110 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 08:17:30] 2025-07-27 12:16:57,110 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 08:17:30] 2025-07-27 12:16:57,110 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 08:17:30] 2025-07-27 12:16:57,110 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 08:17:30] 2025-07-27 12:16:57,110 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 08:17:30] 2025-07-27 12:16:57,110 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 08:17:30] 2025-07-27 12:16:57,110 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 08:17:30] 2025-07-27 12:16:57,110 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 08:17:30] 2025-07-27 12:16:57,111 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 08:17:30] 2025-07-27 12:16:57,111 | INFO     | job 6746024485 has completed (purged errors)
[2025-07-27 08:17:30] 2025-07-27 12:16:57,111 | INFO     | overall cleanup function is called
[2025-07-27 08:17:30] 2025-07-27 12:16:58,119 | INFO     | --- collectZombieJob: --- 10, [279195]
[2025-07-27 08:17:30] 2025-07-27 12:16:58,119 | INFO     | zombie collector waiting for pid 279195
[2025-07-27 08:17:30] 2025-07-27 12:16:58,120 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 08:17:30] 2025-07-27 12:16:58,120 | INFO     | collected zombie processes
[2025-07-27 08:17:30] 2025-07-27 12:16:58,120 | INFO     | will attempt to kill all subprocesses of pid=279195
[2025-07-27 08:17:30] 2025-07-27 12:16:58,419 | INFO     | process IDs to be killed: [279195] (in reverse order)
[2025-07-27 08:17:30] 2025-07-27 12:16:58,509 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 08:17:30] 2025-07-27 12:16:58,509 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 08:17:30] 2025-07-27 12:16:58,520 | INFO     | did not find any defunct processes belonging to 279195
[2025-07-27 08:17:30] 2025-07-27 12:16:58,531 | INFO     | did not find any defunct processes belonging to 279195
[2025-07-27 08:17:30] 2025-07-27 12:16:58,532 | INFO     | ready for new job
[2025-07-27 08:17:30] 2025-07-27 12:16:58,532 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 08:17:30] 2025-07-27 12:16:58,534 | INFO     | ***************************************
[2025-07-27 08:17:30] 2025-07-27 12:16:58,535 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 08:17:30] 2025-07-27 12:16:58,535 | INFO     | ***************************************
[2025-07-27 08:17:30] 2025-07-27 12:16:58,535 | INFO     | 
[2025-07-27 08:17:30] 2025-07-27 12:16:58,538 | INFO     | architecture information:
[2025-07-27 08:17:30] 2025-07-27 12:16:58,539 | INFO     | executing command: cat /etc/os-release
[2025-07-27 08:17:30] 2025-07-27 12:16:58,556 | INFO     | cat /etc/os-release:
[2025-07-27 08:17:30] NAME="CentOS Linux"
[2025-07-27 08:17:30] VERSION="7 (Core)"
[2025-07-27 08:17:30] ID="centos"
[2025-07-27 08:17:30] ID_LIKE="rhel fedora"
[2025-07-27 08:17:30] VERSION_ID="7"
[2025-07-27 08:17:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 08:17:30] ANSI_COLOR="0;31"
[2025-07-27 08:17:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 08:17:30] HOME_URL="https://www.centos.org/"
[2025-07-27 08:17:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 08:17:30] 
[2025-07-27 08:17:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 08:17:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 08:17:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 08:17:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 08:17:30] 
[2025-07-27 08:17:30] 2025-07-27 12:16:58,556 | INFO     | ***************************************
[2025-07-27 08:17:30] 2025-07-27 12:16:59,059 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 08:17:30] 2025-07-27 12:16:59,074 | INFO     | sufficient remaining disk space (64642613248 B)
[2025-07-27 08:17:30] 2025-07-27 12:16:59,075 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 08:17:30] 2025-07-27 12:16:59,075 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 08:17:30] 2025-07-27 12:16:59,075 | INFO     | update_server=False
[2025-07-27 08:17:30] 2025-07-27 12:16:59,075 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 08:17:30] 2025-07-27 12:16:59,075 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 08:17:30] 2025-07-27 12:16:59,075 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 08:17:30] 2025-07-27 12:16:59,076 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 08:17:30] 2025-07-27 12:16:59,076 | INFO     | aborting loop
[2025-07-27 08:17:30] 2025-07-27 12:16:59,932 | INFO     | all job control threads have been joined
[2025-07-27 08:17:30] 2025-07-27 12:17:00,080 | INFO     | [job] retrieve thread has finished
[2025-07-27 08:17:30] 2025-07-27 12:17:00,081 | INFO     | [job] queue monitor thread has finished
[2025-07-27 08:17:30] 2025-07-27 12:17:00,082 | INFO     | [job] job monitor thread has finished
[2025-07-27 08:17:30] 2025-07-27 12:17:00,115 | INFO     | [data] copytool_in thread has finished
[2025-07-27 08:17:30] 2025-07-27 12:17:00,119 | INFO     | all data control threads have been joined
[2025-07-27 08:17:30] 2025-07-27 12:17:00,309 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 08:17:30] 2025-07-27 12:17:00,327 | INFO     | all payload control threads have been joined
[2025-07-27 08:17:30] 2025-07-27 12:17:00,587 | INFO     | [payload] failed_post thread has finished
[2025-07-27 08:17:30] 2025-07-27 12:17:00,590 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 08:17:30] 2025-07-27 12:17:00,988 | INFO     | [job] control thread has finished
[2025-07-27 08:17:30] 2025-07-27 12:17:01,081 | INFO     | [data] copytool_out thread has finished
[2025-07-27 08:17:30] 2025-07-27 12:17:01,088 | INFO     | [job] validate thread has finished
[2025-07-27 08:17:30] 2025-07-27 12:17:01,124 | INFO     | [data] control thread has finished
[2025-07-27 08:17:30] 2025-07-27 12:17:01,269 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 08:17:30] 2025-07-27 12:17:01,332 | INFO     | [payload] control thread has finished
[2025-07-27 08:17:30] 2025-07-27 12:17:01,375 | INFO     | [payload] validate_post thread has finished
[2025-07-27 08:17:30] 2025-07-27 12:17:01,439 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 08:17:30] 2025-07-27 12:17:04,595 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 08:17:30] 2025-07-27 12:17:10,086 | INFO     | job.realtimelogging is not enabled
[2025-07-27 08:17:30] 2025-07-27 12:17:11,091 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 08:17:30] 2025-07-27 12:17:13,023 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140399426574144)>', '<ExcThread(monitor, started 140398588589824)>']
[2025-07-27 08:17:30] 2025-07-27 12:17:18,049 | INFO     | all workflow threads have been joined
[2025-07-27 08:17:30] 2025-07-27 12:17:18,050 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 08:17:30] 2025-07-27 12:17:18,050 | INFO     | traces error code: 0
[2025-07-27 08:17:30] 2025-07-27 12:17:18,050 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 08:17:30] 2025-07-27 12:17:30,251 | INFO     | PID=272715 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 08:17:30] 2025-07-27 12:17:30,252 | INFO     | .. there are 7 such processes running
[2025-07-27 08:17:30] 2025-07-27 12:17:30,252 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 08:17:30] 2025-07-27 12:17:30,252 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 08:17:30] 2025-07-27 12:17:30,252 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 08:17:30] 2025-07-27 12:17:30,252 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 08:17:30] 2025-07-27 12:17:30,252 | INFO     | [monitor] control thread has ended
[2025-07-27 08:17:30] 2025-07-27 12:17:30,472 [wrapper] ==== pilot stdout END ====
[2025-07-27 08:17:30] 2025-07-27 12:17:30,476 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 08:17:30] 2025-07-27 12:17:30,479 [wrapper] pilotpid: 272715
[2025-07-27 08:17:30] 2025-07-27 12:17:30,483 [wrapper] Pilot exit status: 0
[2025-07-27 08:17:30] 2025-07-27 12:17:30,497 [wrapper] pandaids: 6746024485
[2025-07-27 08:17:30] 2025-07-27 12:17:30,556 [wrapper] cleanup supervisor_pilot  470387 272716
[2025-07-27 08:17:30] 2025-07-27 12:17:30,560 [wrapper] Test setup, not cleaning
[2025-07-27 08:17:30] 2025-07-27 12:17:30,564 [wrapper] apfmon messages muted
[2025-07-27 08:17:30] 2025-07-27 12:17:30,568 [wrapper] ==== wrapper stdout END ====
[2025-07-27 08:17:30] 2025-07-27 12:17:30,572 [wrapper] ==== wrapper stderr END ====
[2025-07-27 08:17:30]  *** Error codes and diagnostics ***
[2025-07-27 08:17:30]     "exeErrorCode": 0,
[2025-07-27 08:17:30]     "exeErrorDiag": "",
[2025-07-27 08:17:30]     "pilotErrorCode": 0,
[2025-07-27 08:17:30]     "pilotErrorDiag": "",
[2025-07-27 08:17:30]  *** Listing of results directory ***
[2025-07-27 08:17:30] total 353868
[2025-07-27 08:17:30] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 00:45 pilot3.tar.gz
[2025-07-27 08:17:30] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 00:47 queuedata.json
[2025-07-27 08:17:30] -rwx------. 1 boincer umatlas     36292 Jul 27 00:47 runpilot2-wrapper.sh
[2025-07-27 08:17:30] -rw-r--r--. 1 boincer umatlas       100 Jul 27 05:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 08:17:30] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 05:45 run_atlas
[2025-07-27 08:17:30] -rw-r--r--. 1 boincer umatlas       105 Jul 27 05:45 job.xml
[2025-07-27 08:17:30] -rw-r--r--. 2 boincer umatlas 203312183 Jul 27 05:45 EVNT.45758490._000003.pool.root.1
[2025-07-27 08:17:30] -rw-r--r--. 2 boincer umatlas    542870 Jul 27 05:45 input.tar.gz
[2025-07-27 08:17:30] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 05:45 start_atlas.sh
[2025-07-27 08:17:30] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 05:45 shared
[2025-07-27 08:17:30] -rw-r--r--. 1 boincer umatlas         0 Jul 27 05:45 boinc_lockfile
[2025-07-27 08:17:30] -rw-r--r--. 1 boincer umatlas      2551 Jul 27 05:45 pandaJob.out
[2025-07-27 08:17:30] -rw-------. 1 boincer umatlas    980125 Jul 27 05:45 agis_schedconf.cvmfs.json
[2025-07-27 08:17:30] -rw-------. 1 boincer umatlas   1593052 Jul 27 05:45 agis_ddmendpoints.agis.ALL.json
[2025-07-27 08:17:30] drwx------. 4 boincer umatlas      4096 Jul 27 05:45 pilot3
[2025-07-27 08:17:30] -rw-r--r--. 1 boincer umatlas      6610 Jul 27 08:11 init_data.xml
[2025-07-27 08:17:30] -rw-------. 1 boincer umatlas 152667892 Jul 27 08:16 HITS.45758492._000055.pool.root.1
[2025-07-27 08:17:30] -rw-r--r--. 1 boincer umatlas       529 Jul 27 08:16 boinc_task_state.xml
[2025-07-27 08:17:30] -rw-------. 1 boincer umatlas      1042 Jul 27 08:16 memory_monitor_summary.json
[2025-07-27 08:17:30] -rw-------. 1 boincer umatlas    398757 Jul 27 08:16 log.45758492._000055.job.log.tgz.1
[2025-07-27 08:17:30] -rw-------. 1 boincer umatlas        95 Jul 27 08:16 pilot_heartbeat.json
[2025-07-27 08:17:30] -rw-------. 1 boincer umatlas      7811 Jul 27 08:16 heartbeat.json
[2025-07-27 08:17:30] -rw-r--r--. 1 boincer umatlas        27 Jul 27 08:17 wrapper_checkpoint.txt
[2025-07-27 08:17:30] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 08:17 boinc_mmap_file
[2025-07-27 08:17:30] -rw-------. 1 boincer umatlas       821 Jul 27 08:17 pilotlog.txt
[2025-07-27 08:17:30] -rw-------. 1 boincer umatlas    853742 Jul 27 08:17 log.45758492._000055.job.log.1
[2025-07-27 08:17:30] -rw-------. 1 boincer umatlas       357 Jul 27 08:17 output.list
[2025-07-27 08:17:30] -rw-r--r--. 1 boincer umatlas       620 Jul 27 08:17 runtime_log
[2025-07-27 08:17:30] -rw-------. 1 boincer umatlas   1269760 Jul 27 08:17 result.tar.gz
[2025-07-27 08:17:30] -rw-r--r--. 1 boincer umatlas      8657 Jul 27 08:17 runtime_log.err
[2025-07-27 08:17:30] -rw-------. 1 boincer umatlas       654 Jul 27 08:17 17GLDmBT8z7n9Rq4apOajLDm4fhM0noT9bVof3QYDmlx1KDmEjhx5n.diag
[2025-07-27 08:17:30] -rw-r--r--. 1 boincer umatlas     21237 Jul 27 08:17 stderr.txt
[2025-07-27 08:17:30] HITS file was successfully produced:
[2025-07-27 08:17:30] -rw-------. 1 boincer umatlas 152667892 Jul 27 08:16 shared/HITS.pool.root.1
[2025-07-27 08:17:30]  *** Contents of shared directory: ***
[2025-07-27 08:17:30] total 349436
[2025-07-27 08:17:30] -rw-r--r--. 2 boincer umatlas 203312183 Jul 27 05:45 ATLAS.root_0
[2025-07-27 08:17:30] -rw-r--r--. 2 boincer umatlas    542870 Jul 27 05:45 input.tar.gz
[2025-07-27 08:17:30] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 05:45 start_atlas.sh
[2025-07-27 08:17:30] -rw-------. 1 boincer umatlas 152667892 Jul 27 08:16 HITS.pool.root.1
[2025-07-27 08:17:30] -rw-------. 1 boincer umatlas   1269760 Jul 27 08:17 result.tar.gz
08:17:32 (268847): run_atlas exited; CPU time 98004.978777
08:17:32 (268847): called boinc_finish(0)

</stderr_txt>
]]>

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