Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-27 18:50:09 (10916): Detected: vboxwrapper 26206
2025-07-27 18:50:09 (10916): Detected: BOINC client v7.24.1
2025-07-27 18:50:09 (10916): Detected: VirtualBox VboxManage Interface (Version: 7.0.12)
2025-07-27 18:50:10 (10916): Successfully copied 'init_data.xml' to the shared directory.
2025-07-27 18:50:10 (10916): Create VM. (boinc_3a857d44c32f02d5, slot#1)
2025-07-27 18:50:11 (10916): Setting Memory Size for VM. (4800MB)
2025-07-27 18:50:11 (10916): Setting CPU Count for VM. (8)
2025-07-27 18:50:11 (10916): Setting Chipset Options for VM.
2025-07-27 18:50:12 (10916): Setting Graphics Controller Options for VM.
2025-07-27 18:50:12 (10916): Setting Boot Options for VM.
2025-07-27 18:50:12 (10916): Setting Network Configuration for NAT.
2025-07-27 18:50:12 (10916): Enabling VM Network Access.
2025-07-27 18:50:13 (10916): Disabling USB Support for VM.
2025-07-27 18:50:13 (10916): Disabling COM Port Support for VM.
2025-07-27 18:50:13 (10916): Disabling LPT Port Support for VM.
2025-07-27 18:50:13 (10916): Disabling Audio Support for VM.
2025-07-27 18:50:14 (10916): Disabling Clipboard Support for VM.
2025-07-27 18:50:14 (10916): Disabling Drag and Drop Support for VM.
2025-07-27 18:50:14 (10916): Adding storage controller(s) to VM.
2025-07-27 18:50:14 (10916): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-27 18:50:17 (10916): Adding VirtualBox Guest Additions to VM.
2025-07-27 18:50:17 (10916): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-27 18:50:18 (10916): forwarding host port 50467 to guest port 80
2025-07-27 18:50:18 (10916): Enabling remote desktop for VM.
2025-07-27 18:50:18 (10916): Required extension pack not installed, remote desktop not enabled.
2025-07-27 18:50:18 (10916): Enabling shared directory for VM.
2025-07-27 18:50:19 (10916): Starting VM using VBoxManage interface. (boinc_3a857d44c32f02d5, slot#1)
2025-07-27 18:50:24 (10916): Successfully started VM. (PID = '11496')
2025-07-27 18:50:24 (10916): Reporting VM Process ID to BOINC.
2025-07-27 18:50:24 (10916): Guest Log: BIOS: VirtualBox 7.0.12
2025-07-27 18:50:24 (10916): Guest Log: CPUID EDX: 0x178bfbff
2025-07-27 18:50:24 (10916): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-07-27 18:50:24 (10916): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-27 18:50:24 (10916): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-27 18:50:24 (10916): Detected: Web Application Enabled (http://localhost:50467)
2025-07-27 18:50:25 (10916): VM state change detected. (old = 'running', new = 'paused')
2025-07-27 18:50:29 (10916): Preference change detected
2025-07-27 18:50:29 (10916): Setting CPU throttle for VM. (90%)
2025-07-27 18:50:30 (10916): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-27 18:50:30 (10916): VM state change detected. (old = 'paused', new = 'running')
2025-07-27 18:50:31 (10916): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-27 18:50:31 (10916): Guest Log: BIOS: Booting from Hard Disk...
2025-07-27 18:50:34 (10916): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-27 18:50:34 (10916): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-27 18:50:34 (10916): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-27 18:50:34 (10916): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-27 18:50:34 (10916): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-27 18:50:34 (10916): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-27 18:50:34 (10916): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-27 18:50:34 (10916): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-27 18:50:34 (10916): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-27 18:50:34 (10916): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-27 18:50:34 (10916): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-27 18:50:34 (10916): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-27 18:50:34 (10916): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-27 18:50:34 (10916): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-27 18:50:34 (10916): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-27 18:50:34 (10916): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-27 18:50:34 (10916): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-27 18:50:34 (10916): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-27 18:50:34 (10916): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-27 18:50:34 (10916): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-27 18:50:34 (10916): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-27 18:50:34 (10916): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-27 18:50:34 (10916): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-27 18:50:34 (10916): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-27 18:50:34 (10916): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-27 18:50:34 (10916): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-27 18:50:34 (10916): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-27 18:50:34 (10916): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-27 18:50:34 (10916): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-27 18:50:34 (10916): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-27 18:50:34 (10916): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-27 18:50:34 (10916): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-27 18:50:39 (10916): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-27 18:50:39 (10916): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-27 18:50:45 (10916): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-27 18:50:45 (10916): Guest Log: 00:00:00.000132 main     Log opened 2025-07-27T18:50:39.206258000Z
2025-07-27 18:50:45 (10916): Guest Log: 00:00:00.000207 main     OS Product: Linux
2025-07-27 18:50:45 (10916): Guest Log: 00:00:00.000232 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-27 18:50:45 (10916): Guest Log: 00:00:00.000252 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-27 18:50:45 (10916): Guest Log: 00:00:00.000272 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-27 18:50:45 (10916): Guest Log: 00:00:00.000273 main     Process ID: 1367
2025-07-27 18:50:45 (10916): Guest Log: 00:00:00.000273 main     Package type: LINUX_64BITS_GENERIC
2025-07-27 18:50:45 (10916): Guest Log: 00:00:00.000897 main     5.2.32 r132073 started. Verbose level = 0
2025-07-27 18:50:46 (10916): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-27 18:50:46 (10916): Guest Log: [INFO] Mounting shared directory
2025-07-27 18:50:46 (10916): Guest Log: [INFO] Checking for init_data.xml
2025-07-27 18:50:53 (10916): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-27 18:50:53 (10916): Guest Log: [INFO] Detected branch: prod
2025-07-27 18:50:54 (10916): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-27 18:50:54 (10916): Guest Log: Copying input files
2025-07-27 18:50:55 (10916): Guest Log: Copied input files into RunAtlas.
2025-07-27 18:50:55 (10916): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-07-27 18:50:55 (10916): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-07-27 18:50:55 (10916): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-07-27 18:50:55 (10916): Guest Log: Further information can be found at the LHC@home message board.
2025-07-27 18:50:55 (10916): Guest Log: 00:00:10.006158 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 183 490 385 000ns (GuestNow=1 753 635 055 717 427 000 ns GuestLast=1 753 642 239 207 812 000 ns fSetTimeLastLoop=true )
2025-07-27 18:51:04 (10916): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-27 18:51:04 (10916): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-27 18:51:04 (10916): Guest Log: 2.6.3.0 1645 0 30184 148818 4 1 3117619 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-07-27 18:51:06 (10916): Guest Log: copied the webapp to /var/www
2025-07-27 18:51:06 (10916): Guest Log: ATHENA_PROC_NUMBER=8
2025-07-27 18:51:06 (10916): Guest Log: ATHENA_CORE_NUMBER=8
2025-07-27 18:51:06 (10916): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-27 18:51:06 (10916): Guest Log:  *** Starting ATLAS job. (PandaID=6745919385 taskID=45759065) ***
2025-07-27 19:08:41 (10916): VM state change detected. (old = 'running', new = 'paused')
2025-07-27 19:09:01 (10916): VM state change detected. (old = 'paused', new = 'running')
2025-07-27 20:00:03 (10916): VM state change detected. (old = 'running', new = 'paused')
2025-07-28 08:30:01 (10916): VM state change detected. (old = 'paused', new = 'running')
2025-07-28 08:30:04 (10916): Guest Log: 01:09:01.367885 timesync vgsvcTimeSyncWorker: Radical host time change: 45 008 758 000 000ns (HostNow=1 753 684 204 271 000 000 ns HostLast=1 753 639 195 513 000 000 ns)
2025-07-28 08:30:14 (10916): Guest Log: 01:09:11.368331 timesync vgsvcTimeSyncWorker: Radical guest time change: 45 027 258 722 000ns (GuestNow=1 753 684 214 304 680 000 ns GuestLast=1 753 639 187 045 958 000 ns fSetTimeLastLoop=true )
2025-07-28 09:00:55 (10916): Status Report: Elapsed Time: '6000.000000'
2025-07-28 09:00:55 (10916): Status Report: CPU Time: '39809.406250'
2025-07-28 09:32:42 (10916): Guest Log:  *** Job finished ***
2025-07-28 09:32:42 (10916): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-28 09:32:42 (10916): Guest Log: 2025-07-28 07:32:26,545 | INFO     | all workflow threads have been joined
2025-07-28 09:32:42 (10916): Guest Log: 2025-07-28 07:32:26,546 | INFO     | end of generic workflow (traces error code: 0)
2025-07-28 09:32:42 (10916): Guest Log: 2025-07-28 07:32:26,546 | INFO     | traces error code: 0
2025-07-28 09:32:42 (10916): Guest Log: 2025-07-28 07:32:26,546 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-28 09:32:42 (10916): Guest Log: 2025-07-28 07:32:41,798 | INFO     | PID=5999 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-07-28 09:32:42 (10916): Guest Log: 2025-07-28 07:32:41,799 | INFO     | found 0 job(s) in 20 queues
2025-07-28 09:32:42 (10916): Guest Log: 2025-07-28 07:32:41,799 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-07-28 09:32:42 (10916): Guest Log: 2025-07-28 07:32:41,799 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-07-28 09:32:42 (10916): Guest Log: 2025-07-28 07:32:41,799 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-28 09:32:42 (10916): Guest Log: 2025-07-28 07:32:41,799 | INFO     | [monitor] control thread has ended
2025-07-28 09:32:42 (10916): Guest Log: 2025-07-28 07:32:41,923 [wrapper] ==== pilot stdout END ====
2025-07-28 09:32:42 (10916): Guest Log: 2025-07-28 07:32:41,929 [wrapper] ==== wrapper stdout RESUME ====
2025-07-28 09:32:42 (10916): Guest Log: 2025-07-28 07:32:41,934 [wrapper] pilotpid: 5999
2025-07-28 09:32:42 (10916): Guest Log: 2025-07-28 07:32:41,940 [wrapper] Pilot exit status: 0
2025-07-28 09:32:42 (10916): Guest Log: 2025-07-28 07:32:42,051 [wrapper] pandaids: 6745919385
2025-07-28 09:32:42 (10916): Guest Log: 2025-07-28 07:32:42,080 [wrapper] cleanup supervisor_pilot  4422 6000
2025-07-28 09:32:42 (10916): Guest Log: 2025-07-28 07:32:42,084 [wrapper] Test setup, not cleaning
2025-07-28 09:32:42 (10916): Guest Log: 2025-07-28 07:32:42,088 [wrapper] apfmon messages muted
2025-07-28 09:32:42 (10916): Guest Log: 2025-07-28 07:32:42,093 [wrapper] ==== wrapper stdout END ====
2025-07-28 09:32:42 (10916): Guest Log: 2025-07-28 07:32:42,098 [wrapper] ==== wrapper stderr END ====
2025-07-28 09:32:42 (10916): Guest Log:  *** Error codes and diagnostics ***
2025-07-28 09:32:42 (10916): Guest Log:     "exeErrorCode": 0,
2025-07-28 09:32:42 (10916): Guest Log:     "exeErrorDiag": "",
2025-07-28 09:32:42 (10916): Guest Log:     "pilotErrorCode": 0,
2025-07-28 09:32:42 (10916): Guest Log:     "pilotErrorDiag": "",
2025-07-28 09:32:42 (10916): Guest Log:  *** Listing of results directory ***
2025-07-28 09:32:42 (10916): Guest Log: total 169392
2025-07-28 09:32:42 (10916): Guest Log: -rw-r--r--. 1 atlas atlas    530466 Jul 27 00:36 pilot3.tar.gz
2025-07-28 09:32:42 (10916): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Jul 27 00:41 queuedata.json
2025-07-28 09:32:42 (10916): Guest Log: -rwx------. 1 atlas atlas     36292 Jul 27 00:42 runpilot2-wrapper.sh
2025-07-28 09:32:42 (10916): Guest Log: -rwxr-xr-x. 1 atlas atlas      9191 Jul 27 16:50 init_data.xml
2025-07-28 09:32:42 (10916): Guest Log: -rwxr-xr-x. 1 atlas atlas    542883 Jul 27 16:50 input.tar.gz
2025-07-28 09:32:42 (10916): Guest Log: -rwxr-xr-x. 1 atlas atlas     15095 Jul 27 16:50 start_atlas.sh
2025-07-28 09:32:42 (10916): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jul 27 16:50 EVNT.45759062._000005.pool.root.1 -> /data/./ATLAS.root_0
2025-07-28 09:32:42 (10916): Guest Log: -rw-r--r--. 1 atlas atlas      2558 Jul 27 16:51 pandaJob.out
2025-07-28 09:32:42 (10916): Guest Log: -rw-------. 1 atlas atlas    980125 Jul 27 16:52 agis_schedconf.cvmfs.json
2025-07-28 09:32:42 (10916): Guest Log: drwx------. 4 atlas atlas      4096 Jul 27 16:52 pilot3
2025-07-28 09:32:42 (10916): Guest Log: -rw-------. 1 atlas atlas 167682985 Jul 28 07:31 HITS.45759065._000116.pool.root.1
2025-07-28 09:32:42 (10916): Guest Log: -rw-------. 1 atlas atlas      1032 Jul 28 07:31 memory_monitor_summary.json
2025-07-28 09:32:42 (10916): Guest Log: -rw-------. 1 atlas atlas        98 Jul 28 07:31 pilot_heartbeat.json
2025-07-28 09:32:42 (10916): Guest Log: -rw-------. 1 atlas atlas   1593052 Jul 28 07:31 agis_ddmendpoints.agis.ALL.json
2025-07-28 09:32:42 (10916): Guest Log: -rw-------. 1 atlas atlas    329339 Jul 28 07:32 log.45759065._000116.job.log.tgz.1
2025-07-28 09:32:42 (10916): Guest Log: -rw-------. 1 atlas atlas      7815 Jul 28 07:32 heartbeat.json
2025-07-28 09:32:42 (10916): Guest Log: -rw-------. 1 atlas atlas       744 Jul 28 07:32 pilotlog.txt
2025-07-28 09:32:42 (10916): Guest Log: -rw-------. 1 atlas atlas    654796 Jul 28 07:32 log.45759065._000116.job.log.1
2025-07-28 09:32:42 (10916): Guest Log: -rw-------. 1 atlas atlas       357 Jul 28 07:32 output.list
2025-07-28 09:32:42 (10916): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jul 28 07:32 runtime_log
2025-07-28 09:32:42 (10916): Guest Log: -rw-------. 1 atlas atlas   1003520 Jul 28 07:32 result.tar.gz
2025-07-28 09:32:42 (10916): Guest Log: -rw-r--r--. 1 atlas atlas      8603 Jul 28 07:32 runtime_log.err
2025-07-28 09:32:42 (10916): Guest Log: -rw-------. 1 atlas atlas       658 Jul 28 07:32 OuEMDmxd4z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmXgTLDmuwd4Mo.diag
2025-07-28 09:32:42 (10916): Guest Log: Looking for outputfile HITS.45759065._000116.pool.root.1
2025-07-28 09:32:42 (10916): Guest Log: HITS file was successfully produced
2025-07-28 09:32:42 (10916): Guest Log: -rw-------. 1 atlas atlas 167682985 Jul 28 07:31 /home/atlas/RunAtlas/HITS.45759065._000116.pool.root.1
2025-07-28 09:32:43 (10916): Guest Log: Successfully finished the ATLAS job!
2025-07-28 09:32:43 (10916): Guest Log: Copying the results back to the shared directory!
2025-07-28 09:32:43 (10916): Guest Log:  *** Contents of shared directory: ***
2025-07-28 09:32:43 (10916): Guest Log: total 396372
2025-07-28 09:32:43 (10916): Guest Log: -rwxrwxrwx. 1 root root 236620615 Jul 27 16:50 ATLAS.root_0
2025-07-28 09:32:43 (10916): Guest Log: -rwxrwxrwx. 1 root root 167682985 Jul 28 07:32 HITS.pool.root.1
2025-07-28 09:32:43 (10916): Guest Log: -rwxrwxrwx. 1 root root      9191 Jul 27 16:50 init_data.xml
2025-07-28 09:32:43 (10916): Guest Log: -rwxrwxrwx. 1 root root    542883 Jul 27 09:32 input.tar.gz
2025-07-28 09:32:43 (10916): Guest Log: -rwxrwxrwx. 1 root root   1003520 Jul 28 07:32 result.tar.gz
2025-07-28 09:32:43 (10916): Guest Log: -rwxrwxrwx. 1 root root     15095 Jul 27 09:32 start_atlas.sh
2025-07-28 09:32:43 (10916): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-28 09:32:44 (10916): VM Completion File Detected.
2025-07-28 09:32:44 (10916): Powering off VM.
2025-07-28 09:32:45 (10916): Successfully stopped VM.
2025-07-28 09:32:45 (10916): Deregistering VM. (boinc_3a857d44c32f02d5, slot#1)
2025-07-28 09:32:45 (10916): Removing network bandwidth throttle group from VM.
2025-07-28 09:32:45 (10916): Removing VM from VirtualBox.
09:32:51 (10916): called boinc_finish(0)

</stderr_txt>
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