Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:36:25 (3827877): wrapper (7.7.26015): starting
05:36:25 (3827877): wrapper: running run_atlas (--nthreads 10)
[2025-07-27 05:36:25] Arguments: --nthreads 10
[2025-07-27 05:36:25] Threads: 10
[2025-07-27 05:36:25] Checking for CVMFS
[2025-07-27 05:36:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 05:36:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 05:36:26] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 05:36:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 05:36:26] 2.13.1.0 1125174 4159 82348 148807 0 195 11761801 39288833 5910 16776704 0 9723698 99.868 4098518 38914 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 05:36:26] CVMFS is ok
[2025-07-27 05:36:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 05:36:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 05:36:26] Further information can be found at the LHC@home message board.
[2025-07-27 05:36:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 05:36:26] Checking for apptainer binary...
[2025-07-27 05:36:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 05:36:26] Running /usr/bin/apptainer --version
[2025-07-27 05:36:26] apptainer version 1.4.1-1.el9
[2025-07-27 05:36:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 05:36:26] c-210-19.aglt2.org
[2025-07-27 05:36:26] apptainer works
[2025-07-27 05:36:26] Set ATHENA_PROC_NUMBER=10
[2025-07-27 05:36:26] Set ATHENA_CORE_NUMBER=10
[2025-07-27 05:36:26] Starting ATLAS job with PandaID=6746016644
[2025-07-27 05:36:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
11:09:11 (11105): wrapper (7.7.26015): starting
11:09:11 (11105): wrapper: running run_atlas (--nthreads 10)
[2025-07-27 11:09:11] Arguments: --nthreads 10
[2025-07-27 11:09:11] Threads: 10
[2025-07-27 11:09:11] This job has been restarted, cleaning up previous attempt
[2025-07-27 11:09:11] Checking for CVMFS
[2025-07-27 11:09:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 11:09:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 11:09:11] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 11:09:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 11:09:12] 2.13.1.0 1125174 4492 88796 148815 0 299 11815158 39288833 6578 16776704 0 9967689 99.870 4109782 38873 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 11:09:12] CVMFS is ok
[2025-07-27 11:09:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 11:09:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 11:09:12] Further information can be found at the LHC@home message board.
[2025-07-27 11:09:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 11:09:12] Checking for apptainer binary...
[2025-07-27 11:09:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 11:09:12] Running /usr/bin/apptainer --version
[2025-07-27 11:09:12] apptainer version 1.4.1-1.el9
[2025-07-27 11:09:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 11:09:12] c-210-19.aglt2.org
[2025-07-27 11:09:12] apptainer works
[2025-07-27 11:09:12] Set ATHENA_PROC_NUMBER=10
[2025-07-27 11:09:12] Set ATHENA_CORE_NUMBER=10
[2025-07-27 11:09:12] Starting ATLAS job with PandaID=6746016644
[2025-07-27 11:09:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 17:38:56]  *** The last 200 lines of the pilot log: ***
[2025-07-27 17:38:56] 2025-07-27 21:38:24,165 | INFO     | fitting pss+swap vs Time
[2025-07-27 17:38:56] 2025-07-27 21:38:24,166 | INFO     | sum of square deviations: 17283625920.64929
[2025-07-27 17:38:56] 2025-07-27 21:38:24,170 | INFO     | sum of deviations: 87670879917.54976
[2025-07-27 17:38:56] 2025-07-27 21:38:24,171 | INFO     | mean x: 1753640622.4136126
[2025-07-27 17:38:56] 2025-07-27 21:38:24,171 | INFO     | mean y: 2656894.4712041887
[2025-07-27 17:38:56] 2025-07-27 21:38:24,171 | INFO     | -- intersect: -8892653449.088083
[2025-07-27 17:38:56] 2025-07-27 21:38:24,171 | INFO     | intersect: -8892653449.088083
[2025-07-27 17:38:56] 2025-07-27 21:38:24,172 | INFO     | chi2: 1.4998551529549489
[2025-07-27 17:38:56] 2025-07-27 21:38:24,172 | INFO     | sum of square deviations: 16613850033.92049
[2025-07-27 17:38:56] 2025-07-27 21:38:24,176 | INFO     | sum of deviations: 85722524912.21222
[2025-07-27 17:38:56] 2025-07-27 21:38:24,177 | INFO     | mean x: 1753640469.9257295
[2025-07-27 17:38:56] 2025-07-27 21:38:24,177 | INFO     | mean y: 2656450.8647214854
[2025-07-27 17:38:56] 2025-07-27 21:38:24,177 | INFO     | -- intersect: -9045606809.20747
[2025-07-27 17:38:56] 2025-07-27 21:38:24,177 | INFO     | intersect: -9045606809.20747
[2025-07-27 17:38:56] 2025-07-27 21:38:24,178 | INFO     | chi2: 1.5001126780958272
[2025-07-27 17:38:56] 2025-07-27 21:38:24,178 | INFO     | current chi2=1.5001126780958272 (change=-0.017170000741133232 %)
[2025-07-27 17:38:56] 2025-07-27 21:38:24,178 | INFO     | right removable region: 376
[2025-07-27 17:38:56] 2025-07-27 21:38:24,178 | INFO     | sum of square deviations: 16613637143.920483
[2025-07-27 17:38:56] 2025-07-27 21:38:24,182 | INFO     | sum of deviations: 30536888010.64722
[2025-07-27 17:38:56] 2025-07-27 21:38:24,183 | INFO     | mean x: 1753640774.9257295
[2025-07-27 17:38:56] 2025-07-27 21:38:24,183 | INFO     | mean y: 2669813.7374005304
[2025-07-27 17:38:56] 2025-07-27 21:38:24,183 | INFO     | -- intersect: -3220629906.3005877
[2025-07-27 17:38:56] 2025-07-27 21:38:24,183 | INFO     | intersect: -3220629906.3005877
[2025-07-27 17:38:56] 2025-07-27 21:38:24,184 | INFO     | chi2: 0.17458094723453368
[2025-07-27 17:38:56] 2025-07-27 21:38:24,184 | INFO     | current chi2=0.17458094723453368 (change=88.36014618541118 %)
[2025-07-27 17:38:56] 2025-07-27 21:38:24,184 | INFO     | sum of square deviations: 15961183579.57799
[2025-07-27 17:38:56] 2025-07-27 21:38:24,188 | INFO     | sum of deviations: 5237614953.884416
[2025-07-27 17:38:56] 2025-07-27 21:38:24,188 | INFO     | mean x: 1753640927.438172
[2025-07-27 17:38:56] 2025-07-27 21:38:24,188 | INFO     | mean y: 2675716.7123655914
[2025-07-27 17:38:56] 2025-07-27 21:38:24,189 | INFO     | -- intersect: -572776341.682965
[2025-07-27 17:38:56] 2025-07-27 21:38:24,189 | INFO     | intersect: -572776341.682965
[2025-07-27 17:38:56] 2025-07-27 21:38:24,189 | INFO     | chi2: 0.026640358369839363
[2025-07-27 17:38:56] 2025-07-27 21:38:24,189 | INFO     | current chi2=0.026640358369839363 (change=84.7403976253775 %)
[2025-07-27 17:38:56] 2025-07-27 21:38:24,190 | INFO     | sum of square deviations: 15326123432.681234
[2025-07-27 17:38:56] 2025-07-27 21:38:24,193 | INFO     | sum of deviations: 3912549281.430519
[2025-07-27 17:38:56] 2025-07-27 21:38:24,194 | INFO     | mean x: 1753641079.9400544
[2025-07-27 17:38:56] 2025-07-27 21:38:24,194 | INFO     | mean y: 2676033.4741144413
[2025-07-27 17:38:56] 2025-07-27 21:38:24,194 | INFO     | -- intersect: -445004502.1384167
[2025-07-27 17:38:56] 2025-07-27 21:38:24,194 | INFO     | intersect: -445004502.1384167
[2025-07-27 17:38:56] 2025-07-27 21:38:24,195 | INFO     | chi2: 0.026123150240646452
[2025-07-27 17:38:56] 2025-07-27 21:38:24,195 | INFO     | current chi2=0.026123150240646452 (change=1.9414458394766336 %)
[2025-07-27 17:38:56] 2025-07-27 21:38:24,195 | INFO     | left removable region: 30
[2025-07-27 17:38:56] 2025-07-27 21:38:24,196 | INFO     | sum of square deviations: 12842749091.84966
[2025-07-27 17:38:56] 2025-07-27 21:38:24,199 | INFO     | sum of deviations: 3787333652.479761
[2025-07-27 17:38:56] 2025-07-27 21:38:24,199 | INFO     | mean x: 1753641354.4566474
[2025-07-27 17:38:56] 2025-07-27 21:38:24,199 | INFO     | mean y: 2675564.465317919
[2025-07-27 17:38:56] 2025-07-27 21:38:24,199 | INFO     | -- intersect: -514474219.32425994
[2025-07-27 17:38:56] 2025-07-27 21:38:24,200 | INFO     | intersect: -514474219.32425994
[2025-07-27 17:38:56] 2025-07-27 21:38:24,200 | INFO     | chi2: 0.025608343493554835
[2025-07-27 17:38:56] 2025-07-27 21:38:24,200 | INFO     | -- intersect: -514474219.32425994
[2025-07-27 17:38:56] 2025-07-27 21:38:24,200 | INFO     | current memory leak: 0.29 B/s (using 346 data points, chi2=0.03)
[2025-07-27 17:38:56] 2025-07-27 21:38:24,201 | INFO     | could have reported an average CPU frequency of 2579 MHz (14 samples)
[2025-07-27 17:38:56] 2025-07-27 21:38:24,202 | INFO     | ..............................
[2025-07-27 17:38:56] 2025-07-27 21:38:24,202 | INFO     | . Timing measurements:
[2025-07-27 17:38:56] 2025-07-27 21:38:24,202 | INFO     | . get job = 0 s
[2025-07-27 17:38:56] 2025-07-27 21:38:24,202 | INFO     | . initial setup = 2 s
[2025-07-27 17:38:56] 2025-07-27 21:38:24,202 | INFO     | . payload setup = 9 s
[2025-07-27 17:38:56] 2025-07-27 21:38:24,202 | INFO     | . stage-in = 0 s
[2025-07-27 17:38:56] 2025-07-27 21:38:24,202 | INFO     | . payload execution = 23297 s
[2025-07-27 17:38:56] 2025-07-27 21:38:24,202 | INFO     | . stage-out = 2 s
[2025-07-27 17:38:56] 2025-07-27 21:38:24,202 | INFO     | . log creation = 0 s
[2025-07-27 17:38:56] 2025-07-27 21:38:24,202 | INFO     | ..............................
[2025-07-27 17:38:56] 2025-07-27 21:38:24,664 | INFO     | 
[2025-07-27 17:38:56] 2025-07-27 21:38:24,664 | INFO     | job summary report
[2025-07-27 17:38:56] 2025-07-27 21:38:24,665 | INFO     | --------------------------------------------------
[2025-07-27 17:38:56] 2025-07-27 21:38:24,665 | INFO     | PanDA job id: 6746016644
[2025-07-27 17:38:56] 2025-07-27 21:38:24,665 | INFO     | task id: 45759764
[2025-07-27 17:38:56] 2025-07-27 21:38:24,665 | INFO     | errors: (none)
[2025-07-27 17:38:56] 2025-07-27 21:38:24,665 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 17:38:56] 2025-07-27 21:38:24,665 | INFO     | pilot state: finished 
[2025-07-27 17:38:56] 2025-07-27 21:38:24,665 | INFO     | transexitcode: 0
[2025-07-27 17:38:56] 2025-07-27 21:38:24,665 | INFO     | exeerrorcode: 0
[2025-07-27 17:38:56] 2025-07-27 21:38:24,666 | INFO     | exeerrordiag: 
[2025-07-27 17:38:56] 2025-07-27 21:38:24,666 | INFO     | exitcode: 0
[2025-07-27 17:38:56] 2025-07-27 21:38:24,666 | INFO     | exitmsg: OK
[2025-07-27 17:38:56] 2025-07-27 21:38:24,666 | INFO     | cpuconsumptiontime: 75003 s
[2025-07-27 17:38:56] 2025-07-27 21:38:24,666 | INFO     | nevents: 400
[2025-07-27 17:38:56] 2025-07-27 21:38:24,666 | INFO     | neventsw: 0
[2025-07-27 17:38:56] 2025-07-27 21:38:24,666 | INFO     | pid: 27961
[2025-07-27 17:38:56] 2025-07-27 21:38:24,666 | INFO     | pgrp: 27961
[2025-07-27 17:38:56] 2025-07-27 21:38:24,666 | INFO     | corecount: 10
[2025-07-27 17:38:56] 2025-07-27 21:38:24,666 | INFO     | event service: False
[2025-07-27 17:38:56] 2025-07-27 21:38:24,667 | INFO     | sizes: {0: 2397300, 1: 2397499, 7: 2397761, 12: 2397789, 23310: 2430276, 23313: 2439274, 23314: 2439458, 23320: 2439482}
[2025-07-27 17:38:56] 2025-07-27 21:38:24,667 | INFO     | --------------------------------------------------
[2025-07-27 17:38:56] 2025-07-27 21:38:24,667 | INFO     | 
[2025-07-27 17:38:56] 2025-07-27 21:38:24,667 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 17:38:56] 2025-07-27 21:38:24,696 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 17:38:56] 2025-07-27 21:38:24,696 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 17:38:56] 2025-07-27 21:38:24,697 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 17:38:56] 2025-07-27 21:38:24,697 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 17:38:56] 2025-07-27 21:38:24,697 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 17:38:56] 2025-07-27 21:38:24,697 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 17:38:56] 2025-07-27 21:38:24,697 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 17:38:56] 2025-07-27 21:38:24,697 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 17:38:56] 2025-07-27 21:38:24,697 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 17:38:56] 2025-07-27 21:38:24,697 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 17:38:56] 2025-07-27 21:38:24,697 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 17:38:56] 2025-07-27 21:38:24,698 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 17:38:56] 2025-07-27 21:38:24,698 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 17:38:56] 2025-07-27 21:38:24,698 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 17:38:56] 2025-07-27 21:38:24,698 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 17:38:56] 2025-07-27 21:38:24,698 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 17:38:56] 2025-07-27 21:38:24,698 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 17:38:56] 2025-07-27 21:38:24,698 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 17:38:56] 2025-07-27 21:38:24,698 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 17:38:56] 2025-07-27 21:38:24,699 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 17:38:56] 2025-07-27 21:38:24,699 | INFO     | job 6746016644 has completed (purged errors)
[2025-07-27 17:38:56] 2025-07-27 21:38:24,699 | INFO     | overall cleanup function is called
[2025-07-27 17:38:56] 2025-07-27 21:38:25,709 | INFO     | --- collectZombieJob: --- 10, [27961]
[2025-07-27 17:38:56] 2025-07-27 21:38:25,709 | INFO     | zombie collector waiting for pid 27961
[2025-07-27 17:38:56] 2025-07-27 21:38:25,709 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 17:38:56] 2025-07-27 21:38:25,709 | INFO     | collected zombie processes
[2025-07-27 17:38:56] 2025-07-27 21:38:25,710 | INFO     | will attempt to kill all subprocesses of pid=27961
[2025-07-27 17:38:56] 2025-07-27 21:38:25,959 | INFO     | process IDs to be killed: [27961] (in reverse order)
[2025-07-27 17:38:56] 2025-07-27 21:38:26,037 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 17:38:56] 2025-07-27 21:38:26,038 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 17:38:56] 2025-07-27 21:38:26,049 | INFO     | did not find any defunct processes belonging to 27961
[2025-07-27 17:38:56] 2025-07-27 21:38:26,061 | INFO     | did not find any defunct processes belonging to 27961
[2025-07-27 17:38:56] 2025-07-27 21:38:26,061 | INFO     | ready for new job
[2025-07-27 17:38:56] 2025-07-27 21:38:26,061 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 17:38:56] 2025-07-27 21:38:26,064 | INFO     | ***************************************
[2025-07-27 17:38:56] 2025-07-27 21:38:26,065 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 17:38:56] 2025-07-27 21:38:26,065 | INFO     | ***************************************
[2025-07-27 17:38:56] 2025-07-27 21:38:26,065 | INFO     | 
[2025-07-27 17:38:56] 2025-07-27 21:38:26,067 | INFO     | architecture information:
[2025-07-27 17:38:56] 2025-07-27 21:38:26,068 | INFO     | executing command: cat /etc/os-release
[2025-07-27 17:38:56] 2025-07-27 21:38:26,088 | INFO     | cat /etc/os-release:
[2025-07-27 17:38:56] NAME="CentOS Linux"
[2025-07-27 17:38:56] VERSION="7 (Core)"
[2025-07-27 17:38:56] ID="centos"
[2025-07-27 17:38:56] ID_LIKE="rhel fedora"
[2025-07-27 17:38:56] VERSION_ID="7"
[2025-07-27 17:38:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 17:38:56] ANSI_COLOR="0;31"
[2025-07-27 17:38:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 17:38:56] HOME_URL="https://www.centos.org/"
[2025-07-27 17:38:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 17:38:56] 
[2025-07-27 17:38:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 17:38:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 17:38:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 17:38:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 17:38:56] 
[2025-07-27 17:38:56] 2025-07-27 21:38:26,088 | INFO     | ***************************************
[2025-07-27 17:38:56] 2025-07-27 21:38:26,592 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 17:38:56] 2025-07-27 21:38:26,614 | INFO     | sufficient remaining disk space (53694431232 B)
[2025-07-27 17:38:56] 2025-07-27 21:38:26,615 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 17:38:56] 2025-07-27 21:38:26,615 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 17:38:56] 2025-07-27 21:38:26,615 | INFO     | update_server=False
[2025-07-27 17:38:56] 2025-07-27 21:38:26,615 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 17:38:56] 2025-07-27 21:38:26,645 | INFO     | all data control threads have been joined
[2025-07-27 17:38:56] 2025-07-27 21:38:26,792 | INFO     | all job control threads have been joined
[2025-07-27 17:38:56] 2025-07-27 21:38:26,916 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-27 17:38:56] 2025-07-27 21:38:26,916 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-27 17:38:56] 2025-07-27 21:38:26,916 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 17:38:56] 2025-07-27 21:38:26,916 | INFO     | will abort loop
[2025-07-27 17:38:56] 2025-07-27 21:38:27,621 | INFO     | [job] retrieve thread has finished
[2025-07-27 17:38:56] 2025-07-27 21:38:27,650 | INFO     | [data] control thread has finished
[2025-07-27 17:38:56] 2025-07-27 21:38:27,671 | INFO     | all payload control threads have been joined
[2025-07-27 17:38:56] 2025-07-27 21:38:27,678 | INFO     | [data] copytool_in thread has finished
[2025-07-27 17:38:56] 2025-07-27 21:38:27,728 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 17:38:56] 2025-07-27 21:38:27,797 | INFO     | [job] control thread has finished
[2025-07-27 17:38:56] 2025-07-27 21:38:27,922 | INFO     | [job] job monitor thread has finished
[2025-07-27 17:38:56] 2025-07-27 21:38:28,091 | INFO     | [job] validate thread has finished
[2025-07-27 17:38:56] 2025-07-27 21:38:28,256 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 17:38:56] 2025-07-27 21:38:28,381 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 17:38:56] 2025-07-27 21:38:28,610 | INFO     | [payload] validate_post thread has finished
[2025-07-27 17:38:56] 2025-07-27 21:38:28,676 | INFO     | [payload] control thread has finished
[2025-07-27 17:38:56] 2025-07-27 21:38:28,891 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 17:38:56] 2025-07-27 21:38:29,046 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 17:38:56] 2025-07-27 21:38:29,212 | INFO     | [payload] failed_post thread has finished
[2025-07-27 17:38:56] 2025-07-27 21:38:29,329 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 17:38:56] 2025-07-27 21:38:29,733 | INFO     | [data] copytool_out thread has finished
[2025-07-27 17:38:56] 2025-07-27 21:38:30,334 | INFO     | [job] queue monitor thread has finished
[2025-07-27 17:38:56] 2025-07-27 21:38:32,382 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 17:38:56] 2025-07-27 21:38:37,317 | INFO     | job.realtimelogging is not enabled
[2025-07-27 17:38:56] 2025-07-27 21:38:38,322 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 17:38:56] 2025-07-27 21:38:38,714 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140466996438848)>', '<ExcThread(monitor, started 140466714543872)>']
[2025-07-27 17:38:56] 2025-07-27 21:38:43,739 | INFO     | all workflow threads have been joined
[2025-07-27 17:38:56] 2025-07-27 21:38:43,739 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 17:38:56] 2025-07-27 21:38:43,739 | INFO     | traces error code: 0
[2025-07-27 17:38:56] 2025-07-27 21:38:43,740 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 17:38:56] 2025-07-27 21:38:56,212 | INFO     | PID=16144 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-27 17:38:56] 2025-07-27 21:38:56,213 | INFO     | .. there are 5 such processes running
[2025-07-27 17:38:56] 2025-07-27 21:38:56,214 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 17:38:56] 2025-07-27 21:38:56,214 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 17:38:56] 2025-07-27 21:38:56,215 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 17:38:56] 2025-07-27 21:38:56,215 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 17:38:56] 2025-07-27 21:38:56,215 | CRITICAL | thread 'MainThread' is not alive
[2025-07-27 17:38:56] 2025-07-27 21:38:56,215 | INFO     | [monitor] control thread has ended
[2025-07-27 17:38:56] 2025-07-27 21:38:56,470 [wrapper] ==== pilot stdout END ====
[2025-07-27 17:38:56] 2025-07-27 21:38:56,474 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 17:38:56] 2025-07-27 21:38:56,478 [wrapper] pilotpid: 16144
[2025-07-27 17:38:56] 2025-07-27 21:38:56,483 [wrapper] Pilot exit status: 0
[2025-07-27 17:38:56] 2025-07-27 21:38:56,499 [wrapper] pandaids: 6746016644 6746016644
[2025-07-27 17:38:56] 2025-07-27 21:38:56,558 [wrapper] cleanup supervisor_pilot  446008 16145
[2025-07-27 17:38:56] 2025-07-27 21:38:56,562 [wrapper] Test setup, not cleaning
[2025-07-27 17:38:56] 2025-07-27 21:38:56,566 [wrapper] apfmon messages muted
[2025-07-27 17:38:56] 2025-07-27 21:38:56,570 [wrapper] ==== wrapper stdout END ====
[2025-07-27 17:38:56] 2025-07-27 21:38:56,575 [wrapper] ==== wrapper stderr END ====
[2025-07-27 17:38:56]  *** Error codes and diagnostics ***
[2025-07-27 17:38:56]     "exeErrorCode": 0,
[2025-07-27 17:38:56]     "exeErrorDiag": "",
[2025-07-27 17:38:56]     "pilotErrorCode": 0,
[2025-07-27 17:38:56]     "pilotErrorDiag": "",
[2025-07-27 17:38:56]  *** Listing of results directory ***
[2025-07-27 17:38:56] total 646944
[2025-07-27 17:38:56] drwx------. 4 boincer umatlas      4096 Jun 17 06:04 pilot3
[2025-07-27 17:38:56] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 00:20 pilot3.tar.gz
[2025-07-27 17:38:56] -rwx------. 1 boincer umatlas     36292 Jul 27 00:34 runpilot2-wrapper.sh
[2025-07-27 17:38:56] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 00:34 queuedata.json
[2025-07-27 17:38:56] -rw-r--r--. 1 boincer umatlas       100 Jul 27 05:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 17:38:56] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 05:36 run_atlas
[2025-07-27 17:38:56] -rw-r--r--. 1 boincer umatlas       105 Jul 27 05:36 job.xml
[2025-07-27 17:38:56] -rw-r--r--. 3 boincer umatlas 238139304 Jul 27 05:36 EVNT.45759762._000001.pool.root.1
[2025-07-27 17:38:56] -rw-r--r--. 3 boincer umatlas 238139304 Jul 27 05:36 ATLAS.root_0
[2025-07-27 17:38:56] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 05:36 start_atlas.sh
[2025-07-27 17:38:56] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 05:36 shared
[2025-07-27 17:38:56] -rw-r--r--. 2 boincer umatlas    542876 Jul 27 05:36 input.tar.gz
[2025-07-27 17:38:56] -rw-r--r--. 1 boincer umatlas         0 Jul 27 05:36 boinc_lockfile
[2025-07-27 17:38:56] -rw-r--r--. 1 boincer umatlas      2565 Jul 27 11:09 pandaJob.out
[2025-07-27 17:38:56] -rw-------. 1 boincer umatlas    980109 Jul 27 11:09 agis_schedconf.cvmfs.json
[2025-07-27 17:38:56] -rw-r--r--. 1 boincer umatlas      6708 Jul 27 17:37 init_data.xml
[2025-07-27 17:38:56] -rw-------. 1 boincer umatlas 178241273 Jul 27 17:37 HITS.45759764._000023.pool.root.1
[2025-07-27 17:38:56] -rw-r--r--. 1 boincer umatlas       532 Jul 27 17:37 boinc_task_state.xml
[2025-07-27 17:38:56] -rw-------. 1 boincer umatlas      1048 Jul 27 17:38 memory_monitor_summary.json
[2025-07-27 17:38:56] -rw-------. 1 boincer umatlas   1593052 Jul 27 17:38 agis_ddmendpoints.agis.ALL.json
[2025-07-27 17:38:56] -rw-------. 1 boincer umatlas    479306 Jul 27 17:38 log.45759764._000023.job.log.tgz.1
[2025-07-27 17:38:56] -rw-------. 1 boincer umatlas      7826 Jul 27 17:38 heartbeat.json
[2025-07-27 17:38:56] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 17:38 boinc_mmap_file
[2025-07-27 17:38:56] -rw-r--r--. 1 boincer umatlas        29 Jul 27 17:38 wrapper_checkpoint.txt
[2025-07-27 17:38:56] -rw-------. 1 boincer umatlas        96 Jul 27 17:38 pilot_heartbeat.json
[2025-07-27 17:38:56] -rw-------. 1 boincer umatlas       890 Jul 27 17:38 pilotlog.txt
[2025-07-27 17:38:56] -rw-------. 1 boincer umatlas   1555534 Jul 27 17:38 log.45759764._000023.job.log.1
[2025-07-27 17:38:56] -rw-------. 1 boincer umatlas       357 Jul 27 17:38 output.list
[2025-07-27 17:38:56] -rw-r--r--. 1 boincer umatlas       620 Jul 27 17:38 runtime_log
[2025-07-27 17:38:56] -rw-------. 1 boincer umatlas   2058240 Jul 27 17:38 result.tar.gz
[2025-07-27 17:38:56] -rw-------. 1 boincer umatlas       785 Jul 27 17:38 vp3NDmvG8z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmXDULDmXLhgNn.diag
[2025-07-27 17:38:56] -rw-r--r--. 1 boincer umatlas      8748 Jul 27 17:38 runtime_log.err
[2025-07-27 17:38:56] -rw-r--r--. 1 boincer umatlas     23163 Jul 27 17:38 stderr.txt
[2025-07-27 17:38:56] HITS file was successfully produced:
[2025-07-27 17:38:56] -rw-------. 1 boincer umatlas 178241273 Jul 27 17:37 shared/HITS.pool.root.1
[2025-07-27 17:38:56]  *** Contents of shared directory: ***
[2025-07-27 17:38:56] total 409188
[2025-07-27 17:38:56] -rw-r--r--. 3 boincer umatlas 238139304 Jul 27 05:36 ATLAS.root_0
[2025-07-27 17:38:56] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 05:36 start_atlas.sh
[2025-07-27 17:38:56] -rw-r--r--. 2 boincer umatlas    542876 Jul 27 05:36 input.tar.gz
[2025-07-27 17:38:56] -rw-------. 1 boincer umatlas 178241273 Jul 27 17:37 HITS.pool.root.1
[2025-07-27 17:38:56] -rw-------. 1 boincer umatlas   2058240 Jul 27 17:38 result.tar.gz
17:38:57 (11105): run_atlas exited; CPU time 75385.075897
17:38:57 (11105): called boinc_finish(0)

</stderr_txt>
]]>

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