Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:12:45 (985001): wrapper (7.7.26015): starting
07:12:45 (985001): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 07:12:45] Arguments: --nthreads 12
[2025-07-27 07:12:45] Threads: 12
[2025-07-27 07:12:45] Checking for CVMFS
[2025-07-27 07:12:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 07:12:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 07:12:45] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 07:12:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 07:12:45] 2.12.6.0 1267368 18285 327344 148810 1 64 19533695 32935936 9554 16776704 0 33982346 99.698 64468204 29463 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 07:12:45] CVMFS is ok
[2025-07-27 07:12:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 07:12:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 07:12:45] Further information can be found at the LHC@home message board.
[2025-07-27 07:12:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 07:12:45] Checking for apptainer binary...
[2025-07-27 07:12:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 07:12:45] Running /usr/bin/apptainer --version
[2025-07-27 07:12:45] apptainer version 1.4.1-1.el9
[2025-07-27 07:12:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 07:12:45] c6-2-29-3.aglt2.org
[2025-07-27 07:12:45] apptainer works
[2025-07-27 07:12:45] Set ATHENA_PROC_NUMBER=12
[2025-07-27 07:12:45] Set ATHENA_CORE_NUMBER=12
[2025-07-27 07:12:45] Starting ATLAS job with PandaID=6746016625
[2025-07-27 07:12:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 08:45:12]  *** The last 200 lines of the pilot log: ***
[2025-07-27 08:45:12]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 08:45:12]  replicas=None
[2025-07-27 08:45:12]  scope=mc23_13p6TeV
[2025-07-27 08:45:12]  status=None
[2025-07-27 08:45:12]  status_code=0
[2025-07-27 08:45:12]  storage_token=
[2025-07-27 08:45:12]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6746016625/log.45759764._000004.job.log.tgz.1
[2025-07-27 08:45:12]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/70/ba/log.45759764._000004.job.log.tgz.1
[2025-07-27 08:45:12]  workdir=None
[2025-07-27 08:45:12] ]
[2025-07-27 08:45:12] 2025-07-27 12:44:30,848 | INFO     | transferring file log.45759764._000004.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6746016625/log.45759764._000004.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 08:45:12] 2025-07-27 12:44:30,849 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6746016625/log.45759764._000004.job.log.tgz.1 /tmp/boinchome/slots/0/log.45759764._000004.job
[2025-07-27 08:45:12] 2025-07-27 12:44:30,873 | INFO     | adding to output.list: log.45759764._000004.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/70/ba/log.45759764._000004.job.log.tg
[2025-07-27 08:45:12] 2025-07-27 12:44:30,874 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 08:45:12] 2025-07-27 12:44:30,874 | INFO     | summary of transferred files:
[2025-07-27 08:45:12] 2025-07-27 12:44:30,874 | INFO     |  -- lfn=log.45759764._000004.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 08:45:12] 2025-07-27 12:44:30,874 | INFO     | stage-out finished correctly
[2025-07-27 08:45:12] 2025-07-27 12:44:30,996 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 08:45:12] 2025-07-27 12:44:31,259 | WARNING  | process 996178 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 08:45:12] 2025-07-27 12:44:31,259 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6746016625/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 08:45:12] 2025-07-27 12:44:31,260 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6746016625/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 08:45:12] 2025-07-27 12:44:31,528 | INFO     | number of running child processes to parent process 996178: 1
[2025-07-27 08:45:12] 2025-07-27 12:44:31,528 | INFO     | maximum number of monitored processes: 6
[2025-07-27 08:45:12] 2025-07-27 12:44:33,442 | INFO     | job 6746016625 has state=finished
[2025-07-27 08:45:12] 2025-07-27 12:44:33,443 | INFO     | preparing for final server update for job 6746016625 in state='finished'
[2025-07-27 08:45:12] 2025-07-27 12:44:33,443 | INFO     | this job has now completed (state=finished)
[2025-07-27 08:45:12] 2025-07-27 12:44:33,443 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 08:45:12] 2025-07-27 12:44:33,444 | INFO     | log transfer has been attempted: DONE
[2025-07-27 08:45:12] 2025-07-27 12:44:33,444 | INFO     | job 6746016625 has finished - writing final server update
[2025-07-27 08:45:12] 2025-07-27 12:44:33,444 | INFO     | total number of processed events: 400 (read)
[2025-07-27 08:45:12] 2025-07-27 12:44:33,445 | INFO     | executing command: lscpu
[2025-07-27 08:45:12] 2025-07-27 12:44:33,511 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 08:45:12] 2025-07-27 12:44:34,032 | INFO     | monitor loop #394: job 0:6746016625 is in state 'finished'
[2025-07-27 08:45:12] 2025-07-27 12:44:34,033 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 08:45:12] 2025-07-27 12:44:36,536 | INFO     | monitor loop #395: job 0:6746016625 is in state 'finished'
[2025-07-27 08:45:12] 2025-07-27 12:44:36,536 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 08:45:12] 2025-07-27 12:44:38,253 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 08:45:12] 2025-07-27 12:44:38,270 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2692.970660714286
[2025-07-27 08:45:12] 2025-07-27 12:44:38,279 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6746016625/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 08:45:12] 2025-07-27 12:44:38,279 | INFO     | extracted standard info from prmon json
[2025-07-27 08:45:12] 2025-07-27 12:44:38,279 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 08:45:12] 2025-07-27 12:44:38,279 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 08:45:12] 2025-07-27 12:44:38,280 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 08:45:12] 2025-07-27 12:44:38,280 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 08:45:12] 2025-07-27 12:44:38,282 | INFO     | fitting pss+swap vs Time
[2025-07-27 08:45:12] 2025-07-27 12:44:38,282 | INFO     | sum of square deviations: 177275882.0
[2025-07-27 08:45:12] 2025-07-27 12:44:38,283 | INFO     | sum of deviations: 1773428660.9999998
[2025-07-27 08:45:12] 2025-07-27 12:44:38,283 | INFO     | mean x: 1753617615.0
[2025-07-27 08:45:12] 2025-07-27 12:44:38,283 | INFO     | mean y: 2378323.0722891567
[2025-07-27 08:45:12] 2025-07-27 12:44:38,283 | INFO     | -- intersect: -17540423911.4441
[2025-07-27 08:45:12] 2025-07-27 12:44:38,283 | INFO     | intersect: -17540423911.4441
[2025-07-27 08:45:12] 2025-07-27 12:44:38,283 | INFO     | chi2: 0.035785961079840965
[2025-07-27 08:45:12] 2025-07-27 12:44:38,283 | INFO     | -- intersect: -17540423911.4441
[2025-07-27 08:45:12] 2025-07-27 12:44:38,283 | INFO     | current memory leak: 10.00 B/s (using 83 data points, chi2=0.04)
[2025-07-27 08:45:12] 2025-07-27 12:44:38,284 | INFO     | could have reported an average CPU frequency of 2617 MHz (7 samples)
[2025-07-27 08:45:12] 2025-07-27 12:44:38,284 | INFO     | ..............................
[2025-07-27 08:45:12] 2025-07-27 12:44:38,284 | INFO     | . Timing measurements:
[2025-07-27 08:45:12] 2025-07-27 12:44:38,284 | INFO     | . get job = 0 s
[2025-07-27 08:45:12] 2025-07-27 12:44:38,284 | INFO     | . initial setup = 2 s
[2025-07-27 08:45:12] 2025-07-27 12:44:38,284 | INFO     | . payload setup = 8 s
[2025-07-27 08:45:12] 2025-07-27 12:44:38,284 | INFO     | . stage-in = 0 s
[2025-07-27 08:45:12] 2025-07-27 12:44:38,284 | INFO     | . payload execution = 5461 s
[2025-07-27 08:45:12] 2025-07-27 12:44:38,284 | INFO     | . stage-out = 0 s
[2025-07-27 08:45:12] 2025-07-27 12:44:38,284 | INFO     | . log creation = 0 s
[2025-07-27 08:45:12] 2025-07-27 12:44:38,284 | INFO     | ..............................
[2025-07-27 08:45:12] 2025-07-27 12:44:38,637 | INFO     | 
[2025-07-27 08:45:12] 2025-07-27 12:44:38,637 | INFO     | job summary report
[2025-07-27 08:45:12] 2025-07-27 12:44:38,638 | INFO     | --------------------------------------------------
[2025-07-27 08:45:12] 2025-07-27 12:44:38,638 | INFO     | PanDA job id: 6746016625
[2025-07-27 08:45:12] 2025-07-27 12:44:38,638 | INFO     | task id: 45759764
[2025-07-27 08:45:12] 2025-07-27 12:44:38,638 | INFO     | errors: (none)
[2025-07-27 08:45:12] 2025-07-27 12:44:38,638 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 08:45:12] 2025-07-27 12:44:38,638 | INFO     | pilot state: finished 
[2025-07-27 08:45:12] 2025-07-27 12:44:38,638 | INFO     | transexitcode: 0
[2025-07-27 08:45:12] 2025-07-27 12:44:38,638 | INFO     | exeerrorcode: 0
[2025-07-27 08:45:12] 2025-07-27 12:44:38,638 | INFO     | exeerrordiag: 
[2025-07-27 08:45:12] 2025-07-27 12:44:38,638 | INFO     | exitcode: 0
[2025-07-27 08:45:12] 2025-07-27 12:44:38,638 | INFO     | exitmsg: OK
[2025-07-27 08:45:12] 2025-07-27 12:44:38,638 | INFO     | cpuconsumptiontime: 58092 s
[2025-07-27 08:45:12] 2025-07-27 12:44:38,639 | INFO     | nevents: 400
[2025-07-27 08:45:12] 2025-07-27 12:44:38,639 | INFO     | neventsw: 0
[2025-07-27 08:45:12] 2025-07-27 12:44:38,639 | INFO     | pid: 996178
[2025-07-27 08:45:12] 2025-07-27 12:44:38,639 | INFO     | pgrp: 996178
[2025-07-27 08:45:12] 2025-07-27 12:44:38,639 | INFO     | corecount: 12
[2025-07-27 08:45:12] 2025-07-27 12:44:38,639 | INFO     | event service: False
[2025-07-27 08:45:12] 2025-07-27 12:44:38,639 | INFO     | sizes: {0: 2397467, 6: 2397729, 11: 2397757, 5474: 2424197, 5476: 2433251, 5483: 2433389}
[2025-07-27 08:45:12] 2025-07-27 12:44:38,639 | INFO     | --------------------------------------------------
[2025-07-27 08:45:12] 2025-07-27 12:44:38,639 | INFO     | 
[2025-07-27 08:45:12] 2025-07-27 12:44:38,639 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 08:45:12] 2025-07-27 12:44:38,660 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 08:45:12] 2025-07-27 12:44:38,660 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 08:45:12] 2025-07-27 12:44:38,660 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 08:45:12] 2025-07-27 12:44:38,660 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 08:45:12] 2025-07-27 12:44:38,660 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 08:45:12] 2025-07-27 12:44:38,661 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 08:45:12] 2025-07-27 12:44:38,661 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 08:45:12] 2025-07-27 12:44:38,661 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 08:45:12] 2025-07-27 12:44:38,661 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 08:45:12] 2025-07-27 12:44:38,661 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 08:45:12] 2025-07-27 12:44:38,661 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 08:45:12] 2025-07-27 12:44:38,661 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 08:45:12] 2025-07-27 12:44:38,661 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 08:45:12] 2025-07-27 12:44:38,661 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 08:45:12] 2025-07-27 12:44:38,661 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 08:45:12] 2025-07-27 12:44:38,661 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 08:45:12] 2025-07-27 12:44:38,661 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 08:45:12] 2025-07-27 12:44:38,661 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 08:45:12] 2025-07-27 12:44:38,661 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 08:45:12] 2025-07-27 12:44:38,662 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 08:45:12] 2025-07-27 12:44:38,662 | INFO     | job 6746016625 has completed (purged errors)
[2025-07-27 08:45:12] 2025-07-27 12:44:38,662 | INFO     | overall cleanup function is called
[2025-07-27 08:45:12] 2025-07-27 12:44:39,669 | INFO     | --- collectZombieJob: --- 10, [996178]
[2025-07-27 08:45:12] 2025-07-27 12:44:39,670 | INFO     | zombie collector waiting for pid 996178
[2025-07-27 08:45:12] 2025-07-27 12:44:39,670 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 08:45:12] 2025-07-27 12:44:39,670 | INFO     | collected zombie processes
[2025-07-27 08:45:12] 2025-07-27 12:44:39,670 | INFO     | will attempt to kill all subprocesses of pid=996178
[2025-07-27 08:45:12] 2025-07-27 12:44:39,918 | INFO     | process IDs to be killed: [996178] (in reverse order)
[2025-07-27 08:45:12] 2025-07-27 12:44:40,020 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 08:45:12] 2025-07-27 12:44:40,020 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 08:45:12] 2025-07-27 12:44:40,031 | INFO     | did not find any defunct processes belonging to 996178
[2025-07-27 08:45:12] 2025-07-27 12:44:40,042 | INFO     | did not find any defunct processes belonging to 996178
[2025-07-27 08:45:12] 2025-07-27 12:44:40,043 | INFO     | ready for new job
[2025-07-27 08:45:12] 2025-07-27 12:44:40,043 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 08:45:12] 2025-07-27 12:44:40,045 | INFO     | ***************************************
[2025-07-27 08:45:12] 2025-07-27 12:44:40,045 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 08:45:12] 2025-07-27 12:44:40,045 | INFO     | ***************************************
[2025-07-27 08:45:12] 2025-07-27 12:44:40,045 | INFO     | 
[2025-07-27 08:45:12] 2025-07-27 12:44:40,061 | INFO     | architecture information:
[2025-07-27 08:45:12] 2025-07-27 12:44:40,062 | INFO     | executing command: cat /etc/os-release
[2025-07-27 08:45:12] 2025-07-27 12:44:40,076 | INFO     | cat /etc/os-release:
[2025-07-27 08:45:12] NAME="CentOS Linux"
[2025-07-27 08:45:12] VERSION="7 (Core)"
[2025-07-27 08:45:12] ID="centos"
[2025-07-27 08:45:12] ID_LIKE="rhel fedora"
[2025-07-27 08:45:12] VERSION_ID="7"
[2025-07-27 08:45:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 08:45:12] ANSI_COLOR="0;31"
[2025-07-27 08:45:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 08:45:12] HOME_URL="https://www.centos.org/"
[2025-07-27 08:45:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 08:45:12] 
[2025-07-27 08:45:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 08:45:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 08:45:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 08:45:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 08:45:12] 
[2025-07-27 08:45:12] 2025-07-27 12:44:40,077 | INFO     | ***************************************
[2025-07-27 08:45:12] 2025-07-27 12:44:40,579 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 08:45:12] 2025-07-27 12:44:40,597 | INFO     | sufficient remaining disk space (76281806848 B)
[2025-07-27 08:45:12] 2025-07-27 12:44:40,598 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 08:45:12] 2025-07-27 12:44:40,598 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 08:45:12] 2025-07-27 12:44:40,598 | INFO     | update_server=False
[2025-07-27 08:45:12] 2025-07-27 12:44:40,598 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 08:45:12] 2025-07-27 12:44:40,599 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 08:45:12] 2025-07-27 12:44:40,599 | INFO     | aborting loop
[2025-07-27 08:45:12] 2025-07-27 12:44:40,803 | INFO     | all payload control threads have been joined
[2025-07-27 08:45:12] 2025-07-27 12:44:41,276 | INFO     | all data control threads have been joined
[2025-07-27 08:45:12] 2025-07-27 12:44:41,476 | INFO     | all job control threads have been joined
[2025-07-27 08:45:12] 2025-07-27 12:44:41,508 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 08:45:12] 2025-07-27 12:44:41,579 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 08:45:12] 2025-07-27 12:44:41,603 | INFO     | [job] retrieve thread has finished
[2025-07-27 08:45:12] 2025-07-27 12:44:41,604 | INFO     | [job] job monitor thread has finished
[2025-07-27 08:45:12] 2025-07-27 12:44:41,755 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 08:45:12] 2025-07-27 12:44:41,808 | INFO     | [payload] control thread has finished
[2025-07-27 08:45:12] 2025-07-27 12:44:42,067 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 08:45:12] 2025-07-27 12:44:42,145 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 08:45:12] 2025-07-27 12:44:42,255 | INFO     | [data] copytool_in thread has finished
[2025-07-27 08:45:12] 2025-07-27 12:44:42,282 | INFO     | [data] control thread has finished
[2025-07-27 08:45:12] 2025-07-27 12:44:42,459 | INFO     | [payload] failed_post thread has finished
[2025-07-27 08:45:12] 2025-07-27 12:44:42,481 | INFO     | [job] control thread has finished
[2025-07-27 08:45:12] 2025-07-27 12:44:42,998 | INFO     | [job] validate thread has finished
[2025-07-27 08:45:12] 2025-07-27 12:44:43,073 | INFO     | [payload] validate_post thread has finished
[2025-07-27 08:45:12] 2025-07-27 12:44:43,371 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 08:45:12] 2025-07-27 12:44:43,513 | INFO     | [data] copytool_out thread has finished
[2025-07-27 08:45:12] 2025-07-27 12:44:44,376 | INFO     | [job] queue monitor thread has finished
[2025-07-27 08:45:12] 2025-07-27 12:44:45,585 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 08:45:12] 2025-07-27 12:44:51,276 | INFO     | job.realtimelogging is not enabled
[2025-07-27 08:45:12] 2025-07-27 12:44:52,281 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 08:45:12] 2025-07-27 12:44:53,337 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140548658825024)>', '<ExcThread(monitor, started 140547897419520)>']
[2025-07-27 08:45:12] 2025-07-27 12:44:58,362 | INFO     | all workflow threads have been joined
[2025-07-27 08:45:12] 2025-07-27 12:44:58,362 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 08:45:12] 2025-07-27 12:44:58,363 | INFO     | traces error code: 0
[2025-07-27 08:45:12] 2025-07-27 12:44:58,363 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 08:45:12] 2025-07-27 12:45:11,739 | INFO     | PID=988581 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 08:45:12] 2025-07-27 12:45:11,740 | INFO     | .. there are 10 such processes running
[2025-07-27 08:45:12] 2025-07-27 12:45:11,740 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 08:45:12] 2025-07-27 12:45:11,740 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 08:45:12] 2025-07-27 12:45:11,741 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 08:45:12] 2025-07-27 12:45:11,741 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 08:45:12] 2025-07-27 12:45:11,741 | INFO     | [monitor] control thread has ended
[2025-07-27 08:45:12] 2025-07-27 12:45:11,916 [wrapper] ==== pilot stdout END ====
[2025-07-27 08:45:12] 2025-07-27 12:45:11,919 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 08:45:12] 2025-07-27 12:45:11,922 [wrapper] pilotpid: 988581
[2025-07-27 08:45:12] 2025-07-27 12:45:11,924 [wrapper] Pilot exit status: 0
[2025-07-27 08:45:12] 2025-07-27 12:45:11,937 [wrapper] pandaids: 6746016625
[2025-07-27 08:45:12] 2025-07-27 12:45:11,999 [wrapper] cleanup supervisor_pilot 1324180 988582
[2025-07-27 08:45:12] 2025-07-27 12:45:12,002 [wrapper] Test setup, not cleaning
[2025-07-27 08:45:12] 2025-07-27 12:45:12,006 [wrapper] apfmon messages muted
[2025-07-27 08:45:12] 2025-07-27 12:45:12,010 [wrapper] ==== wrapper stdout END ====
[2025-07-27 08:45:12] 2025-07-27 12:45:12,013 [wrapper] ==== wrapper stderr END ====
[2025-07-27 08:45:12]  *** Error codes and diagnostics ***
[2025-07-27 08:45:12]     "exeErrorCode": 0,
[2025-07-27 08:45:12]     "exeErrorDiag": "",
[2025-07-27 08:45:12]     "pilotErrorCode": 0,
[2025-07-27 08:45:12]     "pilotErrorDiag": "",
[2025-07-27 08:45:12]  *** Listing of results directory ***
[2025-07-27 08:45:12] total 414180
[2025-07-27 08:45:12] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 00:20 pilot3.tar.gz
[2025-07-27 08:45:12] -rwx------. 1 boincer umatlas     36292 Jul 27 00:34 runpilot2-wrapper.sh
[2025-07-27 08:45:12] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 00:34 queuedata.json
[2025-07-27 08:45:12] -rw-r--r--. 1 boincer umatlas       100 Jul 27 07:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 08:45:12] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 07:12 run_atlas
[2025-07-27 08:45:12] -rw-r--r--. 1 boincer umatlas       105 Jul 27 07:12 job.xml
[2025-07-27 08:45:12] -rw-r--r--. 2 boincer umatlas 238139304 Jul 27 07:12 EVNT.45759762._000001.pool.root.1
[2025-07-27 08:45:12] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 07:12 start_atlas.sh
[2025-07-27 08:45:12] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 07:12 shared
[2025-07-27 08:45:12] -rw-r--r--. 2 boincer umatlas    542871 Jul 27 07:12 input.tar.gz
[2025-07-27 08:45:12] -rw-r--r--. 1 boincer umatlas         0 Jul 27 07:12 boinc_lockfile
[2025-07-27 08:45:12] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 07:12 pandaJob.out
[2025-07-27 08:45:12] -rw-------. 1 boincer umatlas    980117 Jul 27 07:12 agis_schedconf.cvmfs.json
[2025-07-27 08:45:12] -rw-------. 1 boincer umatlas   1593052 Jul 27 07:12 agis_ddmendpoints.agis.ALL.json
[2025-07-27 08:45:12] drwx------. 4 boincer umatlas      4096 Jul 27 07:12 pilot3
[2025-07-27 08:45:12] -rw-r--r--. 1 boincer umatlas      6842 Jul 27 08:39 init_data.xml
[2025-07-27 08:45:12] -rw-------. 1 boincer umatlas 180325994 Jul 27 08:43 HITS.45759764._000004.pool.root.1
[2025-07-27 08:45:12] -rw-r--r--. 1 boincer umatlas       530 Jul 27 08:44 boinc_task_state.xml
[2025-07-27 08:45:12] -rw-------. 1 boincer umatlas        95 Jul 27 08:44 pilot_heartbeat.json
[2025-07-27 08:45:12] -rw-------. 1 boincer umatlas      1038 Jul 27 08:44 memory_monitor_summary.json
[2025-07-27 08:45:12] -rw-------. 1 boincer umatlas    362803 Jul 27 08:44 log.45759764._000004.job.log.tgz.1
[2025-07-27 08:45:12] -rw-------. 1 boincer umatlas      7807 Jul 27 08:44 heartbeat.json
[2025-07-27 08:45:12] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 08:44 boinc_mmap_file
[2025-07-27 08:45:12] -rw-r--r--. 1 boincer umatlas        27 Jul 27 08:44 wrapper_checkpoint.txt
[2025-07-27 08:45:12] -rw-------. 1 boincer umatlas       822 Jul 27 08:45 pilotlog.txt
[2025-07-27 08:45:12] -rw-------. 1 boincer umatlas    525652 Jul 27 08:45 log.45759764._000004.job.log.1
[2025-07-27 08:45:12] -rw-------. 1 boincer umatlas       357 Jul 27 08:45 output.list
[2025-07-27 08:45:12] -rw-r--r--. 1 boincer umatlas       620 Jul 27 08:45 runtime_log
[2025-07-27 08:45:12] -rw-------. 1 boincer umatlas    911360 Jul 27 08:45 result.tar.gz
[2025-07-27 08:45:12] -rw-r--r--. 1 boincer umatlas      8667 Jul 27 08:45 runtime_log.err
[2025-07-27 08:45:12] -rw-------. 1 boincer umatlas       655 Jul 27 08:45 IYbNDmvG8z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmEDULDmDA2VDn.diag
[2025-07-27 08:45:12] -rw-r--r--. 1 boincer umatlas     21927 Jul 27 08:45 stderr.txt
[2025-07-27 08:45:12] HITS file was successfully produced:
[2025-07-27 08:45:12] -rw-------. 1 boincer umatlas 180325994 Jul 27 08:43 shared/HITS.pool.root.1
[2025-07-27 08:45:12]  *** Contents of shared directory: ***
[2025-07-27 08:45:12] total 410104
[2025-07-27 08:45:12] -rw-r--r--. 2 boincer umatlas 238139304 Jul 27 07:12 ATLAS.root_0
[2025-07-27 08:45:12] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 07:12 start_atlas.sh
[2025-07-27 08:45:12] -rw-r--r--. 2 boincer umatlas    542871 Jul 27 07:12 input.tar.gz
[2025-07-27 08:45:12] -rw-------. 1 boincer umatlas 180325994 Jul 27 08:43 HITS.pool.root.1
[2025-07-27 08:45:12] -rw-------. 1 boincer umatlas    911360 Jul 27 08:45 result.tar.gz
08:45:13 (985001): run_atlas exited; CPU time 58168.527670
08:45:13 (985001): called boinc_finish(0)

</stderr_txt>
]]>

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