Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:37:40 (2302972): wrapper (7.7.26015): starting
00:37:40 (2302972): wrapper: running run_atlas (--nthreads 4)
[2025-07-28 00:37:40] Arguments: --nthreads 4
[2025-07-28 00:37:40] Threads: 4
[2025-07-28 00:37:40] Checking for CVMFS
[2025-07-28 00:37:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 00:37:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 00:37:40] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 00:37:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 00:37:40] 2.9.2.0 844761 4704 93364 148827 0 57 36427667 36864000 0 130560 0 3834782 99.991 165906 2707 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-07-28 00:37:40] CVMFS is ok
[2025-07-28 00:37:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 00:37:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 00:37:40] Further information can be found at the LHC@home message board.
[2025-07-28 00:37:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 00:37:40] Checking for apptainer binary...
[2025-07-28 00:37:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 00:37:40] Running /usr/bin/apptainer --version
[2025-07-28 00:37:41] apptainer version 1.4.1-1.1
[2025-07-28 00:37:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 00:37:41] thA325
[2025-07-28 00:37:41] apptainer works
[2025-07-28 00:37:41] Set ATHENA_PROC_NUMBER=4
[2025-07-28 00:37:41] Set ATHENA_CORE_NUMBER=4
[2025-07-28 00:37:41] Starting ATLAS job with PandaID=6745941079
[2025-07-28 00:37:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 02:06:56]  *** The last 200 lines of the pilot log: ***
[2025-07-28 02:06:56]  replicas=None
[2025-07-28 02:06:56]  scope=mc23_13p6TeV
[2025-07-28 02:06:56]  status=None
[2025-07-28 02:06:56]  status_code=0
[2025-07-28 02:06:56]  storage_token=
[2025-07-28 02:06:56]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6745941079/log.45759799._000124.job.log.tgz.1
[2025-07-28 02:06:56]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/be/88/log.45759799._000124.job.log.tgz.1
[2025-07-28 02:06:56]  workdir=None
[2025-07-28 02:06:56] ]
[2025-07-28 02:06:56] 2025-07-28 00:06:12,939 | INFO     | transferring file log.45759799._000124.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6745941079/log.45759799._000124.job.log.tgz.1 to /local/data/boinc/
[2025-07-28 02:06:56] 2025-07-28 00:06:12,939 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6745941079/log.45759799._000124.job.log.tgz.1 /local/data/boinc/slots/0/log.45759799._0001
[2025-07-28 02:06:56] 2025-07-28 00:06:12,955 | INFO     | adding to output.list: log.45759799._000124.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/be/88/log.45759799._000124.job.log.tg
[2025-07-28 02:06:56] 2025-07-28 00:06:12,956 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 02:06:56] 2025-07-28 00:06:12,956 | INFO     | summary of transferred files:
[2025-07-28 02:06:56] 2025-07-28 00:06:12,956 | INFO     |  -- lfn=log.45759799._000124.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 02:06:56] 2025-07-28 00:06:12,956 | INFO     | stage-out finished correctly
[2025-07-28 02:06:56] 2025-07-28 00:06:14,778 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 02:06:56] 2025-07-28 00:06:15,469 | WARNING  | process 2313309 can no longer be monitored (due to stat problems) - aborting
[2025-07-28 02:06:56] 2025-07-28 00:06:15,469 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6745941079/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 02:06:56] 2025-07-28 00:06:15,508 | INFO     | number of running child processes to parent process 2313309: 1
[2025-07-28 02:06:56] 2025-07-28 00:06:15,508 | INFO     | maximum number of monitored processes: 6
[2025-07-28 02:06:56] 2025-07-28 00:06:15,721 | INFO     | PID=2306681 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 02:06:56] 2025-07-28 00:06:16,722 | INFO     | 5309s have passed since pilot start - server update state is 'RUNNING'
[2025-07-28 02:06:56] 2025-07-28 00:06:17,635 | INFO     | job 6745941079 has state=finished
[2025-07-28 02:06:56] 2025-07-28 00:06:17,636 | INFO     | preparing for final server update for job 6745941079 in state='finished'
[2025-07-28 02:06:56] 2025-07-28 00:06:18,011 | INFO     | monitor loop #409: job 0:6745941079 is in state 'finished'
[2025-07-28 02:06:56] 2025-07-28 00:06:18,011 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 02:06:56] 2025-07-28 00:06:18,269 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-28 02:06:56] 2025-07-28 00:06:18,270 | INFO     | this job has now completed (state=finished)
[2025-07-28 02:06:56] 2025-07-28 00:06:18,270 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 02:06:56] 2025-07-28 00:06:18,270 | INFO     | log transfer has been attempted: DONE
[2025-07-28 02:06:56] 2025-07-28 00:06:18,270 | INFO     | job 6745941079 has finished - writing final server update
[2025-07-28 02:06:56] 2025-07-28 00:06:18,270 | INFO     | total number of processed events: 400 (read)
[2025-07-28 02:06:56] 2025-07-28 00:06:18,271 | INFO     | executing command: lscpu
[2025-07-28 02:06:56] 2025-07-28 00:06:18,291 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 02:06:56] 2025-07-28 00:06:20,516 | INFO     | monitor loop #410: job 0:6745941079 is in state 'finished'
[2025-07-28 02:06:56] 2025-07-28 00:06:20,516 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 02:06:56] 2025-07-28 00:06:22,718 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-28 02:06:56] 2025-07-28 00:06:22,720 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3243.3804374999995
[2025-07-28 02:06:56] 2025-07-28 00:06:22,721 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6745941079/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 02:06:56] 2025-07-28 00:06:22,721 | INFO     | extracted standard info from prmon json
[2025-07-28 02:06:56] 2025-07-28 00:06:22,721 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 02:06:56] 2025-07-28 00:06:22,721 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 02:06:56] 2025-07-28 00:06:22,721 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 02:06:56] 2025-07-28 00:06:22,721 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 02:06:56] 2025-07-28 00:06:22,722 | INFO     | fitting pss+swap vs Time
[2025-07-28 02:06:56] 2025-07-28 00:06:22,722 | INFO     | sum of square deviations: 158737860.0
[2025-07-28 02:06:56] 2025-07-28 00:06:22,722 | INFO     | sum of deviations: -10514232121.0
[2025-07-28 02:06:56] 2025-07-28 00:06:22,723 | INFO     | mean x: 1753658605.5
[2025-07-28 02:06:56] 2025-07-28 00:06:22,723 | INFO     | mean y: 2488005.975
[2025-07-28 02:06:56] 2025-07-28 00:06:22,723 | INFO     | -- intersect: 116158606270.4909
[2025-07-28 02:06:56] 2025-07-28 00:06:22,723 | INFO     | intersect: 116158606270.4909
[2025-07-28 02:06:56] 2025-07-28 00:06:22,723 | INFO     | chi2: 0.0560423476775307
[2025-07-28 02:06:56] 2025-07-28 00:06:22,723 | INFO     | -- intersect: 116158606270.4909
[2025-07-28 02:06:56] 2025-07-28 00:06:22,723 | INFO     | current memory leak: -66.24 B/s (using 80 data points, chi2=0.06)
[2025-07-28 02:06:56] 2025-07-28 00:06:22,723 | INFO     | could have reported an average CPU frequency of 3784 MHz (6 samples)
[2025-07-28 02:06:56] 2025-07-28 00:06:22,723 | INFO     | ..............................
[2025-07-28 02:06:56] 2025-07-28 00:06:22,723 | INFO     | . Timing measurements:
[2025-07-28 02:06:56] 2025-07-28 00:06:22,723 | INFO     | . get job = 0 s
[2025-07-28 02:06:56] 2025-07-28 00:06:22,723 | INFO     | . initial setup = 1 s
[2025-07-28 02:06:56] 2025-07-28 00:06:22,723 | INFO     | . payload setup = 4 s
[2025-07-28 02:06:56] 2025-07-28 00:06:22,723 | INFO     | . stage-in = 0 s
[2025-07-28 02:06:56] 2025-07-28 00:06:22,723 | INFO     | . payload execution = 5282 s
[2025-07-28 02:06:56] 2025-07-28 00:06:22,723 | INFO     | . stage-out = 0 s
[2025-07-28 02:06:56] 2025-07-28 00:06:22,723 | INFO     | . log creation = 0 s
[2025-07-28 02:06:56] 2025-07-28 00:06:22,723 | INFO     | ..............................
[2025-07-28 02:06:56] 2025-07-28 00:06:23,196 | INFO     | 
[2025-07-28 02:06:56] 2025-07-28 00:06:23,196 | INFO     | job summary report
[2025-07-28 02:06:56] 2025-07-28 00:06:23,196 | INFO     | --------------------------------------------------
[2025-07-28 02:06:56] 2025-07-28 00:06:23,196 | INFO     | PanDA job id: 6745941079
[2025-07-28 02:06:56] 2025-07-28 00:06:23,196 | INFO     | task id: 45759799
[2025-07-28 02:06:56] 2025-07-28 00:06:23,196 | INFO     | errors: (none)
[2025-07-28 02:06:56] 2025-07-28 00:06:23,196 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 02:06:56] 2025-07-28 00:06:23,196 | INFO     | pilot state: finished 
[2025-07-28 02:06:56] 2025-07-28 00:06:23,196 | INFO     | transexitcode: 0
[2025-07-28 02:06:56] 2025-07-28 00:06:23,197 | INFO     | exeerrorcode: 0
[2025-07-28 02:06:56] 2025-07-28 00:06:23,197 | INFO     | exeerrordiag: 
[2025-07-28 02:06:56] 2025-07-28 00:06:23,197 | INFO     | exitcode: 0
[2025-07-28 02:06:56] 2025-07-28 00:06:23,197 | INFO     | exitmsg: OK
[2025-07-28 02:06:56] 2025-07-28 00:06:23,197 | INFO     | cpuconsumptiontime: 20242 s
[2025-07-28 02:06:56] 2025-07-28 00:06:23,197 | INFO     | nevents: 400
[2025-07-28 02:06:56] 2025-07-28 00:06:23,197 | INFO     | neventsw: 0
[2025-07-28 02:06:56] 2025-07-28 00:06:23,197 | INFO     | pid: 2313309
[2025-07-28 02:06:56] 2025-07-28 00:06:23,197 | INFO     | pgrp: 2313309
[2025-07-28 02:06:56] 2025-07-28 00:06:23,197 | INFO     | corecount: 4
[2025-07-28 02:06:56] 2025-07-28 00:06:23,197 | INFO     | event service: False
[2025-07-28 02:06:56] 2025-07-28 00:06:23,197 | INFO     | sizes: {0: 2397476, 3: 2397738, 11: 2397766, 5290: 2433414, 5292: 2433414, 5300: 2433608}
[2025-07-28 02:06:56] 2025-07-28 00:06:23,197 | INFO     | --------------------------------------------------
[2025-07-28 02:06:56] 2025-07-28 00:06:23,197 | INFO     | 
[2025-07-28 02:06:56] 2025-07-28 00:06:23,197 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-07-28 02:06:56] 2025-07-28 00:06:23,219 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 02:06:56] 2025-07-28 00:06:23,219 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 02:06:56] 2025-07-28 00:06:23,219 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 02:06:56] 2025-07-28 00:06:23,219 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 02:06:56] 2025-07-28 00:06:23,219 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 02:06:56] 2025-07-28 00:06:23,219 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 02:06:56] 2025-07-28 00:06:23,219 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 02:06:56] 2025-07-28 00:06:23,219 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 02:06:56] 2025-07-28 00:06:23,219 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 02:06:56] 2025-07-28 00:06:23,219 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 02:06:56] 2025-07-28 00:06:23,219 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 02:06:56] 2025-07-28 00:06:23,219 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 02:06:56] 2025-07-28 00:06:23,219 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 02:06:56] 2025-07-28 00:06:23,219 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 02:06:56] 2025-07-28 00:06:23,219 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 02:06:56] 2025-07-28 00:06:23,219 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 02:06:56] 2025-07-28 00:06:23,219 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 02:06:56] 2025-07-28 00:06:23,219 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 02:06:56] 2025-07-28 00:06:23,219 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 02:06:56] 2025-07-28 00:06:23,219 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 02:06:56] 2025-07-28 00:06:23,219 | INFO     | job 6745941079 has completed (purged errors)
[2025-07-28 02:06:56] 2025-07-28 00:06:23,219 | INFO     | overall cleanup function is called
[2025-07-28 02:06:56] 2025-07-28 00:06:24,226 | INFO     | --- collectZombieJob: --- 10, [2313309]
[2025-07-28 02:06:56] 2025-07-28 00:06:24,226 | INFO     | zombie collector waiting for pid 2313309
[2025-07-28 02:06:56] 2025-07-28 00:06:24,226 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 02:06:56] 2025-07-28 00:06:24,226 | INFO     | collected zombie processes
[2025-07-28 02:06:56] 2025-07-28 00:06:24,226 | INFO     | will attempt to kill all subprocesses of pid=2313309
[2025-07-28 02:06:56] 2025-07-28 00:06:24,271 | INFO     | process IDs to be killed: [2313309] (in reverse order)
[2025-07-28 02:06:56] 2025-07-28 00:06:24,302 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 02:06:56] 2025-07-28 00:06:24,302 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 02:06:56] 2025-07-28 00:06:24,304 | INFO     | did not find any defunct processes belonging to 2313309
[2025-07-28 02:06:56] 2025-07-28 00:06:24,305 | INFO     | did not find any defunct processes belonging to 2313309
[2025-07-28 02:06:56] 2025-07-28 00:06:24,305 | INFO     | ready for new job
[2025-07-28 02:06:56] 2025-07-28 00:06:24,305 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 02:06:56] 2025-07-28 00:06:24,306 | INFO     | ***************************************
[2025-07-28 02:06:56] 2025-07-28 00:06:24,306 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 02:06:56] 2025-07-28 00:06:24,306 | INFO     | ***************************************
[2025-07-28 02:06:56] 2025-07-28 00:06:24,306 | INFO     | 
[2025-07-28 02:06:56] 2025-07-28 00:06:24,307 | INFO     | architecture information:
[2025-07-28 02:06:56] 2025-07-28 00:06:24,307 | INFO     | executing command: cat /etc/os-release
[2025-07-28 02:06:56] 2025-07-28 00:06:24,319 | INFO     | cat /etc/os-release:
[2025-07-28 02:06:56] NAME="CentOS Linux"
[2025-07-28 02:06:56] VERSION="7 (Core)"
[2025-07-28 02:06:56] ID="centos"
[2025-07-28 02:06:56] ID_LIKE="rhel fedora"
[2025-07-28 02:06:56] VERSION_ID="7"
[2025-07-28 02:06:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 02:06:56] ANSI_COLOR="0;31"
[2025-07-28 02:06:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 02:06:56] HOME_URL="https://www.centos.org/"
[2025-07-28 02:06:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 02:06:56] 
[2025-07-28 02:06:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 02:06:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 02:06:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 02:06:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 02:06:56] 
[2025-07-28 02:06:56] 2025-07-28 00:06:24,319 | INFO     | ***************************************
[2025-07-28 02:06:56] 2025-07-28 00:06:24,823 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-07-28 02:06:56] 2025-07-28 00:06:24,840 | INFO     | sufficient remaining disk space (218163576832 B)
[2025-07-28 02:06:56] 2025-07-28 00:06:24,840 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 02:06:56] 2025-07-28 00:06:24,840 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 02:06:56] 2025-07-28 00:06:24,840 | INFO     | update_server=False
[2025-07-28 02:06:56] 2025-07-28 00:06:24,840 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 02:06:56] 2025-07-28 00:06:24,840 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 02:06:56] 2025-07-28 00:06:24,840 | INFO     | aborting loop
[2025-07-28 02:06:56] 2025-07-28 00:06:25,222 | INFO     | all data control threads have been joined
[2025-07-28 02:06:56] 2025-07-28 00:06:25,331 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 02:06:56] 2025-07-28 00:06:25,372 | INFO     | all payload control threads have been joined
[2025-07-28 02:06:56] 2025-07-28 00:06:25,555 | INFO     | all job control threads have been joined
[2025-07-28 02:06:56] 2025-07-28 00:06:25,846 | INFO     | [job] job monitor thread has finished
[2025-07-28 02:06:56] 2025-07-28 00:06:25,846 | INFO     | [job] retrieve thread has finished
[2025-07-28 02:06:56] 2025-07-28 00:06:25,879 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 02:06:56] 2025-07-28 00:06:25,946 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 02:06:56] 2025-07-28 00:06:26,011 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 02:06:56] 2025-07-28 00:06:26,139 | INFO     | [data] copytool_in thread has finished
[2025-07-28 02:06:56] 2025-07-28 00:06:26,228 | INFO     | [data] control thread has finished
[2025-07-28 02:06:56] 2025-07-28 00:06:26,378 | INFO     | [payload] control thread has finished
[2025-07-28 02:06:56] 2025-07-28 00:06:26,449 | INFO     | [payload] validate_post thread has finished
[2025-07-28 02:06:56] 2025-07-28 00:06:26,523 | INFO     | [payload] failed_post thread has finished
[2025-07-28 02:06:56] 2025-07-28 00:06:26,561 | INFO     | [job] control thread has finished
[2025-07-28 02:06:56] 2025-07-28 00:06:27,109 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 02:06:56] 2025-07-28 00:06:27,250 | INFO     | [job] validate thread has finished
[2025-07-28 02:06:56] 2025-07-28 00:06:27,775 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 02:06:56] 2025-07-28 00:06:28,018 | INFO     | [data] copytool_out thread has finished
[2025-07-28 02:06:56] 2025-07-28 00:06:28,781 | INFO     | [job] queue monitor thread has finished
[2025-07-28 02:06:56] 2025-07-28 00:06:29,338 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 02:06:56] 2025-07-28 00:06:35,677 | INFO     | job.realtimelogging is not enabled
[2025-07-28 02:06:56] 2025-07-28 00:06:36,683 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 02:06:56] 2025-07-28 00:06:37,436 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140503653218112)>', '<ExcThread(monitor, started 140502875764480)>']
[2025-07-28 02:06:56] 2025-07-28 00:06:42,462 | INFO     | all workflow threads have been joined
[2025-07-28 02:06:56] 2025-07-28 00:06:42,462 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 02:06:56] 2025-07-28 00:06:42,462 | INFO     | traces error code: 0
[2025-07-28 02:06:56] 2025-07-28 00:06:42,462 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 02:06:56] 2025-07-28 00:06:55,876 | INFO     | PID=2306681 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 02:06:56] 2025-07-28 00:06:55,876 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 02:06:56] 2025-07-28 00:06:55,876 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 02:06:56] 2025-07-28 00:06:55,876 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 02:06:56] 2025-07-28 00:06:55,876 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 02:06:56] 2025-07-28 00:06:55,876 | INFO     | [monitor] control thread has ended
[2025-07-28 02:06:56] 2025-07-28 00:06:55,941 [wrapper] ==== pilot stdout END ====
[2025-07-28 02:06:56] 2025-07-28 00:06:55,945 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 02:06:56] 2025-07-28 00:06:55,948 [wrapper] pilotpid: 2306681
[2025-07-28 02:06:56] 2025-07-28 00:06:55,952 [wrapper] Pilot exit status: 0
[2025-07-28 02:06:56] 2025-07-28 00:06:55,963 [wrapper] pandaids: 6745941079
[2025-07-28 02:06:56] 2025-07-28 00:06:55,983 [wrapper] cleanup supervisor_pilot 2325460 2306682
[2025-07-28 02:06:56] 2025-07-28 00:06:55,987 [wrapper] Test setup, not cleaning
[2025-07-28 02:06:56] 2025-07-28 00:06:55,990 [wrapper] apfmon messages muted
[2025-07-28 02:06:56] 2025-07-28 00:06:55,993 [wrapper] ==== wrapper stdout END ====
[2025-07-28 02:06:56] 2025-07-28 00:06:55,997 [wrapper] ==== wrapper stderr END ====
[2025-07-28 02:06:56]  *** Error codes and diagnostics ***
[2025-07-28 02:06:56]     "exeErrorCode": 0,
[2025-07-28 02:06:56]     "exeErrorDiag": "",
[2025-07-28 02:06:56]     "pilotErrorCode": 0,
[2025-07-28 02:06:56]     "pilotErrorDiag": "",
[2025-07-28 02:06:56]  *** Listing of results directory ***
[2025-07-28 02:06:56] total 407200
[2025-07-28 02:06:56] -rw-r--r-- 1 boinc boinc    530466 Jul 27 03:40 pilot3.tar.gz
[2025-07-28 02:06:56] -rwx------ 1 boinc boinc     36292 Jul 27 03:46 runpilot2-wrapper.sh
[2025-07-28 02:06:56] -rw-r--r-- 1 boinc boinc      5112 Jul 27 03:46 queuedata.json
[2025-07-28 02:06:56] -rw-r--r-- 1 boinc boinc       100 Jul 28 00:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 02:06:56] -rwxr-xr-x 1 boinc boinc      7986 Jul 28 00:37 run_atlas
[2025-07-28 02:06:56] -rw-r--r-- 1 boinc boinc       105 Jul 28 00:37 job.xml
[2025-07-28 02:06:56] -rw-r--r-- 2 boinc boinc 240496695 Jul 28 00:37 EVNT.45759797._000005.pool.root.1
[2025-07-28 02:06:56] -rw-r--r-- 2 boinc boinc    542882 Jul 28 00:37 input.tar.gz
[2025-07-28 02:06:56] -rw-r--r-- 2 boinc boinc     15095 Jul 28 00:37 start_atlas.sh
[2025-07-28 02:06:56] drwxrwx--x 2 boinc boinc      4096 Jul 28 00:37 shared
[2025-07-28 02:06:56] -rw-r--r-- 1 boinc boinc         0 Jul 28 00:37 boinc_setup_complete
[2025-07-28 02:06:56] -rw-r--r-- 1 boinc boinc      6372 Jul 28 00:37 init_data.xml
[2025-07-28 02:06:56] -rw-r--r-- 1 boinc boinc         0 Jul 28 00:37 boinc_lockfile
[2025-07-28 02:06:56] -rw-r--r-- 1 boinc boinc      2564 Jul 28 00:37 pandaJob.out
[2025-07-28 02:06:56] -rw------- 1 boinc boinc    980109 Jul 28 00:37 agis_schedconf.cvmfs.json
[2025-07-28 02:06:56] -rw------- 1 boinc boinc   1593052 Jul 28 00:37 agis_ddmendpoints.agis.ALL.json
[2025-07-28 02:06:56] drwx------ 4 boinc boinc      4096 Jul 28 00:37 pilot3
[2025-07-28 02:06:56] -rw------- 1 boinc boinc 171036934 Jul 28 02:05 HITS.45759799._000124.pool.root.1
[2025-07-28 02:06:56] -rw-r--r-- 1 boinc boinc       529 Jul 28 02:05 boinc_task_state.xml
[2025-07-28 02:06:56] -rw------- 1 boinc boinc      1022 Jul 28 02:06 memory_monitor_summary.json
[2025-07-28 02:06:56] -rw------- 1 boinc boinc    262154 Jul 28 02:06 log.45759799._000124.job.log.tgz.1
[2025-07-28 02:06:56] -rw------- 1 boinc boinc        95 Jul 28 02:06 pilot_heartbeat.json
[2025-07-28 02:06:56] -rw------- 1 boinc boinc      7769 Jul 28 02:06 heartbeat.json
[2025-07-28 02:06:56] -rw-r--r-- 1 boinc boinc      8192 Jul 28 02:06 boinc_mmap_file
[2025-07-28 02:06:56] -rw-r--r-- 1 boinc boinc        27 Jul 28 02:06 wrapper_checkpoint.txt
[2025-07-28 02:06:56] -rw------- 1 boinc boinc       747 Jul 28 02:06 pilotlog.txt
[2025-07-28 02:06:56] -rw------- 1 boinc boinc    513430 Jul 28 02:06 log.45759799._000124.job.log.1
[2025-07-28 02:06:56] -rw------- 1 boinc boinc       357 Jul 28 02:06 output.list
[2025-07-28 02:06:56] -rw-r--r-- 1 boinc boinc       620 Jul 28 02:06 runtime_log
[2025-07-28 02:06:56] -rw------- 1 boinc boinc    798720 Jul 28 02:06 result.tar.gz
[2025-07-28 02:06:56] -rw------- 1 boinc boinc       658 Jul 28 02:06 zUiMDm2d5z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmhpTLDmFHRXim.diag
[2025-07-28 02:06:56] -rw-r--r-- 1 boinc boinc      8734 Jul 28 02:06 runtime_log.err
[2025-07-28 02:06:56] -rw-r--r-- 1 boinc boinc     21967 Jul 28 02:06 stderr.txt
[2025-07-28 02:06:56] HITS file was successfully produced:
[2025-07-28 02:06:56] -rw------- 1 boinc boinc 171036934 Jul 28 02:05 shared/HITS.pool.root.1
[2025-07-28 02:06:56]  *** Contents of shared directory: ***
[2025-07-28 02:06:56] total 403232
[2025-07-28 02:06:56] -rw-r--r-- 2 boinc boinc 240496695 Jul 28 00:37 ATLAS.root_0
[2025-07-28 02:06:56] -rw-r--r-- 2 boinc boinc    542882 Jul 28 00:37 input.tar.gz
[2025-07-28 02:06:56] -rw-r--r-- 2 boinc boinc     15095 Jul 28 00:37 start_atlas.sh
[2025-07-28 02:06:56] -rw------- 1 boinc boinc 171036934 Jul 28 02:05 HITS.pool.root.1
[2025-07-28 02:06:56] -rw------- 1 boinc boinc    798720 Jul 28 02:06 result.tar.gz
02:06:57 (2302972): run_atlas exited; CPU time 20261.214083
02:06:57 (2302972): called boinc_finish(0)

</stderr_txt>
]]>

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