Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-27 11:35:35 (10468): Detected: vboxwrapper 26206
2025-07-27 11:35:35 (10468): Detected: BOINC client v8.0.2
2025-07-27 11:35:36 (10468): Detected: VirtualBox VboxManage Interface (Version: 7.0.20)
2025-07-27 11:35:36 (10468): Successfully copied 'init_data.xml' to the shared directory.
2025-07-27 11:35:36 (10468): Create VM. (boinc_c988d2406cb03566, slot#2)
2025-07-27 11:35:37 (10468): Setting Memory Size for VM. (4400MB)
2025-07-27 11:35:37 (10468): Setting CPU Count for VM. (4)
2025-07-27 11:35:38 (10468): Setting Chipset Options for VM.
2025-07-27 11:35:38 (10468): Setting Graphics Controller Options for VM.
2025-07-27 11:35:38 (10468): Setting Boot Options for VM.
2025-07-27 11:35:38 (10468): Setting Network Configuration for NAT.
2025-07-27 11:35:39 (10468): Enabling VM Network Access.
2025-07-27 11:35:39 (10468): Disabling USB Support for VM.
2025-07-27 11:35:39 (10468): Disabling COM Port Support for VM.
2025-07-27 11:35:39 (10468): Disabling LPT Port Support for VM.
2025-07-27 11:35:40 (10468): Disabling Audio Support for VM.
2025-07-27 11:35:40 (10468): Disabling Clipboard Support for VM.
2025-07-27 11:35:40 (10468): Disabling Drag and Drop Support for VM.
2025-07-27 11:35:40 (10468): Adding storage controller(s) to VM.
2025-07-27 11:35:41 (10468): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-27 11:35:43 (10468): Adding VirtualBox Guest Additions to VM.
2025-07-27 11:35:44 (10468): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-27 11:35:44 (10468): forwarding host port 64106 to guest port 80
2025-07-27 11:35:44 (10468): Enabling remote desktop for VM.
2025-07-27 11:35:44 (10468): Required extension pack not installed, remote desktop not enabled.
2025-07-27 11:35:44 (10468): Enabling shared directory for VM.
2025-07-27 11:35:45 (10468): Starting VM using VBoxManage interface. (boinc_c988d2406cb03566, slot#2)
2025-07-27 11:35:53 (10468): Successfully started VM. (PID = '9900')
2025-07-27 11:35:53 (10468): Reporting VM Process ID to BOINC.
2025-07-27 11:35:53 (10468): Guest Log: BIOS: VirtualBox 7.0.20
2025-07-27 11:35:53 (10468): Guest Log: CPUID EDX: 0x178bfbff
2025-07-27 11:35:53 (10468): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-07-27 11:35:53 (10468): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-27 11:35:53 (10468): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-27 11:35:53 (10468): Detected: Web Application Enabled (http://localhost:64106)
2025-07-27 11:35:53 (10468): Preference change detected
2025-07-27 11:35:53 (10468): Setting CPU throttle for VM. (80%)
2025-07-27 11:35:53 (10468): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 900 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-27 11:35:55 (10468): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-27 11:35:55 (10468): Guest Log: BIOS: Booting from Hard Disk...
2025-07-27 11:36:23 (10468): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-27 11:36:23 (10468): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-27 11:36:23 (10468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-27 11:36:23 (10468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-27 11:36:23 (10468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-27 11:36:23 (10468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-27 11:36:23 (10468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-27 11:36:23 (10468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-27 11:36:23 (10468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-27 11:36:23 (10468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-27 11:36:23 (10468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-27 11:36:23 (10468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-27 11:36:23 (10468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-27 11:36:23 (10468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-27 11:36:23 (10468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-27 11:36:23 (10468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-27 11:36:23 (10468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-27 11:36:23 (10468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-27 11:36:23 (10468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-27 11:36:23 (10468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-27 11:36:23 (10468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-27 11:36:23 (10468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-27 11:36:23 (10468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-27 11:36:23 (10468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-27 11:36:23 (10468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-27 11:36:23 (10468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-27 11:36:23 (10468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-27 11:36:23 (10468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-27 11:36:23 (10468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-27 11:36:23 (10468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-27 11:36:23 (10468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-27 11:36:23 (10468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-27 11:36:30 (10468): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-27 11:36:30 (10468): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-27 11:36:39 (10468): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-27 11:36:39 (10468): Guest Log: 00:00:00.000239 main     Log opened 2025-07-27T11:36:37.676557000Z
2025-07-27 11:36:39 (10468): Guest Log: 00:00:00.000467 main     OS Product: Linux
2025-07-27 11:36:39 (10468): Guest Log: 00:00:00.000535 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-27 11:36:39 (10468): Guest Log: 00:00:00.000598 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-27 11:36:39 (10468): Guest Log: 00:00:00.000662 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-27 11:36:39 (10468): Guest Log: 00:00:00.000663 main     Process ID: 1271
2025-07-27 11:36:39 (10468): Guest Log: 00:00:00.000664 main     Package type: LINUX_64BITS_GENERIC
2025-07-27 11:36:39 (10468): Guest Log: 00:00:00.002232 main     5.2.32 r132073 started. Verbose level = 0
2025-07-27 11:36:39 (10468): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-27 11:36:39 (10468): Guest Log: [INFO] Mounting shared directory
2025-07-27 11:36:39 (10468): Guest Log: [INFO] Checking for init_data.xml
2025-07-27 11:36:43 (10468): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-27 11:36:43 (10468): Guest Log: [INFO] Detected branch: prod
2025-07-27 11:36:44 (10468): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-27 11:36:44 (10468): Guest Log: Copying input files
2025-07-27 11:36:46 (10468): Guest Log: Copied input files into RunAtlas.
2025-07-27 11:36:46 (10468): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-07-27 11:36:46 (10468): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-07-27 11:36:46 (10468): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-07-27 11:36:46 (10468): Guest Log: Further information can be found at the LHC@home message board.
2025-07-27 11:36:49 (10468): Guest Log: 00:00:10.067028 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 398 388 000ns (GuestNow=1 753 609 009 284 448 000 ns GuestLast=1 753 616 197 682 836 000 ns fSetTimeLastLoop=true )
2025-07-27 11:37:00 (10468): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-27 11:37:01 (10468): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-27 11:37:01 (10468): Guest Log: 2.6.3.0 1547 0 32168 148807 4 1 3117619 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-07-27 11:37:02 (10468): Guest Log: copied the webapp to /var/www
2025-07-27 11:37:02 (10468): Guest Log: ATHENA_PROC_NUMBER=4
2025-07-27 11:37:02 (10468): Guest Log: ATHENA_CORE_NUMBER=4
2025-07-27 11:37:02 (10468): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-27 11:37:02 (10468): Guest Log:  *** Starting ATLAS job. (PandaID=6745948327 taskID=45759912) ***
2025-07-27 13:18:05 (10468): Status Report: Elapsed Time: '6000.222864'
2025-07-27 13:18:05 (10468): Status Report: CPU Time: '17429.125000'
2025-07-27 14:59:57 (10468): Status Report: Elapsed Time: '12001.135706'
2025-07-27 14:59:57 (10468): Status Report: CPU Time: '36173.421875'
2025-07-27 16:41:41 (10468): Status Report: Elapsed Time: '18001.614521'
2025-07-27 16:41:41 (10468): Status Report: CPU Time: '55012.078125'
2025-07-27 18:23:31 (10468): Status Report: Elapsed Time: '24002.047680'
2025-07-27 18:23:31 (10468): Status Report: CPU Time: '72936.359375'
2025-07-27 20:04:28 (10468): Status Report: Elapsed Time: '30002.394289'
2025-07-27 20:04:28 (10468): Status Report: CPU Time: '93172.140625'
2025-07-27 20:54:09 (10468): Guest Log:  *** Job finished ***
2025-07-27 20:54:09 (10468): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-27 20:54:09 (10468): Guest Log: 2025-07-27 18:53:55,611 | INFO     | [data] queue_monitor thread has finished
2025-07-27 20:54:09 (10468): Guest Log: 2025-07-27 18:54:00,206 | INFO     | job.realtimelogging is not enabled
2025-07-27 20:54:09 (10468): Guest Log: 2025-07-27 18:54:01,211 | INFO     | [payload] run_realtimelog thread has finished
2025-07-27 20:54:09 (10468): Guest Log: 2025-07-27 18:54:02,247 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140305790027584)>', '<ExcThread(monitor, started 140304896222976)>']
2025-07-27 20:54:09 (10468): Guest Log: 2025-07-27 18:54:03,171 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-27 20:54:09 (10468): Guest Log: 2025-07-27 18:54:03,171 | INFO     | [monitor] control thread has ended
2025-07-27 20:54:09 (10468): Guest Log: 2025-07-27 18:54:07,250 | INFO     | all workflow threads have been joined
2025-07-27 20:54:09 (10468): Guest Log: 2025-07-27 18:54:07,250 | INFO     | end of generic workflow (traces error code: 0)
2025-07-27 20:54:09 (10468): Guest Log: 2025-07-27 18:54:07,250 | INFO     | traces error code: 0
2025-07-27 20:54:09 (10468): Guest Log: 2025-07-27 18:54:07,251 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-27 20:54:09 (10468): Guest Log: 2025-07-27 18:54:07,389 [wrapper] ==== pilot stdout END ====
2025-07-27 20:54:09 (10468): Guest Log: 2025-07-27 18:54:07,399 [wrapper] ==== wrapper stdout RESUME ====
2025-07-27 20:54:09 (10468): Guest Log: 2025-07-27 18:54:07,410 [wrapper] pilotpid: 5866
2025-07-27 20:54:09 (10468): Guest Log: 2025-07-27 18:54:07,419 [wrapper] Pilot exit status: 0
2025-07-27 20:54:09 (10468): Guest Log: 2025-07-27 18:54:07,604 [wrapper] pandaids: 6745948327
2025-07-27 20:54:09 (10468): Guest Log: 2025-07-27 18:54:07,674 [wrapper] cleanup supervisor_pilot 10015 5867
2025-07-27 20:54:09 (10468): Guest Log: 2025-07-27 18:54:07,686 [wrapper] Test setup, not cleaning
2025-07-27 20:54:09 (10468): Guest Log: 2025-07-27 18:54:07,709 [wrapper] apfmon messages muted
2025-07-27 20:54:09 (10468): Guest Log: 2025-07-27 18:54:07,734 [wrapper] ==== wrapper stdout END ====
2025-07-27 20:54:09 (10468): Guest Log: 2025-07-27 18:54:07,745 [wrapper] ==== wrapper stderr END ====
2025-07-27 20:54:09 (10468): Guest Log:  *** Error codes and diagnostics ***
2025-07-27 20:54:09 (10468): Guest Log:     "exeErrorCode": 0,
2025-07-27 20:54:09 (10468): Guest Log:     "exeErrorDiag": "",
2025-07-27 20:54:09 (10468): Guest Log:     "pilotErrorCode": 0,
2025-07-27 20:54:09 (10468): Guest Log:     "pilotErrorDiag": "",
2025-07-27 20:54:09 (10468): Guest Log:  *** Listing of results directory ***
2025-07-27 20:54:09 (10468): Guest Log: total 174480
2025-07-27 20:54:09 (10468): Guest Log: -rw-r--r--. 1 atlas atlas    530466 Jul 27 01:40 pilot3.tar.gz
2025-07-27 20:54:09 (10468): Guest Log: -rwx------. 1 atlas atlas     36292 Jul 27 01:46 runpilot2-wrapper.sh
2025-07-27 20:54:09 (10468): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Jul 27 01:46 queuedata.json
2025-07-27 20:54:09 (10468): Guest Log: -rwxr-xr-x. 1 atlas atlas      6301 Jul 27 09:36 init_data.xml
2025-07-27 20:54:09 (10468): Guest Log: -rwxr-xr-x. 1 atlas atlas    542868 Jul 27 09:36 input.tar.gz
2025-07-27 20:54:09 (10468): Guest Log: -rwxr-xr-x. 1 atlas atlas     15095 Jul 27 09:36 start_atlas.sh
2025-07-27 20:54:09 (10468): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jul 27 09:36 EVNT.45759910._000002.pool.root.1 -> /data/./ATLAS.root_0
2025-07-27 20:54:09 (10468): Guest Log: -rw-r--r--. 1 atlas atlas      2553 Jul 27 09:37 pandaJob.out
2025-07-27 20:54:09 (10468): Guest Log: -rw-------. 1 atlas atlas    980125 Jul 27 09:37 agis_schedconf.cvmfs.json
2025-07-27 20:54:09 (10468): Guest Log: drwx------. 4 atlas atlas      4096 Jul 27 09:37 pilot3
2025-07-27 20:54:09 (10468): Guest Log: -rw-------. 1 atlas atlas 168693455 Jul 27 18:52 HITS.45759912._000027.pool.root.1
2025-07-27 20:54:09 (10468): Guest Log: -rw-------. 1 atlas atlas      1038 Jul 27 18:53 memory_monitor_summary.json
2025-07-27 20:54:09 (10468): Guest Log: -rw-------. 1 atlas atlas        95 Jul 27 18:53 pilot_heartbeat.json
2025-07-27 20:54:09 (10468): Guest Log: -rw-------. 1 atlas atlas   1593052 Jul 27 18:53 agis_ddmendpoints.agis.ALL.json
2025-07-27 20:54:09 (10468): Guest Log: -rw-------. 1 atlas atlas    466823 Jul 27 18:53 log.45759912._000027.job.log.tgz.1
2025-07-27 20:54:09 (10468): Guest Log: -rw-------. 1 atlas atlas      7824 Jul 27 18:53 heartbeat.json
2025-07-27 20:54:09 (10468): Guest Log: -rw-------. 1 atlas atlas      4798 Jul 27 18:54 pilotlog.txt
2025-07-27 20:54:09 (10468): Guest Log: -rw-------. 1 atlas atlas   2616165 Jul 27 18:54 log.45759912._000027.job.log.1
2025-07-27 20:54:09 (10468): Guest Log: -rw-------. 1 atlas atlas       357 Jul 27 18:54 output.list
2025-07-27 20:54:09 (10468): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jul 27 18:54 runtime_log
2025-07-27 20:54:09 (10468): Guest Log: -rw-------. 1 atlas atlas   3102720 Jul 27 18:54 result.tar.gz
2025-07-27 20:54:09 (10468): Guest Log: -rw-r--r--. 1 atlas atlas      8600 Jul 27 18:54 runtime_log.err
2025-07-27 20:54:09 (10468): Guest Log: -rw-------. 1 atlas atlas       661 Jul 27 18:54 BDnMDm2d5z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlpTLDmW24Ybn.diag
2025-07-27 20:54:09 (10468): Guest Log: Looking for outputfile HITS.45759912._000027.pool.root.1
2025-07-27 20:54:09 (10468): Guest Log: HITS file was successfully produced
2025-07-27 20:54:09 (10468): Guest Log: -rw-------. 1 atlas atlas 168693455 Jul 27 18:52 /home/atlas/RunAtlas/HITS.45759912._000027.pool.root.1
2025-07-27 20:54:10 (10468): Guest Log: Successfully finished the ATLAS job!
2025-07-27 20:54:10 (10468): Guest Log: Copying the results back to the shared directory!
2025-07-27 20:54:10 (10468): Guest Log:  *** Contents of shared directory: ***
2025-07-27 20:54:11 (10468): Guest Log: total 397340
2025-07-27 20:54:11 (10468): Guest Log: -rwxrwxrwx. 1 root root 234506750 Jul 27 09:35 ATLAS.root_0
2025-07-27 20:54:11 (10468): Guest Log: -rwxrwxrwx. 1 root root 168693455 Jul 27 18:54 HITS.pool.root.1
2025-07-27 20:54:11 (10468): Guest Log: -rwxrwxrwx. 1 root root      6301 Jul 27 09:35 init_data.xml
2025-07-27 20:54:11 (10468): Guest Log: -rwxrwxrwx. 1 root root    542868 Jul 27 09:35 input.tar.gz
2025-07-27 20:54:11 (10468): Guest Log: -rwxrwxrwx. 1 root root   3102720 Jul 27 18:54 result.tar.gz
2025-07-27 20:54:11 (10468): Guest Log: -rwxrwxrwx. 1 root root     15095 Jul 27 09:35 start_atlas.sh
2025-07-27 20:54:11 (10468): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-27 20:54:11 (10468): VM Completion File Detected.
2025-07-27 20:54:11 (10468): Powering off VM.
2025-07-27 20:54:12 (10468): Successfully stopped VM.
2025-07-27 20:54:12 (10468): Deregistering VM. (boinc_c988d2406cb03566, slot#2)
2025-07-27 20:54:13 (10468): Removing network bandwidth throttle group from VM.
2025-07-27 20:54:13 (10468): Removing VM from VirtualBox.
20:54:18 (10468): called boinc_finish(0)

</stderr_txt>
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