Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
04:49:30 (1202): wrapper (7.7.26015): starting
04:49:30 (1202): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 04:49:30] Arguments: --nthreads 12
[2025-07-27 04:49:30] Threads: 12
[2025-07-27 04:49:30] Checking for CVMFS
[2025-07-27 04:49:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 04:49:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 04:49:31] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 04:49:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 04:49:31] 2.11.2.0 2979 111797 90708 148805 1 59 15130333 20275201 1 130560 0 38242536 99.972 9605529 10468 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 04:49:31] CVMFS is ok
[2025-07-27 04:49:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 04:49:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 04:49:31] Further information can be found at the LHC@home message board.
[2025-07-27 04:49:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 04:49:31] Checking for apptainer binary...
[2025-07-27 04:49:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 04:49:31] Running /usr/bin/apptainer --version
[2025-07-27 04:49:31] apptainer version 1.3.2-1.el7
[2025-07-27 04:49:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 04:49:32] c-205-21.aglt2.org
[2025-07-27 04:49:32] apptainer works
[2025-07-27 04:49:32] Set ATHENA_PROC_NUMBER=12
[2025-07-27 04:49:32] Set ATHENA_CORE_NUMBER=12
[2025-07-27 04:49:32] Starting ATLAS job with PandaID=6745939007
[2025-07-27 04:49:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 06:25:32]  *** The last 200 lines of the pilot log: ***
[2025-07-27 06:25:32]  is_tar=False
[2025-07-27 06:25:32]  lfn=log.45758392._000060.job.log.tgz.1
[2025-07-27 06:25:32]  mtime=0
[2025-07-27 06:25:32]  protocol_id=None
[2025-07-27 06:25:32]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 06:25:32]  replicas=None
[2025-07-27 06:25:32]  scope=mc23_13p6TeV
[2025-07-27 06:25:32]  status=None
[2025-07-27 06:25:32]  status_code=0
[2025-07-27 06:25:32]  storage_token=
[2025-07-27 06:25:32]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745939007/log.45758392._000060.job.log.tgz.1
[2025-07-27 06:25:32]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/34/0b/log.45758392._000060.job.log.tgz.1
[2025-07-27 06:25:32]  workdir=None
[2025-07-27 06:25:32] ]
[2025-07-27 06:25:32] 2025-07-27 10:24:53,807 | INFO     | transferring file log.45758392._000060.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745939007/log.45758392._000060.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 06:25:32] 2025-07-27 10:24:53,808 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745939007/log.45758392._000060.job.log.tgz.1 /tmp/boinchome/slots/0/log.45758392._000060.job
[2025-07-27 06:25:32] 2025-07-27 10:24:53,829 | INFO     | adding to output.list: log.45758392._000060.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/34/0b/log.45758392._000060.job.log.tg
[2025-07-27 06:25:32] 2025-07-27 10:24:53,830 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 06:25:32] 2025-07-27 10:24:53,830 | INFO     | summary of transferred files:
[2025-07-27 06:25:32] 2025-07-27 10:24:53,830 | INFO     |  -- lfn=log.45758392._000060.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 06:25:32] 2025-07-27 10:24:53,831 | INFO     | stage-out finished correctly
[2025-07-27 06:25:32] 2025-07-27 10:24:53,916 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 06:25:32] 2025-07-27 10:24:54,117 | INFO     | PID=4990 has CPU usage=6.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-07-27 06:25:32] 2025-07-27 10:24:55,119 | INFO     | monitor loop #423: job 0:6745939007 is in state 'finished'
[2025-07-27 06:25:32] 2025-07-27 10:24:55,120 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 06:25:32] 2025-07-27 10:24:56,223 | INFO     | job 6745939007 has state=finished
[2025-07-27 06:25:32] 2025-07-27 10:24:56,223 | INFO     | preparing for final server update for job 6745939007 in state='finished'
[2025-07-27 06:25:32] 2025-07-27 10:24:56,224 | INFO     | this job has now completed (state=finished)
[2025-07-27 06:25:32] 2025-07-27 10:24:56,224 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 06:25:32] 2025-07-27 10:24:56,224 | INFO     | log transfer has been attempted: DONE
[2025-07-27 06:25:32] 2025-07-27 10:24:56,224 | INFO     | job 6745939007 has finished - writing final server update
[2025-07-27 06:25:32] 2025-07-27 10:24:56,225 | INFO     | total number of processed events: 400 (read)
[2025-07-27 06:25:32] 2025-07-27 10:24:56,225 | INFO     | executing command: lscpu
[2025-07-27 06:25:32] 2025-07-27 10:24:56,253 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 06:25:32] 2025-07-27 10:24:57,623 | INFO     | monitor loop #424: job 0:6745939007 is in state 'finished'
[2025-07-27 06:25:32] 2025-07-27 10:24:57,623 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 06:25:32] 2025-07-27 10:25:00,125 | INFO     | monitor loop #425: job 0:6745939007 is in state 'finished'
[2025-07-27 06:25:32] 2025-07-27 10:25:00,126 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 06:25:32] 2025-07-27 10:25:00,878 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-27 06:25:32] 2025-07-27 10:25:00,881 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-07-27 06:25:32] 2025-07-27 10:25:00,884 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745939007/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 06:25:32] 2025-07-27 10:25:00,884 | INFO     | extracted standard info from prmon json
[2025-07-27 06:25:32] 2025-07-27 10:25:00,885 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 06:25:32] 2025-07-27 10:25:00,885 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 06:25:32] 2025-07-27 10:25:00,885 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 06:25:32] 2025-07-27 10:25:00,885 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 06:25:32] 2025-07-27 10:25:00,888 | INFO     | fitting pss+swap vs Time
[2025-07-27 06:25:32] 2025-07-27 10:25:00,888 | INFO     | sum of square deviations: 197203697.5
[2025-07-27 06:25:32] 2025-07-27 10:25:00,889 | INFO     | sum of deviations: -6300528167.0
[2025-07-27 06:25:32] 2025-07-27 10:25:00,889 | INFO     | mean x: 1753609114.5
[2025-07-27 06:25:32] 2025-07-27 10:25:00,889 | INFO     | mean y: 2729288.976744186
[2025-07-27 06:25:32] 2025-07-27 10:25:00,889 | INFO     | -- intersect: 56029384772.02203
[2025-07-27 06:25:32] 2025-07-27 10:25:00,889 | INFO     | intersect: 56029384772.02203
[2025-07-27 06:25:32] 2025-07-27 10:25:00,890 | INFO     | chi2: 0.09110981109538334
[2025-07-27 06:25:32] 2025-07-27 10:25:00,890 | INFO     | -- intersect: 56029384772.02203
[2025-07-27 06:25:32] 2025-07-27 10:25:00,890 | INFO     | current memory leak: -31.95 B/s (using 86 data points, chi2=0.09)
[2025-07-27 06:25:32] 2025-07-27 10:25:00,890 | INFO     | could have reported an average CPU frequency of 2141 MHz (7 samples)
[2025-07-27 06:25:32] 2025-07-27 10:25:00,891 | INFO     | ..............................
[2025-07-27 06:25:32] 2025-07-27 10:25:00,891 | INFO     | . Timing measurements:
[2025-07-27 06:25:32] 2025-07-27 10:25:00,891 | INFO     | . get job = 0 s
[2025-07-27 06:25:32] 2025-07-27 10:25:00,891 | INFO     | . initial setup = 2 s
[2025-07-27 06:25:32] 2025-07-27 10:25:00,891 | INFO     | . payload setup = 9 s
[2025-07-27 06:25:32] 2025-07-27 10:25:00,891 | INFO     | . stage-in = 0 s
[2025-07-27 06:25:32] 2025-07-27 10:25:00,891 | INFO     | . payload execution = 5677 s
[2025-07-27 06:25:32] 2025-07-27 10:25:00,891 | INFO     | . stage-out = 0 s
[2025-07-27 06:25:32] 2025-07-27 10:25:00,891 | INFO     | . log creation = 0 s
[2025-07-27 06:25:32] 2025-07-27 10:25:00,891 | INFO     | ..............................
[2025-07-27 06:25:32] 2025-07-27 10:25:00,975 | INFO     | 
[2025-07-27 06:25:32] 2025-07-27 10:25:00,975 | INFO     | job summary report
[2025-07-27 06:25:32] 2025-07-27 10:25:00,975 | INFO     | --------------------------------------------------
[2025-07-27 06:25:32] 2025-07-27 10:25:00,976 | INFO     | PanDA job id: 6745939007
[2025-07-27 06:25:32] 2025-07-27 10:25:00,976 | INFO     | task id: 45758392
[2025-07-27 06:25:32] 2025-07-27 10:25:00,976 | INFO     | errors: (none)
[2025-07-27 06:25:32] 2025-07-27 10:25:00,976 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 06:25:32] 2025-07-27 10:25:00,976 | INFO     | pilot state: finished 
[2025-07-27 06:25:32] 2025-07-27 10:25:00,976 | INFO     | transexitcode: 0
[2025-07-27 06:25:32] 2025-07-27 10:25:00,977 | INFO     | exeerrorcode: 0
[2025-07-27 06:25:32] 2025-07-27 10:25:00,977 | INFO     | exeerrordiag: 
[2025-07-27 06:25:32] 2025-07-27 10:25:00,977 | INFO     | exitcode: 0
[2025-07-27 06:25:32] 2025-07-27 10:25:00,977 | INFO     | exitmsg: OK
[2025-07-27 06:25:32] 2025-07-27 10:25:00,977 | INFO     | cpuconsumptiontime: 62709 s
[2025-07-27 06:25:32] 2025-07-27 10:25:00,977 | INFO     | nevents: 400
[2025-07-27 06:25:32] 2025-07-27 10:25:00,977 | INFO     | neventsw: 0
[2025-07-27 06:25:32] 2025-07-27 10:25:00,978 | INFO     | pid: 12339
[2025-07-27 06:25:32] 2025-07-27 10:25:00,978 | INFO     | pgrp: 12339
[2025-07-27 06:25:32] 2025-07-27 10:25:00,978 | INFO     | corecount: 12
[2025-07-27 06:25:32] 2025-07-27 10:25:00,978 | INFO     | event service: False
[2025-07-27 06:25:32] 2025-07-27 10:25:00,978 | INFO     | sizes: {0: 2397293, 1: 2397492, 6: 2397754, 12: 2397782, 5691: 2424397, 5692: 2433579, 5699: 2433717}
[2025-07-27 06:25:32] 2025-07-27 10:25:00,978 | INFO     | --------------------------------------------------
[2025-07-27 06:25:32] 2025-07-27 10:25:00,979 | INFO     | 
[2025-07-27 06:25:32] 2025-07-27 10:25:00,979 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 06:25:32] 2025-07-27 10:25:01,002 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 06:25:32] 2025-07-27 10:25:01,003 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 06:25:32] 2025-07-27 10:25:01,003 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 06:25:32] 2025-07-27 10:25:01,003 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 06:25:32] 2025-07-27 10:25:01,003 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 06:25:32] 2025-07-27 10:25:01,003 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 06:25:32] 2025-07-27 10:25:01,004 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 06:25:32] 2025-07-27 10:25:01,004 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 06:25:32] 2025-07-27 10:25:01,004 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 06:25:32] 2025-07-27 10:25:01,004 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 06:25:32] 2025-07-27 10:25:01,004 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 06:25:32] 2025-07-27 10:25:01,004 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 06:25:32] 2025-07-27 10:25:01,005 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 06:25:32] 2025-07-27 10:25:01,005 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 06:25:32] 2025-07-27 10:25:01,005 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 06:25:32] 2025-07-27 10:25:01,005 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 06:25:32] 2025-07-27 10:25:01,005 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 06:25:32] 2025-07-27 10:25:01,005 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 06:25:32] 2025-07-27 10:25:01,006 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 06:25:32] 2025-07-27 10:25:01,006 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 06:25:32] 2025-07-27 10:25:01,006 | INFO     | job 6745939007 has completed (purged errors)
[2025-07-27 06:25:32] 2025-07-27 10:25:01,006 | INFO     | overall cleanup function is called
[2025-07-27 06:25:32] 2025-07-27 10:25:02,015 | INFO     | --- collectZombieJob: --- 10, [12339]
[2025-07-27 06:25:32] 2025-07-27 10:25:02,015 | INFO     | zombie collector waiting for pid 12339
[2025-07-27 06:25:32] 2025-07-27 10:25:02,015 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 06:25:32] 2025-07-27 10:25:02,015 | INFO     | collected zombie processes
[2025-07-27 06:25:32] 2025-07-27 10:25:02,016 | INFO     | will attempt to kill all subprocesses of pid=12339
[2025-07-27 06:25:32] 2025-07-27 10:25:02,109 | INFO     | process IDs to be killed: [12339] (in reverse order)
[2025-07-27 06:25:32] 2025-07-27 10:25:02,163 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 06:25:32] 2025-07-27 10:25:02,164 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 06:25:32] 2025-07-27 10:25:02,167 | INFO     | did not find any defunct processes belonging to 12339
[2025-07-27 06:25:32] 2025-07-27 10:25:02,170 | INFO     | did not find any defunct processes belonging to 12339
[2025-07-27 06:25:32] 2025-07-27 10:25:02,171 | INFO     | ready for new job
[2025-07-27 06:25:32] 2025-07-27 10:25:02,171 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 06:25:32] 2025-07-27 10:25:02,172 | INFO     | ***************************************
[2025-07-27 06:25:32] 2025-07-27 10:25:02,172 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 06:25:32] 2025-07-27 10:25:02,172 | INFO     | ***************************************
[2025-07-27 06:25:32] 2025-07-27 10:25:02,172 | INFO     | 
[2025-07-27 06:25:32] 2025-07-27 10:25:02,173 | INFO     | architecture information:
[2025-07-27 06:25:32] 2025-07-27 10:25:02,173 | INFO     | executing command: cat /etc/os-release
[2025-07-27 06:25:32] 2025-07-27 10:25:02,187 | INFO     | cat /etc/os-release:
[2025-07-27 06:25:32] NAME="CentOS Linux"
[2025-07-27 06:25:32] VERSION="7 (Core)"
[2025-07-27 06:25:32] ID="centos"
[2025-07-27 06:25:32] ID_LIKE="rhel fedora"
[2025-07-27 06:25:32] VERSION_ID="7"
[2025-07-27 06:25:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 06:25:32] ANSI_COLOR="0;31"
[2025-07-27 06:25:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 06:25:32] HOME_URL="https://www.centos.org/"
[2025-07-27 06:25:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 06:25:32] 
[2025-07-27 06:25:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 06:25:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 06:25:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 06:25:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 06:25:32] 
[2025-07-27 06:25:32] 2025-07-27 10:25:02,188 | INFO     | ***************************************
[2025-07-27 06:25:32] 2025-07-27 10:25:02,691 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 06:25:32] 2025-07-27 10:25:02,707 | INFO     | sufficient remaining disk space (29372710912 B)
[2025-07-27 06:25:32] 2025-07-27 10:25:02,707 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 06:25:32] 2025-07-27 10:25:02,707 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 06:25:32] 2025-07-27 10:25:02,708 | INFO     | update_server=False
[2025-07-27 06:25:32] 2025-07-27 10:25:02,708 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 06:25:32] 2025-07-27 10:25:02,708 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 06:25:32] 2025-07-27 10:25:02,708 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 06:25:32] 2025-07-27 10:25:02,950 | INFO     | all job control threads have been joined
[2025-07-27 06:25:32] 2025-07-27 10:25:03,043 | INFO     | all data control threads have been joined
[2025-07-27 06:25:32] 2025-07-27 10:25:03,082 | INFO     | all payload control threads have been joined
[2025-07-27 06:25:32] 2025-07-27 10:25:03,634 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 06:25:32] 2025-07-27 10:25:03,634 | INFO     | aborting loop
[2025-07-27 06:25:32] 2025-07-27 10:25:03,713 | INFO     | [job] retrieve thread has finished
[2025-07-27 06:25:32] 2025-07-27 10:25:03,714 | INFO     | [job] queue monitor thread has finished
[2025-07-27 06:25:32] 2025-07-27 10:25:03,716 | INFO     | [payload] validate_post thread has finished
[2025-07-27 06:25:32] 2025-07-27 10:25:03,821 | INFO     | [payload] failed_post thread has finished
[2025-07-27 06:25:32] 2025-07-27 10:25:03,955 | INFO     | [job] control thread has finished
[2025-07-27 06:25:32] 2025-07-27 10:25:04,049 | INFO     | [data] control thread has finished
[2025-07-27 06:25:32] 2025-07-27 10:25:04,078 | INFO     | [job] validate thread has finished
[2025-07-27 06:25:32] 2025-07-27 10:25:04,083 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 06:25:32] 2025-07-27 10:25:04,088 | INFO     | [payload] control thread has finished
[2025-07-27 06:25:32] 2025-07-27 10:25:04,480 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 06:25:32] 2025-07-27 10:25:04,516 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 06:25:32] 2025-07-27 10:25:04,529 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 06:25:32] 2025-07-27 10:25:04,640 | INFO     | [job] job monitor thread has finished
[2025-07-27 06:25:32] 2025-07-27 10:25:04,714 | INFO     | [data] copytool_out thread has finished
[2025-07-27 06:25:32] 2025-07-27 10:25:04,779 | INFO     | [data] copytool_in thread has finished
[2025-07-27 06:25:32] 2025-07-27 10:25:04,783 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 06:25:32] 2025-07-27 10:25:08,521 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 06:25:32] 2025-07-27 10:25:10,247 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140486010849088)>', '<ExcThread(monitor, started 140485343565568)>']
[2025-07-27 06:25:32] 2025-07-27 10:25:15,267 | INFO     | all workflow threads have been joined
[2025-07-27 06:25:32] 2025-07-27 10:25:15,280 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 06:25:32] 2025-07-27 10:25:15,281 | INFO     | traces error code: 0
[2025-07-27 06:25:32] 2025-07-27 10:25:15,281 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 06:25:32] 2025-07-27 10:25:32,327 | INFO     | PID=4990 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-07-27 06:25:32] 2025-07-27 10:25:32,327 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 06:25:32] 2025-07-27 10:25:32,327 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 06:25:32] 2025-07-27 10:25:32,328 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 06:25:32] 2025-07-27 10:25:32,328 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 06:25:32] 2025-07-27 10:25:32,328 | INFO     | [monitor] control thread has ended
[2025-07-27 06:25:32] 2025-07-27 10:25:32,431 [wrapper] ==== pilot stdout END ====
[2025-07-27 06:25:32] 2025-07-27 10:25:32,436 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 06:25:32] 2025-07-27 10:25:32,440 [wrapper] pilotpid: 4990
[2025-07-27 06:25:32] 2025-07-27 10:25:32,444 [wrapper] Pilot exit status: 0
[2025-07-27 06:25:32] 2025-07-27 10:25:32,460 [wrapper] pandaids: 6745939007
[2025-07-27 06:25:32] 2025-07-27 10:25:32,500 [wrapper] cleanup supervisor_pilot 17051 4991
[2025-07-27 06:25:32] 2025-07-27 10:25:32,504 [wrapper] Test setup, not cleaning
[2025-07-27 06:25:32] 2025-07-27 10:25:32,508 [wrapper] apfmon messages muted
[2025-07-27 06:25:32] 2025-07-27 10:25:32,512 [wrapper] ==== wrapper stdout END ====
[2025-07-27 06:25:32] 2025-07-27 10:25:32,515 [wrapper] ==== wrapper stderr END ====
[2025-07-27 06:25:32]  *** Error codes and diagnostics ***
[2025-07-27 06:25:32]     "exeErrorCode": 0,
[2025-07-27 06:25:32]     "exeErrorDiag": "",
[2025-07-27 06:25:32]     "pilotErrorCode": 0,
[2025-07-27 06:25:32]     "pilotErrorDiag": "",
[2025-07-27 06:25:32]  *** Listing of results directory ***
[2025-07-27 06:25:32] total 405680
[2025-07-27 06:25:32] -rw-r--r-- 1 boincer umatlas    530466 Jul 26 20:36 pilot3.tar.gz
[2025-07-27 06:25:32] -rwx------ 1 boincer umatlas     36292 Jul 26 21:05 runpilot2-wrapper.sh
[2025-07-27 06:25:32] -rw-r--r-- 1 boincer umatlas      5112 Jul 26 21:05 queuedata.json
[2025-07-27 06:25:32] -rw-r--r-- 1 boincer umatlas       100 Jul 27 04:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 06:25:32] -rwxr-xr-x 1 boincer umatlas      7986 Jul 27 04:49 run_atlas
[2025-07-27 06:25:32] -rw-r--r-- 1 boincer umatlas       105 Jul 27 04:49 job.xml
[2025-07-27 06:25:32] -rw-r--r-- 2 boincer umatlas 236631228 Jul 27 04:49 EVNT.45758390._000003.pool.root.1
[2025-07-27 06:25:32] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 04:49 start_atlas.sh
[2025-07-27 06:25:32] drwxrwx--x 2 boincer umatlas      4096 Jul 27 04:49 shared
[2025-07-27 06:25:32] -rw-r--r-- 2 boincer umatlas    542879 Jul 27 04:49 input.tar.gz
[2025-07-27 06:25:32] -rw-r--r-- 1 boincer umatlas         0 Jul 27 04:49 boinc_lockfile
[2025-07-27 06:25:32] -rw-r--r-- 1 boincer umatlas      2557 Jul 27 04:49 pandaJob.out
[2025-07-27 06:25:32] -rw------- 1 boincer umatlas    980109 Jul 27 04:49 agis_schedconf.cvmfs.json
[2025-07-27 06:25:32] -rw------- 1 boincer umatlas   1593052 Jul 27 04:49 agis_ddmendpoints.agis.ALL.json
[2025-07-27 06:25:32] drwx------ 4 boincer umatlas      4096 Jul 27 04:49 pilot3
[2025-07-27 06:25:32] -rw-r--r-- 1 boincer umatlas      5868 Jul 27 06:20 init_data.xml
[2025-07-27 06:25:32] -rw------- 1 boincer umatlas 173104941 Jul 27 06:24 HITS.45758392._000060.pool.root.1
[2025-07-27 06:25:32] -rw-r--r-- 1 boincer umatlas       529 Jul 27 06:24 boinc_task_state.xml
[2025-07-27 06:25:32] -rw------- 1 boincer umatlas      1062 Jul 27 06:24 memory_monitor_summary.json
[2025-07-27 06:25:32] -rw------- 1 boincer umatlas    373013 Jul 27 06:24 log.45758392._000060.job.log.tgz.1
[2025-07-27 06:25:32] -rw------- 1 boincer umatlas      7841 Jul 27 06:25 heartbeat.json
[2025-07-27 06:25:32] -rw-r--r-- 1 boincer umatlas      8192 Jul 27 06:25 boinc_mmap_file
[2025-07-27 06:25:32] -rw-r--r-- 1 boincer umatlas        27 Jul 27 06:25 wrapper_checkpoint.txt
[2025-07-27 06:25:32] -rw------- 1 boincer umatlas        95 Jul 27 06:25 pilot_heartbeat.json
[2025-07-27 06:25:32] -rw------- 1 boincer umatlas       744 Jul 27 06:25 pilotlog.txt
[2025-07-27 06:25:32] -rw------- 1 boincer umatlas    534477 Jul 27 06:25 log.45758392._000060.job.log.1
[2025-07-27 06:25:32] -rw------- 1 boincer umatlas       357 Jul 27 06:25 output.list
[2025-07-27 06:25:32] -rw-r--r-- 1 boincer umatlas       620 Jul 27 06:25 runtime_log
[2025-07-27 06:25:32] -rw------- 1 boincer umatlas    921600 Jul 27 06:25 result.tar.gz
[2025-07-27 06:25:32] -rw-r--r-- 1 boincer umatlas      8662 Jul 27 06:25 runtime_log.err
[2025-07-27 06:25:32] -rw------- 1 boincer umatlas       659 Jul 27 06:25 NYLMDmp04z7n9Rq4apOajLDm4fhM0noT9bVof3QYDmKi1KDmNtbtJn.diag
[2025-07-27 06:25:32] -rw-r--r-- 1 boincer umatlas     21680 Jul 27 06:25 stderr.txt
[2025-07-27 06:25:32] HITS file was successfully produced:
[2025-07-27 06:25:32] -rw------- 1 boincer umatlas 173104941 Jul 27 06:24 shared/HITS.pool.root.1
[2025-07-27 06:25:32]  *** Contents of shared directory: ***
[2025-07-27 06:25:32] total 401584
[2025-07-27 06:25:32] -rw-r--r-- 2 boincer umatlas 236631228 Jul 27 04:49 ATLAS.root_0
[2025-07-27 06:25:32] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 04:49 start_atlas.sh
[2025-07-27 06:25:32] -rw-r--r-- 2 boincer umatlas    542879 Jul 27 04:49 input.tar.gz
[2025-07-27 06:25:32] -rw------- 1 boincer umatlas 173104941 Jul 27 06:24 HITS.pool.root.1
[2025-07-27 06:25:32] -rw------- 1 boincer umatlas    921600 Jul 27 06:25 result.tar.gz
06:25:34 (1202): run_atlas exited; CPU time 62676.476706
06:25:34 (1202): called boinc_finish(0)

</stderr_txt>
]]>

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