Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:39:51 (4143709): wrapper (7.7.26015): starting
17:39:51 (4143709): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 17:39:51] Arguments: --nthreads 12
[2025-07-27 17:39:51] Threads: 12
[2025-07-27 17:39:51] Checking for CVMFS
[2025-07-27 17:39:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 17:39:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 17:39:51] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 17:39:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 17:39:51] 2.13.1.0 3500122 1653 76168 148817 2 57 3570399 4097024 0 130560 0 1450895 99.992 56785 8882 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://188.184.28.244:3128 1
[2025-07-27 17:39:51] CVMFS is ok
[2025-07-27 17:39:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 17:39:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 17:39:51] Further information can be found at the LHC@home message board.
[2025-07-27 17:39:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 17:39:51] Checking for apptainer binary...
[2025-07-27 17:39:51] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2025-07-27 17:39:51] apptainer is not installed, using version from CVMFS
[2025-07-27 17:39:51] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 17:39:51] pckelar6.cern.ch
[2025-07-27 17:39:51] apptainer works
[2025-07-27 17:39:51] Set ATHENA_PROC_NUMBER=12
[2025-07-27 17:39:51] Set ATHENA_CORE_NUMBER=12
[2025-07-27 17:39:51] Starting ATLAS job with PandaID=6745982570
[2025-07-27 17:39:51] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 18:59:17]  *** The last 200 lines of the pilot log: ***
[2025-07-27 18:59:17]  protocol_id=None
[2025-07-27 18:59:17]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 18:59:17]  replicas=None
[2025-07-27 18:59:17]  scope=mc23_13p6TeV
[2025-07-27 18:59:17]  status=None
[2025-07-27 18:59:17]  status_code=0
[2025-07-27 18:59:17]  storage_token=
[2025-07-27 18:59:17]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-6745982570/log.45758713._000032.job.log.tgz.1
[2025-07-27 18:59:17]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/07/9e/log.45758713._000032.job.log.tgz.1
[2025-07-27 18:59:17]  workdir=None
[2025-07-27 18:59:17] ]
[2025-07-27 18:59:17] 2025-07-27 16:58:37,897 | INFO     | transferring file log.45758713._000032.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6745982570/log.45758713._000032.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-07-27 18:59:17] 2025-07-27 16:58:37,897 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6745982570/log.45758713._000032.job.log.tgz.1 /var/lib/boinc/slots/0/log.45758713._000032.job
[2025-07-27 18:59:17] 2025-07-27 16:58:37,912 | INFO     | adding to output.list: log.45758713._000032.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/07/9e/log.45758713._000032.job.log.tg
[2025-07-27 18:59:17] 2025-07-27 16:58:37,912 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 18:59:17] 2025-07-27 16:58:37,912 | INFO     | summary of transferred files:
[2025-07-27 18:59:17] 2025-07-27 16:58:37,913 | INFO     |  -- lfn=log.45758713._000032.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 18:59:17] 2025-07-27 16:58:37,913 | INFO     | stage-out finished correctly
[2025-07-27 18:59:17] 2025-07-27 16:58:39,081 | INFO     | monitor loop #354: job 0:6745982570 is in state 'finished'
[2025-07-27 18:59:17] 2025-07-27 16:58:39,081 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 18:59:17] 2025-07-27 16:58:40,256 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 18:59:17] 2025-07-27 16:58:40,318 | INFO     | job 6745982570 has state=finished
[2025-07-27 18:59:17] 2025-07-27 16:58:40,318 | INFO     | preparing for final server update for job 6745982570 in state='finished'
[2025-07-27 18:59:17] 2025-07-27 16:58:40,318 | INFO     | this job has now completed (state=finished)
[2025-07-27 18:59:17] 2025-07-27 16:58:40,318 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 18:59:17] 2025-07-27 16:58:40,318 | INFO     | log transfer has been attempted: DONE
[2025-07-27 18:59:17] 2025-07-27 16:58:40,318 | INFO     | job 6745982570 has finished - writing final server update
[2025-07-27 18:59:17] 2025-07-27 16:58:40,319 | INFO     | total number of processed events: 400 (read)
[2025-07-27 18:59:17] 2025-07-27 16:58:40,320 | INFO     | executing command: lscpu
[2025-07-27 18:59:17] 2025-07-27 16:58:40,340 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 18:59:17] 2025-07-27 16:58:41,584 | INFO     | monitor loop #355: job 0:6745982570 is in state 'finished'
[2025-07-27 18:59:17] 2025-07-27 16:58:41,584 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 18:59:17] 2025-07-27 16:58:42,967 | INFO     | PID=4147401 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 18:59:17] 2025-07-27 16:58:44,087 | INFO     | monitor loop #356: job 0:6745982570 is in state 'finished'
[2025-07-27 18:59:17] 2025-07-27 16:58:44,087 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 18:59:17] 2025-07-27 16:58:44,463 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-27 18:59:17] 2025-07-27 16:58:44,465 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 2089.9760833333335
[2025-07-27 18:59:17] 2025-07-27 16:58:44,466 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6745982570/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 18:59:17] 2025-07-27 16:58:44,467 | INFO     | extracted standard info from prmon json
[2025-07-27 18:59:17] 2025-07-27 16:58:44,467 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 18:59:17] 2025-07-27 16:58:44,467 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 18:59:17] 2025-07-27 16:58:44,468 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 18:59:17] 2025-07-27 16:58:44,468 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 18:59:17] 2025-07-27 16:58:44,469 | INFO     | fitting pss+swap vs Time
[2025-07-27 18:59:17] 2025-07-27 16:58:44,469 | INFO     | sum of square deviations: 106336877.5
[2025-07-27 18:59:17] 2025-07-27 16:58:44,469 | INFO     | sum of deviations: -12434792050.000004
[2025-07-27 18:59:17] 2025-07-27 16:58:44,470 | INFO     | mean x: 1753633230.5
[2025-07-27 18:59:17] 2025-07-27 16:58:44,470 | INFO     | mean y: 2925848.1714285715
[2025-07-27 18:59:17] 2025-07-27 16:58:44,470 | INFO     | -- intersect: 205068798252.00635
[2025-07-27 18:59:17] 2025-07-27 16:58:44,470 | INFO     | intersect: 205068798252.00635
[2025-07-27 18:59:17] 2025-07-27 16:58:44,470 | INFO     | chi2: 0.12612269893940217
[2025-07-27 18:59:17] 2025-07-27 16:58:44,470 | INFO     | -- intersect: 205068798252.00635
[2025-07-27 18:59:17] 2025-07-27 16:58:44,470 | INFO     | current memory leak: -116.94 B/s (using 70 data points, chi2=0.13)
[2025-07-27 18:59:17] 2025-07-27 16:58:44,470 | INFO     | could have reported an average CPU frequency of 2561 MHz (6 samples)
[2025-07-27 18:59:17] 2025-07-27 16:58:44,471 | INFO     | ..............................
[2025-07-27 18:59:17] 2025-07-27 16:58:44,471 | INFO     | . Timing measurements:
[2025-07-27 18:59:17] 2025-07-27 16:58:44,471 | INFO     | . get job = 0 s
[2025-07-27 18:59:17] 2025-07-27 16:58:44,471 | INFO     | . initial setup = 1 s
[2025-07-27 18:59:17] 2025-07-27 16:58:44,471 | INFO     | . payload setup = 5 s
[2025-07-27 18:59:17] 2025-07-27 16:58:44,471 | INFO     | . stage-in = 0 s
[2025-07-27 18:59:17] 2025-07-27 16:58:44,471 | INFO     | . payload execution = 4695 s
[2025-07-27 18:59:17] 2025-07-27 16:58:44,471 | INFO     | . stage-out = 0 s
[2025-07-27 18:59:17] 2025-07-27 16:58:44,471 | INFO     | . log creation = 0 s
[2025-07-27 18:59:17] 2025-07-27 16:58:44,471 | INFO     | ..............................
[2025-07-27 18:59:17] 2025-07-27 16:58:44,539 | INFO     | 
[2025-07-27 18:59:17] 2025-07-27 16:58:44,540 | INFO     | job summary report
[2025-07-27 18:59:17] 2025-07-27 16:58:44,540 | INFO     | --------------------------------------------------
[2025-07-27 18:59:17] 2025-07-27 16:58:44,540 | INFO     | PanDA job id: 6745982570
[2025-07-27 18:59:17] 2025-07-27 16:58:44,540 | INFO     | task id: 45758713
[2025-07-27 18:59:17] 2025-07-27 16:58:44,540 | INFO     | errors: (none)
[2025-07-27 18:59:17] 2025-07-27 16:58:44,540 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 18:59:17] 2025-07-27 16:58:44,540 | INFO     | pilot state: finished 
[2025-07-27 18:59:17] 2025-07-27 16:58:44,540 | INFO     | transexitcode: 0
[2025-07-27 18:59:17] 2025-07-27 16:58:44,540 | INFO     | exeerrorcode: 0
[2025-07-27 18:59:17] 2025-07-27 16:58:44,540 | INFO     | exeerrordiag: 
[2025-07-27 18:59:17] 2025-07-27 16:58:44,540 | INFO     | exitcode: 0
[2025-07-27 18:59:17] 2025-07-27 16:58:44,540 | INFO     | exitmsg: OK
[2025-07-27 18:59:17] 2025-07-27 16:58:44,541 | INFO     | cpuconsumptiontime: 49845 s
[2025-07-27 18:59:17] 2025-07-27 16:58:44,541 | INFO     | nevents: 400
[2025-07-27 18:59:17] 2025-07-27 16:58:44,541 | INFO     | neventsw: 0
[2025-07-27 18:59:17] 2025-07-27 16:58:44,541 | INFO     | pid: 4154563
[2025-07-27 18:59:17] 2025-07-27 16:58:44,541 | INFO     | pgrp: 4154563
[2025-07-27 18:59:17] 2025-07-27 16:58:44,541 | INFO     | corecount: 12
[2025-07-27 18:59:17] 2025-07-27 16:58:44,541 | INFO     | event service: False
[2025-07-27 18:59:17] 2025-07-27 16:58:44,541 | INFO     | sizes: {0: 2397298, 1: 2397497, 3: 2397759, 11: 2397787, 4704: 2424048, 4706: 2433046, 4708: 2433230, 4712: 2433424}
[2025-07-27 18:59:17] 2025-07-27 16:58:44,541 | INFO     | --------------------------------------------------
[2025-07-27 18:59:17] 2025-07-27 16:58:44,541 | INFO     | 
[2025-07-27 18:59:17] 2025-07-27 16:58:44,541 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-07-27 18:59:17] 2025-07-27 16:58:44,559 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 18:59:17] 2025-07-27 16:58:44,560 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 18:59:17] 2025-07-27 16:58:44,560 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 18:59:17] 2025-07-27 16:58:44,560 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 18:59:17] 2025-07-27 16:58:44,560 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 18:59:17] 2025-07-27 16:58:44,560 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 18:59:17] 2025-07-27 16:58:44,560 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 18:59:17] 2025-07-27 16:58:44,560 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 18:59:17] 2025-07-27 16:58:44,560 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 18:59:17] 2025-07-27 16:58:44,560 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 18:59:17] 2025-07-27 16:58:44,560 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 18:59:17] 2025-07-27 16:58:44,561 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 18:59:17] 2025-07-27 16:58:44,561 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 18:59:17] 2025-07-27 16:58:44,561 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 18:59:17] 2025-07-27 16:58:44,561 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 18:59:17] 2025-07-27 16:58:44,561 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 18:59:17] 2025-07-27 16:58:44,561 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 18:59:17] 2025-07-27 16:58:44,561 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 18:59:17] 2025-07-27 16:58:44,561 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 18:59:17] 2025-07-27 16:58:44,561 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 18:59:17] 2025-07-27 16:58:44,561 | INFO     | job 6745982570 has completed (purged errors)
[2025-07-27 18:59:17] 2025-07-27 16:58:44,562 | INFO     | overall cleanup function is called
[2025-07-27 18:59:17] 2025-07-27 16:58:45,568 | INFO     | --- collectZombieJob: --- 10, [4154563]
[2025-07-27 18:59:17] 2025-07-27 16:58:45,569 | INFO     | zombie collector waiting for pid 4154563
[2025-07-27 18:59:17] 2025-07-27 16:58:45,569 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 18:59:17] 2025-07-27 16:58:45,569 | INFO     | collected zombie processes
[2025-07-27 18:59:17] 2025-07-27 16:58:45,569 | INFO     | will attempt to kill all subprocesses of pid=4154563
[2025-07-27 18:59:17] 2025-07-27 16:58:45,650 | INFO     | process IDs to be killed: [4154563] (in reverse order)
[2025-07-27 18:59:17] 2025-07-27 16:58:45,682 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 18:59:17] 2025-07-27 16:58:45,682 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 18:59:17] 2025-07-27 16:58:45,685 | INFO     | did not find any defunct processes belonging to 4154563
[2025-07-27 18:59:17] 2025-07-27 16:58:45,687 | INFO     | did not find any defunct processes belonging to 4154563
[2025-07-27 18:59:17] 2025-07-27 16:58:45,687 | INFO     | ready for new job
[2025-07-27 18:59:17] 2025-07-27 16:58:45,687 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 18:59:17] 2025-07-27 16:58:45,688 | INFO     | ***************************************
[2025-07-27 18:59:17] 2025-07-27 16:58:45,688 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 18:59:17] 2025-07-27 16:58:45,688 | INFO     | ***************************************
[2025-07-27 18:59:17] 2025-07-27 16:58:45,688 | INFO     | 
[2025-07-27 18:59:17] 2025-07-27 16:58:45,689 | INFO     | architecture information:
[2025-07-27 18:59:17] 2025-07-27 16:58:45,689 | INFO     | executing command: cat /etc/os-release
[2025-07-27 18:59:17] 2025-07-27 16:58:45,697 | INFO     | cat /etc/os-release:
[2025-07-27 18:59:17] NAME="CentOS Linux"
[2025-07-27 18:59:17] VERSION="7 (Core)"
[2025-07-27 18:59:17] ID="centos"
[2025-07-27 18:59:17] ID_LIKE="rhel fedora"
[2025-07-27 18:59:17] VERSION_ID="7"
[2025-07-27 18:59:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 18:59:17] ANSI_COLOR="0;31"
[2025-07-27 18:59:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 18:59:17] HOME_URL="https://www.centos.org/"
[2025-07-27 18:59:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 18:59:17] 
[2025-07-27 18:59:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 18:59:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 18:59:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 18:59:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 18:59:17] 
[2025-07-27 18:59:17] 2025-07-27 16:58:45,697 | INFO     | ***************************************
[2025-07-27 18:59:17] 2025-07-27 16:58:46,200 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-07-27 18:59:17] 2025-07-27 16:58:46,212 | INFO     | sufficient remaining disk space (869544230912 B)
[2025-07-27 18:59:17] 2025-07-27 16:58:46,212 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 18:59:17] 2025-07-27 16:58:46,212 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 18:59:17] 2025-07-27 16:58:46,212 | INFO     | update_server=False
[2025-07-27 18:59:17] 2025-07-27 16:58:46,212 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 18:59:17] 2025-07-27 16:58:46,212 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 18:59:17] 2025-07-27 16:58:46,212 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 18:59:17] 2025-07-27 16:58:46,323 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 18:59:17] 2025-07-27 16:58:46,590 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-27 18:59:17] 2025-07-27 16:58:46,590 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-27 18:59:17] 2025-07-27 16:58:46,590 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 18:59:17] 2025-07-27 16:58:46,590 | INFO     | will abort loop
[2025-07-27 18:59:17] 2025-07-27 16:58:46,788 | INFO     | all payload control threads have been joined
[2025-07-27 18:59:17] 2025-07-27 16:58:46,959 | INFO     | all data control threads have been joined
[2025-07-27 18:59:17] 2025-07-27 16:58:47,217 | INFO     | [job] retrieve thread has finished
[2025-07-27 18:59:17] 2025-07-27 16:58:47,218 | INFO     | [job] queue monitor thread has finished
[2025-07-27 18:59:17] 2025-07-27 16:58:47,334 | INFO     | [payload] validate_post thread has finished
[2025-07-27 18:59:17] 2025-07-27 16:58:47,542 | INFO     | [payload] failed_post thread has finished
[2025-07-27 18:59:17] 2025-07-27 16:58:47,568 | INFO     | all job control threads have been joined
[2025-07-27 18:59:17] 2025-07-27 16:58:47,595 | INFO     | [job] job monitor thread has finished
[2025-07-27 18:59:17] 2025-07-27 16:58:47,734 | INFO     | [job] validate thread has finished
[2025-07-27 18:59:17] 2025-07-27 16:58:47,793 | INFO     | [payload] control thread has finished
[2025-07-27 18:59:17] 2025-07-27 16:58:47,964 | INFO     | [data] control thread has finished
[2025-07-27 18:59:17] 2025-07-27 16:58:47,996 | INFO     | [data] copytool_in thread has finished
[2025-07-27 18:59:17] 2025-07-27 16:58:48,011 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 18:59:17] 2025-07-27 16:58:48,143 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 18:59:17] 2025-07-27 16:58:48,166 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 18:59:17] 2025-07-27 16:58:48,218 | INFO     | [data] copytool_out thread has finished
[2025-07-27 18:59:17] 2025-07-27 16:58:48,573 | INFO     | [job] control thread has finished
[2025-07-27 18:59:17] 2025-07-27 16:58:50,328 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 18:59:17] 2025-07-27 16:58:56,378 | INFO     | job.realtimelogging is not enabled
[2025-07-27 18:59:17] 2025-07-27 16:58:57,383 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 18:59:17] 2025-07-27 16:58:57,511 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139882536314688)>', '<ExcThread(monitor, started 139881649010432)>']
[2025-07-27 18:59:17] 2025-07-27 16:59:02,537 | INFO     | all workflow threads have been joined
[2025-07-27 18:59:17] 2025-07-27 16:59:02,537 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 18:59:17] 2025-07-27 16:59:02,537 | INFO     | traces error code: 0
[2025-07-27 18:59:17] 2025-07-27 16:59:02,537 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 18:59:17] 2025-07-27 16:59:17,156 | INFO     | PID=4147401 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 18:59:17] 2025-07-27 16:59:17,157 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 18:59:17] 2025-07-27 16:59:17,157 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 18:59:17] 2025-07-27 16:59:17,157 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 18:59:17] 2025-07-27 16:59:17,157 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 18:59:17] 2025-07-27 16:59:17,157 | INFO     | [monitor] control thread has ended
[2025-07-27 18:59:17] 2025-07-27 16:59:17,226 [wrapper] ==== pilot stdout END ====
[2025-07-27 18:59:17] 2025-07-27 16:59:17,229 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 18:59:17] 2025-07-27 16:59:17,231 [wrapper] pilotpid: 4147401
[2025-07-27 18:59:17] 2025-07-27 16:59:17,234 [wrapper] Pilot exit status: 0
[2025-07-27 18:59:17] 2025-07-27 16:59:17,242 [wrapper] pandaids: 6745982570
[2025-07-27 18:59:17] 2025-07-27 16:59:17,262 [wrapper] cleanup supervisor_pilot 4171926 4147402
[2025-07-27 18:59:17] 2025-07-27 16:59:17,264 [wrapper] Test setup, not cleaning
[2025-07-27 18:59:17] 2025-07-27 16:59:17,266 [wrapper] apfmon messages muted
[2025-07-27 18:59:17] 2025-07-27 16:59:17,268 [wrapper] ==== wrapper stdout END ====
[2025-07-27 18:59:17] 2025-07-27 16:59:17,270 [wrapper] ==== wrapper stderr END ====
[2025-07-27 18:59:17]  *** Error codes and diagnostics ***
[2025-07-27 18:59:17]     "exeErrorCode": 0,
[2025-07-27 18:59:17]     "exeErrorDiag": "",
[2025-07-27 18:59:17]     "pilotErrorCode": 0,
[2025-07-27 18:59:17]     "pilotErrorDiag": "",
[2025-07-27 18:59:17]  *** Listing of results directory ***
[2025-07-27 18:59:17] total 417844
[2025-07-27 18:59:17] -rw-r--r--. 1 boinc boinc    530466 Jul 27 05:36 pilot3.tar.gz
[2025-07-27 18:59:17] -rw-r--r--. 1 boinc boinc      5112 Jul 27 05:48 queuedata.json
[2025-07-27 18:59:17] -rwx------. 1 boinc boinc     36292 Jul 27 05:49 runpilot2-wrapper.sh
[2025-07-27 18:59:17] -rw-r--r--. 1 boinc boinc       100 Jul 27 17:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 18:59:17] -rwxr-xr-x. 1 boinc boinc      7986 Jul 27 17:39 run_atlas
[2025-07-27 18:59:17] -rw-r--r--. 1 boinc boinc       105 Jul 27 17:39 job.xml
[2025-07-27 18:59:17] -rw-r--r--. 2 boinc boinc 248596058 Jul 27 17:39 EVNT.45758711._000002.pool.root.1
[2025-07-27 18:59:17] -rw-r--r--. 2 boinc boinc     15095 Jul 27 17:39 start_atlas.sh
[2025-07-27 18:59:17] drwxrwx--x. 2 boinc boinc        68 Jul 27 17:39 shared
[2025-07-27 18:59:17] -rw-r--r--. 2 boinc boinc    542882 Jul 27 17:39 input.tar.gz
[2025-07-27 18:59:17] -rw-r--r--. 1 boinc boinc      6291 Jul 27 17:39 init_data.xml
[2025-07-27 18:59:17] -rw-r--r--. 1 boinc boinc         0 Jul 27 17:39 boinc_lockfile
[2025-07-27 18:59:17] -rw-r--r--. 1 boinc boinc      2562 Jul 27 17:39 pandaJob.out
[2025-07-27 18:59:17] -rw-------. 1 boinc boinc    980101 Jul 27 17:39 agis_schedconf.cvmfs.json
[2025-07-27 18:59:17] -rw-------. 1 boinc boinc   1593052 Jul 27 17:39 agis_ddmendpoints.agis.ALL.json
[2025-07-27 18:59:17] drwx------. 4 boinc boinc      4096 Jul 27 17:39 pilot3
[2025-07-27 18:59:17] -rw-------. 1 boinc boinc 173791787 Jul 27 18:58 HITS.45758713._000032.pool.root.1
[2025-07-27 18:59:17] -rw-r--r--. 1 boinc boinc       529 Jul 27 18:58 boinc_task_state.xml
[2025-07-27 18:59:17] -rw-------. 1 boinc boinc      1027 Jul 27 18:58 memory_monitor_summary.json
[2025-07-27 18:59:17] -rw-------. 1 boinc boinc    355881 Jul 27 18:58 log.45758713._000032.job.log.tgz.1
[2025-07-27 18:59:17] -rw-------. 1 boinc boinc      7788 Jul 27 18:58 heartbeat.json
[2025-07-27 18:59:17] -rw-r--r--. 1 boinc boinc      8192 Jul 27 18:59 boinc_mmap_file
[2025-07-27 18:59:17] -rw-r--r--. 1 boinc boinc        27 Jul 27 18:59 wrapper_checkpoint.txt
[2025-07-27 18:59:17] -rw-------. 1 boinc boinc       747 Jul 27 18:59 pilotlog.txt
[2025-07-27 18:59:17] -rw-------. 1 boinc boinc        95 Jul 27 18:59 pilot_heartbeat.json
[2025-07-27 18:59:17] -rw-------. 1 boinc boinc    455183 Jul 27 18:59 log.45758713._000032.job.log.1
[2025-07-27 18:59:17] -rw-------. 1 boinc boinc       357 Jul 27 18:59 output.list
[2025-07-27 18:59:17] -rw-r--r--. 1 boinc boinc       620 Jul 27 18:59 runtime_log
[2025-07-27 18:59:17] -rw-------. 1 boinc boinc    829440 Jul 27 18:59 result.tar.gz
[2025-07-27 18:59:17] -rw-r--r--. 1 boinc boinc      8684 Jul 27 18:59 runtime_log.err
[2025-07-27 18:59:17] -rw-------. 1 boinc boinc       655 Jul 27 18:59 0QFODmjZ7z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm28TLDmEm4f0m.diag
[2025-07-27 18:59:17] -rw-r--r--. 1 boinc boinc     22028 Jul 27 18:59 stderr.txt
[2025-07-27 18:59:17] HITS file was successfully produced:
[2025-07-27 18:59:17] -rw-------. 1 boinc boinc 173791787 Jul 27 18:58 shared/HITS.pool.root.1
[2025-07-27 18:59:17]  *** Contents of shared directory: ***
[2025-07-27 18:59:17] total 413852
[2025-07-27 18:59:17] -rw-r--r--. 2 boinc boinc 248596058 Jul 27 17:39 ATLAS.root_0
[2025-07-27 18:59:17] -rw-r--r--. 2 boinc boinc     15095 Jul 27 17:39 start_atlas.sh
[2025-07-27 18:59:17] -rw-r--r--. 2 boinc boinc    542882 Jul 27 17:39 input.tar.gz
[2025-07-27 18:59:17] -rw-------. 1 boinc boinc 173791787 Jul 27 18:58 HITS.pool.root.1
[2025-07-27 18:59:17] -rw-------. 1 boinc boinc    829440 Jul 27 18:59 result.tar.gz
18:59:18 (4143709): run_atlas exited; CPU time 49877.140385
18:59:18 (4143709): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN