Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
04:41:58 (2710730): wrapper (7.7.26015): starting
04:41:58 (2710730): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 04:41:58] Arguments: --nthreads 8
[2025-07-27 04:41:58] Threads: 8
[2025-07-27 04:41:58] Checking for CVMFS
[2025-07-27 04:41:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 04:41:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 04:41:58] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 04:41:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 04:41:58] 2.13.1.0 116762 8167 209528 148805 3 188 34837251 40960001 12782 16776704 0 112810230 99.999 317118 38262 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 04:41:58] CVMFS is ok
[2025-07-27 04:41:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 04:41:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 04:41:58] Further information can be found at the LHC@home message board.
[2025-07-27 04:41:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 04:41:58] Checking for apptainer binary...
[2025-07-27 04:41:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 04:41:58] Running /usr/bin/apptainer --version
[2025-07-27 04:41:58] apptainer version 1.4.1-1.el9
[2025-07-27 04:41:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 04:41:59] c-208-39.aglt2.org
[2025-07-27 04:41:59] apptainer works
[2025-07-27 04:41:59] Set ATHENA_PROC_NUMBER=8
[2025-07-27 04:41:59] Set ATHENA_CORE_NUMBER=8
[2025-07-27 04:41:59] Starting ATLAS job with PandaID=6745891110
[2025-07-27 04:41:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 05:47:21]  *** The last 200 lines of the pilot log: ***
[2025-07-27 05:47:21]  is_tar=False
[2025-07-27 05:47:21]  lfn=log.45758408._000097.job.log.tgz.1
[2025-07-27 05:47:21]  mtime=0
[2025-07-27 05:47:21]  protocol_id=None
[2025-07-27 05:47:21]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 05:47:21]  replicas=None
[2025-07-27 05:47:21]  scope=mc23_13p6TeV
[2025-07-27 05:47:21]  status=None
[2025-07-27 05:47:21]  status_code=0
[2025-07-27 05:47:21]  storage_token=
[2025-07-27 05:47:21]  surl=/tmp/boinchome/slots/6/PanDA_Pilot-6745891110/log.45758408._000097.job.log.tgz.1
[2025-07-27 05:47:21]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9f/2f/log.45758408._000097.job.log.tgz.1
[2025-07-27 05:47:21]  workdir=None
[2025-07-27 05:47:21] ]
[2025-07-27 05:47:21] 2025-07-27 09:46:43,206 | INFO     | transferring file log.45758408._000097.job.log.tgz.1 from /tmp/boinchome/slots/6/PanDA_Pilot-6745891110/log.45758408._000097.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 05:47:21] 2025-07-27 09:46:43,207 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/6/PanDA_Pilot-6745891110/log.45758408._000097.job.log.tgz.1 /tmp/boinchome/slots/6/log.45758408._000097.job
[2025-07-27 05:47:21] 2025-07-27 09:46:43,225 | INFO     | adding to output.list: log.45758408._000097.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9f/2f/log.45758408._000097.job.log.tg
[2025-07-27 05:47:21] 2025-07-27 09:46:43,226 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 05:47:21] 2025-07-27 09:46:43,226 | INFO     | summary of transferred files:
[2025-07-27 05:47:21] 2025-07-27 09:46:43,226 | INFO     |  -- lfn=log.45758408._000097.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 05:47:21] 2025-07-27 09:46:43,226 | INFO     | stage-out finished correctly
[2025-07-27 05:47:21] 2025-07-27 09:46:44,743 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 05:47:21] 2025-07-27 09:46:45,586 | INFO     | job 6745891110 has state=finished
[2025-07-27 05:47:21] 2025-07-27 09:46:45,587 | INFO     | preparing for final server update for job 6745891110 in state='finished'
[2025-07-27 05:47:21] 2025-07-27 09:46:45,587 | INFO     | this job has now completed (state=finished)
[2025-07-27 05:47:21] 2025-07-27 09:46:45,587 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 05:47:21] 2025-07-27 09:46:45,587 | INFO     | log transfer has been attempted: DONE
[2025-07-27 05:47:21] 2025-07-27 09:46:45,587 | INFO     | job 6745891110 has finished - writing final server update
[2025-07-27 05:47:21] 2025-07-27 09:46:45,587 | INFO     | total number of processed events: 400 (read)
[2025-07-27 05:47:21] 2025-07-27 09:46:45,588 | INFO     | executing command: lscpu
[2025-07-27 05:47:21] 2025-07-27 09:46:45,643 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 05:47:21] 2025-07-27 09:46:48,791 | WARNING  | process 2721697 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 05:47:21] 2025-07-27 09:46:48,792 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6745891110/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 05:47:21] 2025-07-27 09:46:48,792 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6745891110/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 05:47:21] 2025-07-27 09:46:49,144 | INFO     | number of running child processes to parent process 2721697: 1
[2025-07-27 05:47:21] 2025-07-27 09:46:49,144 | INFO     | maximum number of monitored processes: 6
[2025-07-27 05:47:21] 2025-07-27 09:46:49,440 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 05:47:21] 2025-07-27 09:46:49,445 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3722.7412265625026
[2025-07-27 05:47:21] 2025-07-27 09:46:49,458 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6745891110/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 05:47:21] 2025-07-27 09:46:49,459 | INFO     | extracted standard info from prmon json
[2025-07-27 05:47:21] 2025-07-27 09:46:49,459 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 05:47:21] 2025-07-27 09:46:49,459 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 05:47:21] 2025-07-27 09:46:49,459 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 05:47:21] 2025-07-27 09:46:49,459 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 05:47:21] 2025-07-27 09:46:49,460 | INFO     | fitting pss+swap vs Time
[2025-07-27 05:47:21] 2025-07-27 09:46:49,460 | INFO     | sum of square deviations: 57407588.0
[2025-07-27 05:47:21] 2025-07-27 09:46:49,460 | INFO     | sum of deviations: -582311429.0
[2025-07-27 05:47:21] 2025-07-27 09:46:49,460 | INFO     | mean x: 1753607765.0
[2025-07-27 05:47:21] 2025-07-27 09:46:49,461 | INFO     | mean y: 2525035.6842105263
[2025-07-27 05:47:21] 2025-07-27 09:46:49,461 | INFO     | -- intersect: 17790170869.936058
[2025-07-27 05:47:21] 2025-07-27 09:46:49,461 | INFO     | intersect: 17790170869.936058
[2025-07-27 05:47:21] 2025-07-27 09:46:49,461 | INFO     | chi2: 0.0014845554769368004
[2025-07-27 05:47:21] 2025-07-27 09:46:49,461 | INFO     | -- intersect: 17790170869.936058
[2025-07-27 05:47:21] 2025-07-27 09:46:49,461 | INFO     | current memory leak: -10.14 B/s (using 57 data points, chi2=0.00)
[2025-07-27 05:47:21] 2025-07-27 09:46:49,461 | INFO     | could have reported an average CPU frequency of 3749 MHz (6 samples)
[2025-07-27 05:47:21] 2025-07-27 09:46:49,461 | INFO     | ..............................
[2025-07-27 05:47:21] 2025-07-27 09:46:49,461 | INFO     | . Timing measurements:
[2025-07-27 05:47:21] 2025-07-27 09:46:49,461 | INFO     | . get job = 0 s
[2025-07-27 05:47:21] 2025-07-27 09:46:49,461 | INFO     | . initial setup = 2 s
[2025-07-27 05:47:21] 2025-07-27 09:46:49,461 | INFO     | . payload setup = 5 s
[2025-07-27 05:47:21] 2025-07-27 09:46:49,461 | INFO     | . stage-in = 0 s
[2025-07-27 05:47:21] 2025-07-27 09:46:49,461 | INFO     | . payload execution = 3850 s
[2025-07-27 05:47:21] 2025-07-27 09:46:49,461 | INFO     | . stage-out = 0 s
[2025-07-27 05:47:21] 2025-07-27 09:46:49,461 | INFO     | . log creation = 0 s
[2025-07-27 05:47:21] 2025-07-27 09:46:49,461 | INFO     | ..............................
[2025-07-27 05:47:21] 2025-07-27 09:46:49,775 | INFO     | 
[2025-07-27 05:47:21] 2025-07-27 09:46:49,775 | INFO     | job summary report
[2025-07-27 05:47:21] 2025-07-27 09:46:49,775 | INFO     | --------------------------------------------------
[2025-07-27 05:47:21] 2025-07-27 09:46:49,775 | INFO     | PanDA job id: 6745891110
[2025-07-27 05:47:21] 2025-07-27 09:46:49,775 | INFO     | task id: 45758408
[2025-07-27 05:47:21] 2025-07-27 09:46:49,775 | INFO     | errors: (none)
[2025-07-27 05:47:21] 2025-07-27 09:46:49,775 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 05:47:21] 2025-07-27 09:46:49,776 | INFO     | pilot state: finished 
[2025-07-27 05:47:21] 2025-07-27 09:46:49,776 | INFO     | transexitcode: 0
[2025-07-27 05:47:21] 2025-07-27 09:46:49,776 | INFO     | exeerrorcode: 0
[2025-07-27 05:47:21] 2025-07-27 09:46:49,776 | INFO     | exeerrordiag: 
[2025-07-27 05:47:21] 2025-07-27 09:46:49,776 | INFO     | exitcode: 0
[2025-07-27 05:47:21] 2025-07-27 09:46:49,776 | INFO     | exitmsg: OK
[2025-07-27 05:47:21] 2025-07-27 09:46:49,776 | INFO     | cpuconsumptiontime: 28999 s
[2025-07-27 05:47:21] 2025-07-27 09:46:49,776 | INFO     | nevents: 400
[2025-07-27 05:47:21] 2025-07-27 09:46:49,776 | INFO     | neventsw: 0
[2025-07-27 05:47:21] 2025-07-27 09:46:49,776 | INFO     | pid: 2721697
[2025-07-27 05:47:21] 2025-07-27 09:46:49,776 | INFO     | pgrp: 2721697
[2025-07-27 05:47:21] 2025-07-27 09:46:49,776 | INFO     | corecount: 8
[2025-07-27 05:47:21] 2025-07-27 09:46:49,776 | INFO     | event service: False
[2025-07-27 05:47:21] 2025-07-27 09:46:49,776 | INFO     | sizes: {0: 2397484, 4: 2397746, 11: 2397774, 3859: 2423671, 3860: 2432669, 3862: 2432725, 3867: 2433047}
[2025-07-27 05:47:21] 2025-07-27 09:46:49,776 | INFO     | --------------------------------------------------
[2025-07-27 05:47:21] 2025-07-27 09:46:49,776 | INFO     | 
[2025-07-27 05:47:21] 2025-07-27 09:46:49,776 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-07-27 05:47:21] 2025-07-27 09:46:49,793 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 05:47:21] 2025-07-27 09:46:49,793 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 05:47:21] 2025-07-27 09:46:49,793 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 05:47:21] 2025-07-27 09:46:49,793 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 05:47:21] 2025-07-27 09:46:49,793 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 05:47:21] 2025-07-27 09:46:49,793 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 05:47:21] 2025-07-27 09:46:49,793 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 05:47:21] 2025-07-27 09:46:49,793 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 05:47:21] 2025-07-27 09:46:49,793 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 05:47:21] 2025-07-27 09:46:49,793 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 05:47:21] 2025-07-27 09:46:49,793 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 05:47:21] 2025-07-27 09:46:49,793 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 05:47:21] 2025-07-27 09:46:49,793 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 05:47:21] 2025-07-27 09:46:49,794 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 05:47:21] 2025-07-27 09:46:49,794 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 05:47:21] 2025-07-27 09:46:49,794 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 05:47:21] 2025-07-27 09:46:49,794 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 05:47:21] 2025-07-27 09:46:49,794 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 05:47:21] 2025-07-27 09:46:49,794 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 05:47:21] 2025-07-27 09:46:49,794 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 05:47:21] 2025-07-27 09:46:49,794 | INFO     | job 6745891110 has completed (purged errors)
[2025-07-27 05:47:21] 2025-07-27 09:46:49,794 | INFO     | overall cleanup function is called
[2025-07-27 05:47:21] 2025-07-27 09:46:50,801 | INFO     | --- collectZombieJob: --- 10, [2721697]
[2025-07-27 05:47:21] 2025-07-27 09:46:50,803 | INFO     | zombie collector waiting for pid 2721697
[2025-07-27 05:47:21] 2025-07-27 09:46:50,803 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 05:47:21] 2025-07-27 09:46:50,803 | INFO     | collected zombie processes
[2025-07-27 05:47:21] 2025-07-27 09:46:50,803 | INFO     | will attempt to kill all subprocesses of pid=2721697
[2025-07-27 05:47:21] 2025-07-27 09:46:51,153 | INFO     | process IDs to be killed: [2721697] (in reverse order)
[2025-07-27 05:47:21] 2025-07-27 09:46:51,273 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 05:47:21] 2025-07-27 09:46:51,273 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 05:47:21] 2025-07-27 09:46:51,287 | INFO     | did not find any defunct processes belonging to 2721697
[2025-07-27 05:47:21] 2025-07-27 09:46:51,297 | INFO     | did not find any defunct processes belonging to 2721697
[2025-07-27 05:47:21] 2025-07-27 09:46:51,298 | INFO     | ready for new job
[2025-07-27 05:47:21] 2025-07-27 09:46:51,298 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 05:47:21] 2025-07-27 09:46:51,299 | INFO     | ***************************************
[2025-07-27 05:47:21] 2025-07-27 09:46:51,299 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 05:47:21] 2025-07-27 09:46:51,299 | INFO     | ***************************************
[2025-07-27 05:47:21] 2025-07-27 09:46:51,299 | INFO     | 
[2025-07-27 05:47:21] 2025-07-27 09:46:51,304 | INFO     | architecture information:
[2025-07-27 05:47:21] 2025-07-27 09:46:51,304 | INFO     | executing command: cat /etc/os-release
[2025-07-27 05:47:21] 2025-07-27 09:46:51,322 | INFO     | cat /etc/os-release:
[2025-07-27 05:47:21] NAME="CentOS Linux"
[2025-07-27 05:47:21] VERSION="7 (Core)"
[2025-07-27 05:47:21] ID="centos"
[2025-07-27 05:47:21] ID_LIKE="rhel fedora"
[2025-07-27 05:47:21] VERSION_ID="7"
[2025-07-27 05:47:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 05:47:21] ANSI_COLOR="0;31"
[2025-07-27 05:47:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 05:47:21] HOME_URL="https://www.centos.org/"
[2025-07-27 05:47:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 05:47:21] 
[2025-07-27 05:47:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 05:47:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 05:47:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 05:47:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 05:47:21] 
[2025-07-27 05:47:21] 2025-07-27 09:46:51,323 | INFO     | ***************************************
[2025-07-27 05:47:21] 2025-07-27 09:46:51,826 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-07-27 05:47:21] 2025-07-27 09:46:51,844 | INFO     | sufficient remaining disk space (164568760320 B)
[2025-07-27 05:47:21] 2025-07-27 09:46:51,844 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 05:47:21] 2025-07-27 09:46:51,844 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 05:47:21] 2025-07-27 09:46:51,845 | INFO     | update_server=False
[2025-07-27 05:47:21] 2025-07-27 09:46:51,845 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 05:47:21] 2025-07-27 09:46:51,845 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 05:47:21] 2025-07-27 09:46:52,004 | INFO     | all job control threads have been joined
[2025-07-27 05:47:21] 2025-07-27 09:46:52,527 | INFO     | all data control threads have been joined
[2025-07-27 05:47:21] 2025-07-27 09:46:52,651 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 05:47:21] 2025-07-27 09:46:52,651 | INFO     | aborting loop
[2025-07-27 05:47:21] 2025-07-27 09:46:52,850 | INFO     | [job] retrieve thread has finished
[2025-07-27 05:47:21] 2025-07-27 09:46:53,009 | INFO     | [job] control thread has finished
[2025-07-27 05:47:21] 2025-07-27 09:46:53,123 | INFO     | [data] copytool_in thread has finished
[2025-07-27 05:47:21] 2025-07-27 09:46:53,162 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 05:47:21] 2025-07-27 09:46:53,348 | INFO     | all payload control threads have been joined
[2025-07-27 05:47:21] 2025-07-27 09:46:53,533 | INFO     | [data] control thread has finished
[2025-07-27 05:47:21] 2025-07-27 09:46:53,656 | INFO     | [job] job monitor thread has finished
[2025-07-27 05:47:21] 2025-07-27 09:46:53,835 | INFO     | [job] validate thread has finished
[2025-07-27 05:47:21] 2025-07-27 09:46:53,848 | INFO     | [data] copytool_out thread has finished
[2025-07-27 05:47:21] 2025-07-27 09:46:53,869 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 05:47:21] 2025-07-27 09:46:53,918 | INFO     | [payload] validate_post thread has finished
[2025-07-27 05:47:21] 2025-07-27 09:46:54,136 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 05:47:21] 2025-07-27 09:46:54,188 | INFO     | [payload] failed_post thread has finished
[2025-07-27 05:47:21] 2025-07-27 09:46:54,353 | INFO     | [payload] control thread has finished
[2025-07-27 05:47:21] 2025-07-27 09:46:54,530 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 05:47:21] 2025-07-27 09:46:55,304 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 05:47:21] 2025-07-27 09:46:55,535 | INFO     | [job] queue monitor thread has finished
[2025-07-27 05:47:21] 2025-07-27 09:46:59,309 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 05:47:21] 2025-07-27 09:47:02,858 | INFO     | job.realtimelogging is not enabled
[2025-07-27 05:47:21] 2025-07-27 09:47:03,863 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 05:47:21] 2025-07-27 09:47:04,507 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140412884604736)>', '<ExcThread(monitor, started 140412253619968)>']
[2025-07-27 05:47:21] 2025-07-27 09:47:09,529 | INFO     | all workflow threads have been joined
[2025-07-27 05:47:21] 2025-07-27 09:47:09,529 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 05:47:21] 2025-07-27 09:47:09,529 | INFO     | traces error code: 0
[2025-07-27 05:47:21] 2025-07-27 09:47:09,529 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 05:47:21] 2025-07-27 09:47:21,679 | INFO     | PID=2715257 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 05:47:21] 2025-07-27 09:47:21,680 | INFO     | .. there are 15 such processes running
[2025-07-27 05:47:21] 2025-07-27 09:47:21,680 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 05:47:21] 2025-07-27 09:47:21,680 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 05:47:21] 2025-07-27 09:47:21,680 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 05:47:21] 2025-07-27 09:47:21,680 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 05:47:21] 2025-07-27 09:47:21,680 | INFO     | [monitor] control thread has ended
[2025-07-27 05:47:21] 2025-07-27 09:47:21,763 [wrapper] ==== pilot stdout END ====
[2025-07-27 05:47:21] 2025-07-27 09:47:21,767 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 05:47:21] 2025-07-27 09:47:21,770 [wrapper] pilotpid: 2715257
[2025-07-27 05:47:21] 2025-07-27 09:47:21,773 [wrapper] Pilot exit status: 0
[2025-07-27 05:47:21] 2025-07-27 09:47:21,782 [wrapper] pandaids: 6745891110
[2025-07-27 05:47:21] 2025-07-27 09:47:21,868 [wrapper] cleanup supervisor_pilot 3004158 2715258
[2025-07-27 05:47:21] 2025-07-27 09:47:21,872 [wrapper] Test setup, not cleaning
[2025-07-27 05:47:21] 2025-07-27 09:47:21,875 [wrapper] apfmon messages muted
[2025-07-27 05:47:21] 2025-07-27 09:47:21,877 [wrapper] ==== wrapper stdout END ====
[2025-07-27 05:47:21] 2025-07-27 09:47:21,880 [wrapper] ==== wrapper stderr END ====
[2025-07-27 05:47:21]  *** Error codes and diagnostics ***
[2025-07-27 05:47:21]     "exeErrorCode": 0,
[2025-07-27 05:47:21]     "exeErrorDiag": "",
[2025-07-27 05:47:21]     "pilotErrorCode": 0,
[2025-07-27 05:47:21]     "pilotErrorDiag": "",
[2025-07-27 05:47:21]  *** Listing of results directory ***
[2025-07-27 05:47:21] total 407856
[2025-07-27 05:47:21] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 19:07 pilot3.tar.gz
[2025-07-27 05:47:21] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 19:23 queuedata.json
[2025-07-27 05:47:21] -rwx------. 1 boincer umatlas     36292 Jul 26 19:24 runpilot2-wrapper.sh
[2025-07-27 05:47:21] -rw-r--r--. 1 boincer umatlas       100 Jul 27 04:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 05:47:21] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 04:41 run_atlas
[2025-07-27 05:47:21] -rw-r--r--. 1 boincer umatlas       105 Jul 27 04:41 job.xml
[2025-07-27 05:47:21] -rw-r--r--. 2 boincer umatlas 241558024 Jul 27 04:41 EVNT.45758406._000004.pool.root.1
[2025-07-27 05:47:21] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 04:41 start_atlas.sh
[2025-07-27 05:47:21] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 04:41 shared
[2025-07-27 05:47:21] -rw-r--r--. 2 boincer umatlas    542888 Jul 27 04:41 input.tar.gz
[2025-07-27 05:47:21] -rw-r--r--. 1 boincer umatlas         0 Jul 27 04:41 boinc_lockfile
[2025-07-27 05:47:21] -rw-r--r--. 1 boincer umatlas      2577 Jul 27 04:41 pandaJob.out
[2025-07-27 05:47:21] -rw-------. 1 boincer umatlas    980109 Jul 27 04:42 agis_schedconf.cvmfs.json
[2025-07-27 05:47:21] -rw-------. 1 boincer umatlas   1593052 Jul 27 04:42 agis_ddmendpoints.agis.ALL.json
[2025-07-27 05:47:21] drwx------. 4 boincer umatlas      4096 Jul 27 04:42 pilot3
[2025-07-27 05:47:21] -rw-r--r--. 1 boincer umatlas      7174 Jul 27 05:38 init_data.xml
[2025-07-27 05:47:21] -rw-------. 1 boincer umatlas 170819355 Jul 27 05:46 HITS.45758408._000097.pool.root.1
[2025-07-27 05:47:21] -rw-r--r--. 1 boincer umatlas       529 Jul 27 05:46 boinc_task_state.xml
[2025-07-27 05:47:21] -rw-------. 1 boincer umatlas      1026 Jul 27 05:46 memory_monitor_summary.json
[2025-07-27 05:47:21] -rw-------. 1 boincer umatlas    306516 Jul 27 05:46 log.45758408._000097.job.log.tgz.1
[2025-07-27 05:47:21] -rw-------. 1 boincer umatlas      7753 Jul 27 05:46 heartbeat.json
[2025-07-27 05:47:21] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 05:47 boinc_mmap_file
[2025-07-27 05:47:21] -rw-r--r--. 1 boincer umatlas        27 Jul 27 05:47 wrapper_checkpoint.txt
[2025-07-27 05:47:21] -rw-------. 1 boincer umatlas        95 Jul 27 05:47 pilot_heartbeat.json
[2025-07-27 05:47:21] -rw-------. 1 boincer umatlas       823 Jul 27 05:47 pilotlog.txt
[2025-07-27 05:47:21] -rw-------. 1 boincer umatlas    390195 Jul 27 05:47 log.45758408._000097.job.log.1
[2025-07-27 05:47:21] -rw-------. 1 boincer umatlas       357 Jul 27 05:47 output.list
[2025-07-27 05:47:21] -rw-r--r--. 1 boincer umatlas       620 Jul 27 05:47 runtime_log
[2025-07-27 05:47:21] -rw-------. 1 boincer umatlas    716800 Jul 27 05:47 result.tar.gz
[2025-07-27 05:47:21] -rw-------. 1 boincer umatlas       651 Jul 27 05:47 2NfLDmjQ3z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmsTTLDmAACfbm.diag
[2025-07-27 05:47:21] -rw-r--r--. 1 boincer umatlas      8660 Jul 27 05:47 runtime_log.err
[2025-07-27 05:47:21] -rw-r--r--. 1 boincer umatlas     21603 Jul 27 05:47 stderr.txt
[2025-07-27 05:47:21] HITS file was successfully produced:
[2025-07-27 05:47:21] -rw-------. 1 boincer umatlas 170819355 Jul 27 05:46 shared/HITS.pool.root.1
[2025-07-27 05:47:21]  *** Contents of shared directory: ***
[2025-07-27 05:47:21] total 403968
[2025-07-27 05:47:21] -rw-r--r--. 2 boincer umatlas 241558024 Jul 27 04:41 ATLAS.root_0
[2025-07-27 05:47:21] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 04:41 start_atlas.sh
[2025-07-27 05:47:21] -rw-r--r--. 2 boincer umatlas    542888 Jul 27 04:41 input.tar.gz
[2025-07-27 05:47:21] -rw-------. 1 boincer umatlas 170819355 Jul 27 05:46 HITS.pool.root.1
[2025-07-27 05:47:21] -rw-------. 1 boincer umatlas    716800 Jul 27 05:47 result.tar.gz
05:47:23 (2710730): run_atlas exited; CPU time 29092.867146
05:47:23 (2710730): called boinc_finish(0)

</stderr_txt>
]]>

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