Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:01:37 (1097602): wrapper (7.7.26015): starting
00:01:37 (1097602): wrapper: running run_atlas (--nthreads 12)
[2025-07-28 00:01:37] Arguments: --nthreads 12
[2025-07-28 00:01:37] Threads: 12
[2025-07-28 00:01:37] Checking for CVMFS
[2025-07-28 00:01:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 00:01:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 00:01:37] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 00:01:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 00:01:37] 2.13.1.0 1072336 8535 80540 148825 0 57 2195898 4097024 0 130560 0 10512772 99.988 312949 7532 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://188.184.28.244:3128 1
[2025-07-28 00:01:37] CVMFS is ok
[2025-07-28 00:01:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 00:01:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 00:01:37] Further information can be found at the LHC@home message board.
[2025-07-28 00:01:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 00:01:37] Checking for apptainer binary...
[2025-07-28 00:01:37] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2025-07-28 00:01:37] apptainer is not installed, using version from CVMFS
[2025-07-28 00:01:37] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 00:01:38] pckelar2.cern.ch
[2025-07-28 00:01:38] apptainer works
[2025-07-28 00:01:38] Set ATHENA_PROC_NUMBER=12
[2025-07-28 00:01:38] Set ATHENA_CORE_NUMBER=12
[2025-07-28 00:01:38] Starting ATLAS job with PandaID=6745939000
[2025-07-28 00:01:38] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 00:56:59]  *** The last 200 lines of the pilot log: ***
[2025-07-28 00:56:59]  lfn=log.45758392._000053.job.log.tgz.1
[2025-07-28 00:56:59]  mtime=0
[2025-07-28 00:56:59]  protocol_id=None
[2025-07-28 00:56:59]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 00:56:59]  replicas=None
[2025-07-28 00:56:59]  scope=mc23_13p6TeV
[2025-07-28 00:56:59]  status=None
[2025-07-28 00:56:59]  status_code=0
[2025-07-28 00:56:59]  storage_token=
[2025-07-28 00:56:59]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-6745939000/log.45758392._000053.job.log.tgz.1
[2025-07-28 00:56:59]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/29/17/log.45758392._000053.job.log.tgz.1
[2025-07-28 00:56:59]  workdir=None
[2025-07-28 00:56:59] ]
[2025-07-28 00:56:59] 2025-07-27 22:56:17,856 | INFO     | transferring file log.45758392._000053.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6745939000/log.45758392._000053.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-07-28 00:56:59] 2025-07-27 22:56:17,857 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6745939000/log.45758392._000053.job.log.tgz.1 /var/lib/boinc/slots/0/log.45758392._000053.job
[2025-07-28 00:56:59] 2025-07-27 22:56:17,868 | INFO     | adding to output.list: log.45758392._000053.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/29/17/log.45758392._000053.job.log.tg
[2025-07-28 00:56:59] 2025-07-27 22:56:17,868 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 00:56:59] 2025-07-27 22:56:17,868 | INFO     | summary of transferred files:
[2025-07-28 00:56:59] 2025-07-27 22:56:17,868 | INFO     |  -- lfn=log.45758392._000053.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 00:56:59] 2025-07-27 22:56:17,868 | INFO     | stage-out finished correctly
[2025-07-28 00:56:59] 2025-07-27 22:56:20,199 | INFO     | monitor loop #255: job 0:6745939000 is in state 'finished'
[2025-07-28 00:56:59] 2025-07-27 22:56:20,199 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 00:56:59] 2025-07-27 22:56:20,453 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 00:56:59] 2025-07-27 22:56:22,702 | INFO     | monitor loop #256: job 0:6745939000 is in state 'finished'
[2025-07-28 00:56:59] 2025-07-27 22:56:22,702 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 00:56:59] 2025-07-27 22:56:23,488 | INFO     | job 6745939000 has state=finished
[2025-07-28 00:56:59] 2025-07-27 22:56:23,488 | INFO     | preparing for final server update for job 6745939000 in state='finished'
[2025-07-28 00:56:59] 2025-07-27 22:56:23,488 | INFO     | this job has now completed (state=finished)
[2025-07-28 00:56:59] 2025-07-27 22:56:23,489 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 00:56:59] 2025-07-27 22:56:23,489 | INFO     | log transfer has been attempted: DONE
[2025-07-28 00:56:59] 2025-07-27 22:56:23,489 | INFO     | job 6745939000 has finished - writing final server update
[2025-07-28 00:56:59] 2025-07-27 22:56:23,489 | INFO     | total number of processed events: 400 (read)
[2025-07-28 00:56:59] 2025-07-27 22:56:23,490 | INFO     | executing command: lscpu
[2025-07-28 00:56:59] 2025-07-27 22:56:23,511 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 00:56:59] 2025-07-27 22:56:24,830 | INFO     | PID=1101365 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 00:56:59] 2025-07-27 22:56:25,205 | INFO     | monitor loop #257: job 0:6745939000 is in state 'finished'
[2025-07-28 00:56:59] 2025-07-27 22:56:25,206 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 00:56:59] 2025-07-27 22:56:27,527 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-28 00:56:59] 2025-07-27 22:56:27,529 | INFO     | found 20 cores (10 cores per socket, 2 sockets) , CPU MHz: 2766.9013999999997
[2025-07-28 00:56:59] 2025-07-27 22:56:27,531 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6745939000/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 00:56:59] 2025-07-27 22:56:27,532 | INFO     | extracted standard info from prmon json
[2025-07-28 00:56:59] 2025-07-27 22:56:27,532 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 00:56:59] 2025-07-27 22:56:27,532 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 00:56:59] 2025-07-27 22:56:27,532 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 00:56:59] 2025-07-27 22:56:27,532 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 00:56:59] 2025-07-27 22:56:27,533 | INFO     | fitting pss+swap vs Time
[2025-07-28 00:56:59] 2025-07-27 22:56:27,533 | INFO     | sum of square deviations: 32179208.0
[2025-07-28 00:56:59] 2025-07-27 22:56:27,533 | INFO     | sum of deviations: 791111562.0
[2025-07-28 00:56:59] 2025-07-27 22:56:27,533 | INFO     | mean x: 1753655435.0
[2025-07-28 00:56:59] 2025-07-27 22:56:27,533 | INFO     | mean y: 2766163.7021276597
[2025-07-28 00:56:59] 2025-07-27 22:56:27,533 | INFO     | -- intersect: -43110075221.10261
[2025-07-28 00:56:59] 2025-07-27 22:56:27,534 | INFO     | intersect: -43110075221.10261
[2025-07-28 00:56:59] 2025-07-27 22:56:27,534 | INFO     | chi2: 0.0005287820191638474
[2025-07-28 00:56:59] 2025-07-27 22:56:27,534 | INFO     | -- intersect: -43110075221.10261
[2025-07-28 00:56:59] 2025-07-27 22:56:27,534 | INFO     | current memory leak: 24.58 B/s (using 47 data points, chi2=0.00)
[2025-07-28 00:56:59] 2025-07-27 22:56:27,534 | INFO     | could have reported an average CPU frequency of 2562 MHz (5 samples)
[2025-07-28 00:56:59] 2025-07-27 22:56:27,534 | INFO     | ..............................
[2025-07-28 00:56:59] 2025-07-27 22:56:27,534 | INFO     | . Timing measurements:
[2025-07-28 00:56:59] 2025-07-27 22:56:27,534 | INFO     | . get job = 0 s
[2025-07-28 00:56:59] 2025-07-27 22:56:27,534 | INFO     | . initial setup = 1 s
[2025-07-28 00:56:59] 2025-07-27 22:56:27,534 | INFO     | . payload setup = 5 s
[2025-07-28 00:56:59] 2025-07-27 22:56:27,534 | INFO     | . stage-in = 0 s
[2025-07-28 00:56:59] 2025-07-27 22:56:27,534 | INFO     | . payload execution = 3249 s
[2025-07-28 00:56:59] 2025-07-27 22:56:27,534 | INFO     | . stage-out = 0 s
[2025-07-28 00:56:59] 2025-07-27 22:56:27,534 | INFO     | . log creation = 0 s
[2025-07-28 00:56:59] 2025-07-27 22:56:27,534 | INFO     | ..............................
[2025-07-28 00:56:59] 2025-07-27 22:56:27,581 | INFO     | 
[2025-07-28 00:56:59] 2025-07-27 22:56:27,581 | INFO     | job summary report
[2025-07-28 00:56:59] 2025-07-27 22:56:27,581 | INFO     | --------------------------------------------------
[2025-07-28 00:56:59] 2025-07-27 22:56:27,581 | INFO     | PanDA job id: 6745939000
[2025-07-28 00:56:59] 2025-07-27 22:56:27,581 | INFO     | task id: 45758392
[2025-07-28 00:56:59] 2025-07-27 22:56:27,581 | INFO     | errors: (none)
[2025-07-28 00:56:59] 2025-07-27 22:56:27,581 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 00:56:59] 2025-07-27 22:56:27,581 | INFO     | pilot state: finished 
[2025-07-28 00:56:59] 2025-07-27 22:56:27,581 | INFO     | transexitcode: 0
[2025-07-28 00:56:59] 2025-07-27 22:56:27,581 | INFO     | exeerrorcode: 0
[2025-07-28 00:56:59] 2025-07-27 22:56:27,581 | INFO     | exeerrordiag: 
[2025-07-28 00:56:59] 2025-07-27 22:56:27,581 | INFO     | exitcode: 0
[2025-07-28 00:56:59] 2025-07-27 22:56:27,581 | INFO     | exitmsg: OK
[2025-07-28 00:56:59] 2025-07-27 22:56:27,582 | INFO     | cpuconsumptiontime: 35610 s
[2025-07-28 00:56:59] 2025-07-27 22:56:27,582 | INFO     | nevents: 400
[2025-07-28 00:56:59] 2025-07-27 22:56:27,582 | INFO     | neventsw: 0
[2025-07-28 00:56:59] 2025-07-27 22:56:27,582 | INFO     | pid: 1108617
[2025-07-28 00:56:59] 2025-07-27 22:56:27,582 | INFO     | pgrp: 1108617
[2025-07-28 00:56:59] 2025-07-27 22:56:27,582 | INFO     | corecount: 12
[2025-07-28 00:56:59] 2025-07-27 22:56:27,582 | INFO     | event service: False
[2025-07-28 00:56:59] 2025-07-27 22:56:27,582 | INFO     | sizes: {0: 2397461, 3: 2397723, 11: 2397751, 3259: 2423381, 3260: 2432379, 3262: 2432435, 3269: 2432789}
[2025-07-28 00:56:59] 2025-07-27 22:56:27,582 | INFO     | --------------------------------------------------
[2025-07-28 00:56:59] 2025-07-27 22:56:27,582 | INFO     | 
[2025-07-28 00:56:59] 2025-07-27 22:56:27,582 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-07-28 00:56:59] 2025-07-27 22:56:27,595 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 00:56:59] 2025-07-27 22:56:27,595 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 00:56:59] 2025-07-27 22:56:27,595 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 00:56:59] 2025-07-27 22:56:27,595 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 00:56:59] 2025-07-27 22:56:27,595 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 00:56:59] 2025-07-27 22:56:27,595 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 00:56:59] 2025-07-27 22:56:27,595 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 00:56:59] 2025-07-27 22:56:27,595 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 00:56:59] 2025-07-27 22:56:27,595 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 00:56:59] 2025-07-27 22:56:27,595 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 00:56:59] 2025-07-27 22:56:27,595 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 00:56:59] 2025-07-27 22:56:27,595 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 00:56:59] 2025-07-27 22:56:27,595 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 00:56:59] 2025-07-27 22:56:27,596 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 00:56:59] 2025-07-27 22:56:27,596 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 00:56:59] 2025-07-27 22:56:27,596 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 00:56:59] 2025-07-27 22:56:27,596 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 00:56:59] 2025-07-27 22:56:27,596 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 00:56:59] 2025-07-27 22:56:27,596 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 00:56:59] 2025-07-27 22:56:27,596 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 00:56:59] 2025-07-27 22:56:27,596 | INFO     | job 6745939000 has completed (purged errors)
[2025-07-28 00:56:59] 2025-07-27 22:56:27,596 | INFO     | overall cleanup function is called
[2025-07-28 00:56:59] 2025-07-27 22:56:28,603 | INFO     | --- collectZombieJob: --- 10, [1108617]
[2025-07-28 00:56:59] 2025-07-27 22:56:28,603 | INFO     | zombie collector waiting for pid 1108617
[2025-07-28 00:56:59] 2025-07-27 22:56:28,603 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 00:56:59] 2025-07-27 22:56:28,603 | INFO     | collected zombie processes
[2025-07-28 00:56:59] 2025-07-27 22:56:28,603 | INFO     | will attempt to kill all subprocesses of pid=1108617
[2025-07-28 00:56:59] 2025-07-27 22:56:28,681 | INFO     | process IDs to be killed: [1108617] (in reverse order)
[2025-07-28 00:56:59] 2025-07-27 22:56:28,710 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 00:56:59] 2025-07-27 22:56:28,710 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 00:56:59] 2025-07-27 22:56:28,712 | INFO     | did not find any defunct processes belonging to 1108617
[2025-07-28 00:56:59] 2025-07-27 22:56:28,713 | INFO     | did not find any defunct processes belonging to 1108617
[2025-07-28 00:56:59] 2025-07-27 22:56:28,713 | INFO     | ready for new job
[2025-07-28 00:56:59] 2025-07-27 22:56:28,714 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 00:56:59] 2025-07-27 22:56:28,715 | INFO     | ***************************************
[2025-07-28 00:56:59] 2025-07-27 22:56:28,715 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 00:56:59] 2025-07-27 22:56:28,715 | INFO     | ***************************************
[2025-07-28 00:56:59] 2025-07-27 22:56:28,715 | INFO     | 
[2025-07-28 00:56:59] 2025-07-27 22:56:28,716 | INFO     | architecture information:
[2025-07-28 00:56:59] 2025-07-27 22:56:28,716 | INFO     | executing command: cat /etc/os-release
[2025-07-28 00:56:59] 2025-07-27 22:56:28,724 | INFO     | cat /etc/os-release:
[2025-07-28 00:56:59] NAME="CentOS Linux"
[2025-07-28 00:56:59] VERSION="7 (Core)"
[2025-07-28 00:56:59] ID="centos"
[2025-07-28 00:56:59] ID_LIKE="rhel fedora"
[2025-07-28 00:56:59] VERSION_ID="7"
[2025-07-28 00:56:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 00:56:59] ANSI_COLOR="0;31"
[2025-07-28 00:56:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 00:56:59] HOME_URL="https://www.centos.org/"
[2025-07-28 00:56:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 00:56:59] 
[2025-07-28 00:56:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 00:56:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 00:56:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 00:56:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 00:56:59] 
[2025-07-28 00:56:59] 2025-07-27 22:56:28,725 | INFO     | ***************************************
[2025-07-28 00:56:59] 2025-07-27 22:56:29,228 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-07-28 00:56:59] 2025-07-27 22:56:29,239 | INFO     | sufficient remaining disk space (232822669312 B)
[2025-07-28 00:56:59] 2025-07-27 22:56:29,239 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 00:56:59] 2025-07-27 22:56:29,239 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 00:56:59] 2025-07-27 22:56:29,239 | INFO     | update_server=False
[2025-07-28 00:56:59] 2025-07-27 22:56:29,239 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 00:56:59] 2025-07-27 22:56:29,240 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 00:56:59] 2025-07-27 22:56:29,240 | INFO     | aborting loop
[2025-07-28 00:56:59] 2025-07-27 22:56:29,240 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 00:56:59] 2025-07-27 22:56:29,240 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 00:56:59] 2025-07-27 22:56:30,210 | INFO     | all payload control threads have been joined
[2025-07-28 00:56:59] 2025-07-27 22:56:30,216 | INFO     | all data control threads have been joined
[2025-07-28 00:56:59] 2025-07-27 22:56:30,245 | INFO     | [job] retrieve thread has finished
[2025-07-28 00:56:59] 2025-07-27 22:56:30,245 | INFO     | [job] job monitor thread has finished
[2025-07-28 00:56:59] 2025-07-27 22:56:30,246 | INFO     | [job] queue monitor thread has finished
[2025-07-28 00:56:59] 2025-07-27 22:56:30,434 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 00:56:59] 2025-07-27 22:56:30,611 | INFO     | [job] validate thread has finished
[2025-07-28 00:56:59] 2025-07-27 22:56:30,618 | INFO     | all job control threads have been joined
[2025-07-28 00:56:59] 2025-07-27 22:56:30,729 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 00:56:59] 2025-07-27 22:56:30,966 | INFO     | [data] copytool_in thread has finished
[2025-07-28 00:56:59] 2025-07-27 22:56:31,005 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 00:56:59] 2025-07-27 22:56:31,010 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 00:56:59] 2025-07-27 22:56:31,215 | INFO     | [payload] control thread has finished
[2025-07-28 00:56:59] 2025-07-27 22:56:31,220 | INFO     | [data] control thread has finished
[2025-07-28 00:56:59] 2025-07-27 22:56:31,246 | INFO     | [data] copytool_out thread has finished
[2025-07-28 00:56:59] 2025-07-27 22:56:31,280 | INFO     | [payload] validate_post thread has finished
[2025-07-28 00:56:59] 2025-07-27 22:56:31,623 | INFO     | [job] control thread has finished
[2025-07-28 00:56:59] 2025-07-27 22:56:31,845 | INFO     | [payload] failed_post thread has finished
[2025-07-28 00:56:59] 2025-07-27 22:56:35,011 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 00:56:59] 2025-07-27 22:56:40,226 | INFO     | job.realtimelogging is not enabled
[2025-07-28 00:56:59] 2025-07-27 22:56:41,231 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 00:56:59] 2025-07-27 22:56:41,794 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140569000630080)>', '<ExcThread(monitor, started 140568592094976)>']
[2025-07-28 00:56:59] 2025-07-27 22:56:46,819 | INFO     | all workflow threads have been joined
[2025-07-28 00:56:59] 2025-07-27 22:56:46,819 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 00:56:59] 2025-07-27 22:56:46,819 | INFO     | traces error code: 0
[2025-07-28 00:56:59] 2025-07-27 22:56:46,819 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 00:56:59] 2025-07-27 22:56:59,017 | INFO     | PID=1101365 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 00:56:59] 2025-07-27 22:56:59,018 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 00:56:59] 2025-07-27 22:56:59,018 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 00:56:59] 2025-07-27 22:56:59,018 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 00:56:59] 2025-07-27 22:56:59,018 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 00:56:59] 2025-07-27 22:56:59,018 | INFO     | [monitor] control thread has ended
[2025-07-28 00:56:59] 2025-07-27 22:56:59,088 [wrapper] ==== pilot stdout END ====
[2025-07-28 00:56:59] 2025-07-27 22:56:59,090 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 00:56:59] 2025-07-27 22:56:59,092 [wrapper] pilotpid: 1101365
[2025-07-28 00:56:59] 2025-07-27 22:56:59,094 [wrapper] Pilot exit status: 0
[2025-07-28 00:56:59] 2025-07-27 22:56:59,103 [wrapper] pandaids: 6745939000
[2025-07-28 00:56:59] 2025-07-27 22:56:59,123 [wrapper] cleanup supervisor_pilot 1121290 1101366
[2025-07-28 00:56:59] 2025-07-27 22:56:59,126 [wrapper] Test setup, not cleaning
[2025-07-28 00:56:59] 2025-07-27 22:56:59,128 [wrapper] apfmon messages muted
[2025-07-28 00:56:59] 2025-07-27 22:56:59,130 [wrapper] ==== wrapper stdout END ====
[2025-07-28 00:56:59] 2025-07-27 22:56:59,132 [wrapper] ==== wrapper stderr END ====
[2025-07-28 00:56:59]  *** Error codes and diagnostics ***
[2025-07-28 00:56:59]     "exeErrorCode": 0,
[2025-07-28 00:56:59]     "exeErrorDiag": "",
[2025-07-28 00:56:59]     "pilotErrorCode": 0,
[2025-07-28 00:56:59]     "pilotErrorDiag": "",
[2025-07-28 00:56:59]  *** Listing of results directory ***
[2025-07-28 00:56:59] total 407440
[2025-07-28 00:56:59] -rw-r--r-- 1 boinc boinc    530466 Jul 27 02:36 pilot3.tar.gz
[2025-07-28 00:56:59] -rwx------ 1 boinc boinc     36292 Jul 27 03:08 runpilot2-wrapper.sh
[2025-07-28 00:56:59] -rw-r--r-- 1 boinc boinc      5112 Jul 27 03:08 queuedata.json
[2025-07-28 00:56:59] -rw-r--r-- 1 boinc boinc       100 Jul 28 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 00:56:59] -rwxr-xr-x 1 boinc boinc      7986 Jul 28 00:01 run_atlas
[2025-07-28 00:56:59] -rw-r--r-- 1 boinc boinc       105 Jul 28 00:01 job.xml
[2025-07-28 00:56:59] -rw-r--r-- 2 boinc boinc     15095 Jul 28 00:01 start_atlas.sh
[2025-07-28 00:56:59] drwxrwx--x 2 boinc boinc        68 Jul 28 00:01 shared
[2025-07-28 00:56:59] -rw-r--r-- 2 boinc boinc    542881 Jul 28 00:01 input.tar.gz
[2025-07-28 00:56:59] -rw-r--r-- 1 boinc boinc      6471 Jul 28 00:01 init_data.xml
[2025-07-28 00:56:59] -rw-r--r-- 2 boinc boinc 236631228 Jul 28 00:01 EVNT.45758390._000003.pool.root.1
[2025-07-28 00:56:59] -rw-r--r-- 1 boinc boinc         0 Jul 28 00:01 boinc_lockfile
[2025-07-28 00:56:59] -rw-r--r-- 1 boinc boinc      2555 Jul 28 00:01 pandaJob.out
[2025-07-28 00:56:59] -rw------- 1 boinc boinc    980117 Jul 28 00:01 agis_schedconf.cvmfs.json
[2025-07-28 00:56:59] -rw------- 1 boinc boinc   1593052 Jul 28 00:01 agis_ddmendpoints.agis.ALL.json
[2025-07-28 00:56:59] drwx------ 4 boinc boinc      4096 Jul 28 00:01 pilot3
[2025-07-28 00:56:59] -rw------- 1 boinc boinc 175386502 Jul 28 00:55 HITS.45758392._000053.pool.root.1
[2025-07-28 00:56:59] -rw-r--r-- 1 boinc boinc       529 Jul 28 00:56 boinc_task_state.xml
[2025-07-28 00:56:59] -rw------- 1 boinc boinc        95 Jul 28 00:56 pilot_heartbeat.json
[2025-07-28 00:56:59] -rw------- 1 boinc boinc      1023 Jul 28 00:56 memory_monitor_summary.json
[2025-07-28 00:56:59] -rw------- 1 boinc boinc    336083 Jul 28 00:56 log.45758392._000053.job.log.tgz.1
[2025-07-28 00:56:59] -rw------- 1 boinc boinc      7782 Jul 28 00:56 heartbeat.json
[2025-07-28 00:56:59] -rw-r--r-- 1 boinc boinc        27 Jul 28 00:56 wrapper_checkpoint.txt
[2025-07-28 00:56:59] -rw-r--r-- 1 boinc boinc      8192 Jul 28 00:56 boinc_mmap_file
[2025-07-28 00:56:59] -rw------- 1 boinc boinc       747 Jul 28 00:56 pilotlog.txt
[2025-07-28 00:56:59] -rw------- 1 boinc boinc    334857 Jul 28 00:56 log.45758392._000053.job.log.1
[2025-07-28 00:56:59] -rw------- 1 boinc boinc       357 Jul 28 00:56 output.list
[2025-07-28 00:56:59] -rw-r--r-- 1 boinc boinc       620 Jul 28 00:56 runtime_log
[2025-07-28 00:56:59] -rw------- 1 boinc boinc    686080 Jul 28 00:56 result.tar.gz
[2025-07-28 00:56:59] -rw------- 1 boinc boinc       654 Jul 28 00:56 wX8NDmu34z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmilTLDmrJ4IVn.diag
[2025-07-28 00:56:59] -rw-r--r-- 1 boinc boinc      8684 Jul 28 00:56 runtime_log.err
[2025-07-28 00:56:59] -rw-r--r-- 1 boinc boinc     21873 Jul 28 00:56 stderr.txt
[2025-07-28 00:56:59] HITS file was successfully produced:
[2025-07-28 00:56:59] -rw------- 1 boinc boinc 175386502 Jul 28 00:55 shared/HITS.pool.root.1
[2025-07-28 00:56:59]  *** Contents of shared directory: ***
[2025-07-28 00:56:59] total 403584
[2025-07-28 00:56:59] -rw-r--r-- 2 boinc boinc     15095 Jul 28 00:01 start_atlas.sh
[2025-07-28 00:56:59] -rw-r--r-- 2 boinc boinc    542881 Jul 28 00:01 input.tar.gz
[2025-07-28 00:56:59] -rw-r--r-- 2 boinc boinc 236631228 Jul 28 00:01 ATLAS.root_0
[2025-07-28 00:56:59] -rw------- 1 boinc boinc 175386502 Jul 28 00:55 HITS.pool.root.1
[2025-07-28 00:56:59] -rw------- 1 boinc boinc    686080 Jul 28 00:56 result.tar.gz
00:57:00 (1097602): run_atlas exited; CPU time 35625.277594
00:57:00 (1097602): called boinc_finish(0)

</stderr_txt>
]]>

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