Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:50:37 (3879965): wrapper (7.7.26015): starting
22:50:37 (3879965): wrapper: running run_atlas (--nthreads 3)
[2025-07-27 22:50:37] Arguments: --nthreads 3
[2025-07-27 22:50:37] Threads: 3
[2025-07-27 22:50:37] Checking for CVMFS
[2025-07-27 22:50:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 22:50:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 22:50:37] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 22:50:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 22:50:37] 2.9.2.0 1693042 8478 85896 148823 0 57 11731497 36864001 0 130560 0 5770295 99.989 310442 1962 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-07-27 22:50:37] CVMFS is ok
[2025-07-27 22:50:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 22:50:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 22:50:37] Further information can be found at the LHC@home message board.
[2025-07-27 22:50:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 22:50:37] Checking for apptainer binary...
[2025-07-27 22:50:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 22:50:37] Running /usr/bin/apptainer --version
[2025-07-27 22:50:37] apptainer version 1.4.1-1.1
[2025-07-27 22:50:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 22:50:37] magicA250a
[2025-07-27 22:50:37] apptainer works
[2025-07-27 22:50:37] Set ATHENA_PROC_NUMBER=3
[2025-07-27 22:50:37] Set ATHENA_CORE_NUMBER=3
[2025-07-27 22:50:37] Starting ATLAS job with PandaID=6745068683
[2025-07-27 22:50:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 00:21:48]  *** The last 200 lines of the pilot log: ***
[2025-07-28 00:21:48] 2025-07-27 22:21:10,519 | INFO     | maximum number of monitored processes: 6
[2025-07-28 00:21:48] 2025-07-27 22:21:10,519 | INFO     | will send heartbeat for job in 'finished' state
[2025-07-28 00:21:48] 2025-07-27 22:21:10,519 | INFO     | note: will only send 'running' state to server to prevent sending any final state too early
[2025-07-28 00:21:48] 2025-07-27 22:21:10,519 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 00:21:48] 2025-07-27 22:21:10,519 | INFO     | log transfer has been attempted: DONE
[2025-07-28 00:21:48] 2025-07-27 22:21:10,519 | INFO     | job 6745068683 has state 'running' - writing heartbeat
[2025-07-28 00:21:48] 2025-07-27 22:21:10,519 | INFO     | total number of processed events: 400 (read)
[2025-07-28 00:21:48] 2025-07-27 22:21:10,520 | INFO     | executing command: lscpu
[2025-07-28 00:21:48] 2025-07-27 22:21:10,533 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 00:21:48] 2025-07-27 22:21:11,570 | INFO     | job 6745068683 has state=finished
[2025-07-28 00:21:48] 2025-07-27 22:21:11,570 | INFO     | preparing for final server update for job 6745068683 in state='finished'
[2025-07-28 00:21:48] 2025-07-27 22:21:11,571 | INFO     | this job has now completed (state=finished)
[2025-07-28 00:21:48] 2025-07-27 22:21:11,571 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 00:21:48] 2025-07-27 22:21:11,571 | INFO     | log transfer has been attempted: DONE
[2025-07-28 00:21:48] 2025-07-27 22:21:11,571 | INFO     | job 6745068683 has finished - writing final server update
[2025-07-28 00:21:48] 2025-07-27 22:21:11,571 | INFO     | total number of processed events: 400 (read)
[2025-07-28 00:21:48] 2025-07-27 22:21:11,571 | INFO     | executing command: lscpu
[2025-07-28 00:21:48] 2025-07-27 22:21:13,950 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-28 00:21:48] 2025-07-27 22:21:13,953 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3404.8813333333333
[2025-07-28 00:21:48] 2025-07-27 22:21:13,955 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6745068683/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 00:21:48] 2025-07-27 22:21:13,955 | INFO     | extracted standard info from prmon json
[2025-07-28 00:21:48] 2025-07-27 22:21:13,955 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 00:21:48] 2025-07-27 22:21:13,955 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 00:21:48] 2025-07-27 22:21:13,955 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 00:21:48] 2025-07-27 22:21:13,956 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 00:21:48] 2025-07-27 22:21:13,956 | INFO     | fitting pss+swap vs Time
[2025-07-28 00:21:48] 2025-07-27 22:21:13,956 | INFO     | sum of square deviations: 170944600.5
[2025-07-28 00:21:48] 2025-07-27 22:21:13,957 | INFO     | sum of deviations: -10029547471.0
[2025-07-28 00:21:48] 2025-07-27 22:21:13,957 | INFO     | mean x: 1753652236.5
[2025-07-28 00:21:48] 2025-07-27 22:21:13,957 | INFO     | mean y: 2413023.2926829266
[2025-07-28 00:21:48] 2025-07-27 22:21:13,957 | INFO     | -- intersect: 102891526233.99084
[2025-07-28 00:21:48] 2025-07-27 22:21:13,957 | INFO     | intersect: 102891526233.99084
[2025-07-28 00:21:48] 2025-07-27 22:21:13,957 | INFO     | chi2: 0.12878043851496915
[2025-07-28 00:21:48] 2025-07-27 22:21:13,957 | INFO     | -- intersect: 102891526233.99084
[2025-07-28 00:21:48] 2025-07-27 22:21:13,957 | INFO     | current memory leak: -58.67 B/s (using 82 data points, chi2=0.13)
[2025-07-28 00:21:48] 2025-07-27 22:21:13,957 | INFO     | could have reported an average CPU frequency of 3813 MHz (6 samples)
[2025-07-28 00:21:48] 2025-07-27 22:21:13,963 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 00:21:48] 2025-07-27 22:21:16,080 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-28 00:21:48] 2025-07-27 22:21:16,081 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3520.911083333334
[2025-07-28 00:21:48] 2025-07-27 22:21:16,082 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6745068683/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 00:21:48] 2025-07-27 22:21:16,082 | INFO     | extracted standard info from prmon json
[2025-07-28 00:21:48] 2025-07-27 22:21:16,082 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 00:21:48] 2025-07-27 22:21:16,082 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 00:21:48] 2025-07-27 22:21:16,083 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 00:21:48] 2025-07-27 22:21:16,083 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 00:21:48] 2025-07-27 22:21:16,083 | INFO     | fitting pss+swap vs Time
[2025-07-28 00:21:48] 2025-07-27 22:21:16,083 | INFO     | sum of square deviations: 170944600.5
[2025-07-28 00:21:48] 2025-07-27 22:21:16,083 | INFO     | sum of deviations: -10029547471.0
[2025-07-28 00:21:48] 2025-07-27 22:21:16,084 | INFO     | mean x: 1753652236.5
[2025-07-28 00:21:48] 2025-07-27 22:21:16,084 | INFO     | mean y: 2413023.2926829266
[2025-07-28 00:21:48] 2025-07-27 22:21:16,084 | INFO     | -- intersect: 102891526233.99084
[2025-07-28 00:21:48] 2025-07-27 22:21:16,084 | INFO     | intersect: 102891526233.99084
[2025-07-28 00:21:48] 2025-07-27 22:21:16,084 | INFO     | chi2: 0.12878043851496915
[2025-07-28 00:21:48] 2025-07-27 22:21:16,084 | INFO     | -- intersect: 102891526233.99084
[2025-07-28 00:21:48] 2025-07-27 22:21:16,084 | INFO     | current memory leak: -58.67 B/s (using 82 data points, chi2=0.13)
[2025-07-28 00:21:48] 2025-07-27 22:21:16,084 | INFO     | could have reported an average CPU frequency of 3772 MHz (7 samples)
[2025-07-28 00:21:48] 2025-07-27 22:21:16,084 | INFO     | ..............................
[2025-07-28 00:21:48] 2025-07-27 22:21:16,084 | INFO     | . Timing measurements:
[2025-07-28 00:21:48] 2025-07-27 22:21:16,084 | INFO     | . get job = 0 s
[2025-07-28 00:21:48] 2025-07-27 22:21:16,084 | INFO     | . initial setup = 1 s
[2025-07-28 00:21:48] 2025-07-27 22:21:16,084 | INFO     | . payload setup = 3 s
[2025-07-28 00:21:48] 2025-07-27 22:21:16,084 | INFO     | . stage-in = 0 s
[2025-07-28 00:21:48] 2025-07-27 22:21:16,084 | INFO     | . payload execution = 5403 s
[2025-07-28 00:21:48] 2025-07-27 22:21:16,084 | INFO     | . stage-out = 0 s
[2025-07-28 00:21:48] 2025-07-27 22:21:16,084 | INFO     | . log creation = 0 s
[2025-07-28 00:21:48] 2025-07-27 22:21:16,084 | INFO     | ..............................
[2025-07-28 00:21:48] 2025-07-27 22:21:16,115 | INFO     | 
[2025-07-28 00:21:48] 2025-07-27 22:21:16,115 | INFO     | job summary report
[2025-07-28 00:21:48] 2025-07-27 22:21:16,115 | INFO     | --------------------------------------------------
[2025-07-28 00:21:48] 2025-07-27 22:21:16,115 | INFO     | PanDA job id: 6745068683
[2025-07-28 00:21:48] 2025-07-27 22:21:16,115 | INFO     | task id: 45743349
[2025-07-28 00:21:48] 2025-07-27 22:21:16,115 | INFO     | errors: (none)
[2025-07-28 00:21:48] 2025-07-27 22:21:16,115 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 00:21:48] 2025-07-27 22:21:16,115 | INFO     | pilot state: finished 
[2025-07-28 00:21:48] 2025-07-27 22:21:16,115 | INFO     | transexitcode: 0
[2025-07-28 00:21:48] 2025-07-27 22:21:16,115 | INFO     | exeerrorcode: 0
[2025-07-28 00:21:48] 2025-07-27 22:21:16,115 | INFO     | exeerrordiag: 
[2025-07-28 00:21:48] 2025-07-27 22:21:16,115 | INFO     | exitcode: 0
[2025-07-28 00:21:48] 2025-07-27 22:21:16,115 | INFO     | exitmsg: OK
[2025-07-28 00:21:48] 2025-07-27 22:21:16,115 | INFO     | cpuconsumptiontime: 15578 s
[2025-07-28 00:21:48] 2025-07-27 22:21:16,115 | INFO     | nevents: 400
[2025-07-28 00:21:48] 2025-07-27 22:21:16,115 | INFO     | neventsw: 0
[2025-07-28 00:21:48] 2025-07-27 22:21:16,115 | INFO     | pid: 3890093
[2025-07-28 00:21:48] 2025-07-27 22:21:16,115 | INFO     | pgrp: 3890093
[2025-07-28 00:21:48] 2025-07-27 22:21:16,115 | INFO     | corecount: 3
[2025-07-28 00:21:48] 2025-07-27 22:21:16,115 | INFO     | event service: False
[2025-07-28 00:21:48] 2025-07-27 22:21:16,115 | INFO     | sizes: {0: 2397478, 3: 2397740, 11: 2397768, 5410: 2424477, 5412: 2433481, 5415: 2433537, 5421: 2433883}
[2025-07-28 00:21:48] 2025-07-27 22:21:16,115 | INFO     | --------------------------------------------------
[2025-07-28 00:21:48] 2025-07-27 22:21:16,115 | INFO     | 
[2025-07-28 00:21:48] 2025-07-27 22:21:16,115 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-07-28 00:21:48] 2025-07-27 22:21:16,125 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 00:21:48] 2025-07-27 22:21:16,126 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 00:21:48] 2025-07-27 22:21:16,126 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 00:21:48] 2025-07-27 22:21:16,126 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 00:21:48] 2025-07-27 22:21:16,126 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 00:21:48] 2025-07-27 22:21:16,126 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 00:21:48] 2025-07-27 22:21:16,126 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 00:21:48] 2025-07-27 22:21:16,126 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 00:21:48] 2025-07-27 22:21:16,126 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 00:21:48] 2025-07-27 22:21:16,126 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 00:21:48] 2025-07-27 22:21:16,126 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 00:21:48] 2025-07-27 22:21:16,126 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 00:21:48] 2025-07-27 22:21:16,126 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 00:21:48] 2025-07-27 22:21:16,126 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 00:21:48] 2025-07-27 22:21:16,126 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 00:21:48] 2025-07-27 22:21:16,126 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 00:21:48] 2025-07-27 22:21:16,126 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 00:21:48] 2025-07-27 22:21:16,126 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 00:21:48] 2025-07-27 22:21:16,126 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 00:21:48] 2025-07-27 22:21:16,126 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 00:21:48] 2025-07-27 22:21:16,126 | INFO     | job 6745068683 has completed (purged errors)
[2025-07-28 00:21:48] 2025-07-27 22:21:16,126 | INFO     | overall cleanup function is called
[2025-07-28 00:21:48] 2025-07-27 22:21:17,133 | INFO     | --- collectZombieJob: --- 10, [3890093]
[2025-07-28 00:21:48] 2025-07-27 22:21:17,133 | INFO     | zombie collector waiting for pid 3890093
[2025-07-28 00:21:48] 2025-07-27 22:21:17,133 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 00:21:48] 2025-07-27 22:21:17,133 | INFO     | collected zombie processes
[2025-07-28 00:21:48] 2025-07-27 22:21:17,133 | INFO     | will attempt to kill all subprocesses of pid=3890093
[2025-07-28 00:21:48] 2025-07-27 22:21:17,175 | INFO     | process IDs to be killed: [3890093] (in reverse order)
[2025-07-28 00:21:48] 2025-07-27 22:21:17,197 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 00:21:48] 2025-07-27 22:21:17,198 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 00:21:48] 2025-07-27 22:21:17,199 | INFO     | did not find any defunct processes belonging to 3890093
[2025-07-28 00:21:48] 2025-07-27 22:21:17,200 | INFO     | did not find any defunct processes belonging to 3890093
[2025-07-28 00:21:48] 2025-07-27 22:21:17,200 | INFO     | ready for new job
[2025-07-28 00:21:48] 2025-07-27 22:21:17,200 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 00:21:48] 2025-07-27 22:21:17,200 | INFO     | ***************************************
[2025-07-28 00:21:48] 2025-07-27 22:21:17,200 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 00:21:48] 2025-07-27 22:21:17,200 | INFO     | ***************************************
[2025-07-28 00:21:48] 2025-07-27 22:21:17,200 | INFO     | 
[2025-07-28 00:21:48] 2025-07-27 22:21:17,201 | INFO     | architecture information:
[2025-07-28 00:21:48] 2025-07-27 22:21:17,201 | INFO     | executing command: cat /etc/os-release
[2025-07-28 00:21:48] 2025-07-27 22:21:17,209 | INFO     | cat /etc/os-release:
[2025-07-28 00:21:48] NAME="CentOS Linux"
[2025-07-28 00:21:48] VERSION="7 (Core)"
[2025-07-28 00:21:48] ID="centos"
[2025-07-28 00:21:48] ID_LIKE="rhel fedora"
[2025-07-28 00:21:48] VERSION_ID="7"
[2025-07-28 00:21:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 00:21:48] ANSI_COLOR="0;31"
[2025-07-28 00:21:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 00:21:48] HOME_URL="https://www.centos.org/"
[2025-07-28 00:21:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 00:21:48] 
[2025-07-28 00:21:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 00:21:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 00:21:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 00:21:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 00:21:48] 
[2025-07-28 00:21:48] 2025-07-27 22:21:17,209 | INFO     | ***************************************
[2025-07-28 00:21:48] 2025-07-27 22:21:17,712 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-07-28 00:21:48] 2025-07-27 22:21:17,723 | INFO     | sufficient remaining disk space (348717580288 B)
[2025-07-28 00:21:48] 2025-07-27 22:21:17,723 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 00:21:48] 2025-07-27 22:21:17,723 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 00:21:48] 2025-07-27 22:21:17,723 | INFO     | update_server=False
[2025-07-28 00:21:48] 2025-07-27 22:21:17,723 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 00:21:48] 2025-07-27 22:21:17,724 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 00:21:48] 2025-07-27 22:21:17,724 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 00:21:48] 2025-07-27 22:21:17,724 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 00:21:48] 2025-07-27 22:21:17,724 | INFO     | aborting loop
[2025-07-28 00:21:48] 2025-07-27 22:21:17,745 | INFO     | all job control threads have been joined
[2025-07-28 00:21:48] 2025-07-27 22:21:18,680 | INFO     | all data control threads have been joined
[2025-07-28 00:21:48] 2025-07-27 22:21:18,695 | INFO     | all payload control threads have been joined
[2025-07-28 00:21:48] 2025-07-27 22:21:18,729 | INFO     | [job] retrieve thread has finished
[2025-07-28 00:21:48] 2025-07-27 22:21:18,729 | INFO     | [job] queue monitor thread has finished
[2025-07-28 00:21:48] 2025-07-27 22:21:18,729 | INFO     | [job] job monitor thread has finished
[2025-07-28 00:21:48] 2025-07-27 22:21:18,750 | INFO     | [job] control thread has finished
[2025-07-28 00:21:48] 2025-07-27 22:21:18,924 | INFO     | [payload] failed_post thread has finished
[2025-07-28 00:21:48] 2025-07-27 22:21:19,070 | INFO     | [data] copytool_in thread has finished
[2025-07-28 00:21:48] 2025-07-27 22:21:19,439 | INFO     | [payload] validate_post thread has finished
[2025-07-28 00:21:48] 2025-07-27 22:21:19,686 | INFO     | [data] control thread has finished
[2025-07-28 00:21:48] 2025-07-27 22:21:19,700 | INFO     | [payload] control thread has finished
[2025-07-28 00:21:48] 2025-07-27 22:21:19,730 | INFO     | [data] copytool_out thread has finished
[2025-07-28 00:21:48] 2025-07-27 22:21:19,776 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 00:21:48] 2025-07-27 22:21:19,810 | INFO     | [job] validate thread has finished
[2025-07-28 00:21:48] 2025-07-27 22:21:19,870 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 00:21:48] 2025-07-27 22:21:19,939 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 00:21:48] 2025-07-27 22:21:20,926 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 00:21:48] 2025-07-27 22:21:24,933 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 00:21:48] 2025-07-27 22:21:28,078 | INFO     | job.realtimelogging is not enabled
[2025-07-28 00:21:48] 2025-07-27 22:21:29,084 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 00:21:48] 2025-07-27 22:21:30,855 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139769293711168)>', '<ExcThread(monitor, started 139768939656960)>']
[2025-07-28 00:21:48] 2025-07-27 22:21:35,881 | INFO     | all workflow threads have been joined
[2025-07-28 00:21:48] 2025-07-27 22:21:35,881 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 00:21:48] 2025-07-27 22:21:35,882 | INFO     | traces error code: 0
[2025-07-28 00:21:48] 2025-07-27 22:21:35,882 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 00:21:48] 2025-07-27 22:21:48,550 | INFO     | PID=3883610 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 00:21:48] 2025-07-27 22:21:48,550 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 00:21:48] 2025-07-27 22:21:48,551 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 00:21:48] 2025-07-27 22:21:48,551 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 00:21:48] 2025-07-27 22:21:48,551 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 00:21:48] 2025-07-27 22:21:48,551 | INFO     | [monitor] control thread has ended
[2025-07-28 00:21:48] 2025-07-27 22:21:48,595 [wrapper] ==== pilot stdout END ====
[2025-07-28 00:21:48] 2025-07-27 22:21:48,598 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 00:21:48] 2025-07-27 22:21:48,600 [wrapper] pilotpid: 3883610
[2025-07-28 00:21:48] 2025-07-27 22:21:48,602 [wrapper] Pilot exit status: 0
[2025-07-28 00:21:48] 2025-07-27 22:21:48,609 [wrapper] pandaids: 6745068683
[2025-07-28 00:21:48] 2025-07-27 22:21:48,625 [wrapper] cleanup supervisor_pilot 3902532 3883611
[2025-07-28 00:21:48] 2025-07-27 22:21:48,627 [wrapper] Test setup, not cleaning
[2025-07-28 00:21:48] 2025-07-27 22:21:48,629 [wrapper] apfmon messages muted
[2025-07-28 00:21:48] 2025-07-27 22:21:48,632 [wrapper] ==== wrapper stdout END ====
[2025-07-28 00:21:48] 2025-07-27 22:21:48,634 [wrapper] ==== wrapper stderr END ====
[2025-07-28 00:21:48]  *** Error codes and diagnostics ***
[2025-07-28 00:21:48]     "exeErrorCode": 0,
[2025-07-28 00:21:48]     "exeErrorDiag": "",
[2025-07-28 00:21:48]     "pilotErrorCode": 0,
[2025-07-28 00:21:48]     "pilotErrorDiag": "",
[2025-07-28 00:21:48]  *** Listing of results directory ***
[2025-07-28 00:21:48] total 430956
[2025-07-28 00:21:48] -rw-r--r-- 1 boinc boinc      5112 Jul 26 03:04 queuedata.json
[2025-07-28 00:21:48] -rw-r--r-- 1 boinc boinc    530466 Jul 26 03:05 pilot3.tar.gz
[2025-07-28 00:21:48] -rwx------ 1 boinc boinc     36292 Jul 26 03:05 runpilot2-wrapper.sh
[2025-07-28 00:21:48] -rw-r--r-- 1 boinc boinc       100 Jul 27 22:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 00:21:48] -rwxr-xr-x 1 boinc boinc      7986 Jul 27 22:50 run_atlas
[2025-07-28 00:21:48] -rw-r--r-- 1 boinc boinc       105 Jul 27 22:50 job.xml
[2025-07-28 00:21:48] -rw-r--r-- 2 boinc boinc 231490499 Jul 27 22:50 EVNT.45743347._001672.pool.root.1
[2025-07-28 00:21:48] -rw-r--r-- 2 boinc boinc    542901 Jul 27 22:50 input.tar.gz
[2025-07-28 00:21:48] -rw-r--r-- 2 boinc boinc     15095 Jul 27 22:50 start_atlas.sh
[2025-07-28 00:21:48] drwxrwx--x 2 boinc boinc      4096 Jul 27 22:50 shared
[2025-07-28 00:21:48] -rw-r--r-- 1 boinc boinc         0 Jul 27 22:50 boinc_setup_complete
[2025-07-28 00:21:48] -rw-r--r-- 1 boinc boinc      6445 Jul 27 22:50 init_data.xml
[2025-07-28 00:21:48] -rw-r--r-- 1 boinc boinc         0 Jul 27 22:50 boinc_lockfile
[2025-07-28 00:21:48] -rw-r--r-- 1 boinc boinc      2563 Jul 27 22:50 pandaJob.out
[2025-07-28 00:21:48] -rw------- 1 boinc boinc    980109 Jul 27 22:50 agis_schedconf.cvmfs.json
[2025-07-28 00:21:48] -rw------- 1 boinc boinc   1593052 Jul 27 22:50 agis_ddmendpoints.agis.ALL.json
[2025-07-28 00:21:48] drwx------ 4 boinc boinc      4096 Jul 27 22:50 pilot3
[2025-07-28 00:21:48] -rw------- 1 boinc boinc 204430298 Jul 28 00:20 HITS.45743349._029894.pool.root.1
[2025-07-28 00:21:48] -rw-r--r-- 1 boinc boinc       529 Jul 28 00:20 boinc_task_state.xml
[2025-07-28 00:21:48] -rw------- 1 boinc boinc      1024 Jul 28 00:21 memory_monitor_summary.json
[2025-07-28 00:21:48] -rw------- 1 boinc boinc    224923 Jul 28 00:21 log.45743349._029894.job.log.tgz.1
[2025-07-28 00:21:48] -rw------- 1 boinc boinc        95 Jul 28 00:21 pilot_heartbeat.json
[2025-07-28 00:21:48] -rw------- 1 boinc boinc      7772 Jul 28 00:21 heartbeat.json
[2025-07-28 00:21:48] -rw-r--r-- 1 boinc boinc        27 Jul 28 00:21 wrapper_checkpoint.txt
[2025-07-28 00:21:48] -rw-r--r-- 1 boinc boinc      8192 Jul 28 00:21 boinc_mmap_file
[2025-07-28 00:21:48] -rw------- 1 boinc boinc       747 Jul 28 00:21 pilotlog.txt
[2025-07-28 00:21:48] -rw------- 1 boinc boinc    525477 Jul 28 00:21 log.45743349._029894.job.log.1
[2025-07-28 00:21:48] -rw------- 1 boinc boinc       357 Jul 28 00:21 output.list
[2025-07-28 00:21:48] -rw-r--r-- 1 boinc boinc       620 Jul 28 00:21 runtime_log
[2025-07-28 00:21:48] -rw------- 1 boinc boinc    768000 Jul 28 00:21 result.tar.gz
[2025-07-28 00:21:48] -rw-r--r-- 1 boinc boinc      8754 Jul 28 00:21 runtime_log.err
[2025-07-28 00:21:48] -rw------- 1 boinc boinc       663 Jul 28 00:21 CdwNDm1Wiz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmtrzKDmpunVDn.diag
[2025-07-28 00:21:48] -rw-r--r-- 1 boinc boinc     21761 Jul 28 00:21 stderr.txt
[2025-07-28 00:21:48] HITS file was successfully produced:
[2025-07-28 00:21:48] -rw------- 1 boinc boinc 204430298 Jul 28 00:20 shared/HITS.pool.root.1
[2025-07-28 00:21:48]  *** Contents of shared directory: ***
[2025-07-28 00:21:48] total 427016
[2025-07-28 00:21:48] -rw-r--r-- 2 boinc boinc 231490499 Jul 27 22:50 ATLAS.root_0
[2025-07-28 00:21:48] -rw-r--r-- 2 boinc boinc    542901 Jul 27 22:50 input.tar.gz
[2025-07-28 00:21:48] -rw-r--r-- 2 boinc boinc     15095 Jul 27 22:50 start_atlas.sh
[2025-07-28 00:21:48] -rw------- 1 boinc boinc 204430298 Jul 28 00:20 HITS.pool.root.1
[2025-07-28 00:21:48] -rw------- 1 boinc boinc    768000 Jul 28 00:21 result.tar.gz
00:21:50 (3879965): run_atlas exited; CPU time 15597.974852
00:21:50 (3879965): called boinc_finish(0)

</stderr_txt>
]]>

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