Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
04:21:58 (18514): wrapper (7.7.26015): starting
04:21:58 (18514): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 04:21:58] Arguments: --nthreads 12
[2025-07-27 04:21:58] Threads: 12
[2025-07-27 04:21:58] Checking for CVMFS
[2025-07-27 04:21:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 04:21:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 04:21:58] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 04:21:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 04:21:58] 2.11.2.0 2925 111756 94100 148805 0 56 12326572 20275201 1 130560 0 38026770 99.973 9368391 10337 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 04:21:58] CVMFS is ok
[2025-07-27 04:21:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 04:21:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 04:21:58] Further information can be found at the LHC@home message board.
[2025-07-27 04:21:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 04:21:58] Checking for apptainer binary...
[2025-07-27 04:21:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 04:21:58] Running /usr/bin/apptainer --version
[2025-07-27 04:21:58] apptainer version 1.3.2-1.el7
[2025-07-27 04:21:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 04:22:00] c-205-10.aglt2.org
[2025-07-27 04:22:00] apptainer works
[2025-07-27 04:22:00] Set ATHENA_PROC_NUMBER=12
[2025-07-27 04:22:00] Set ATHENA_CORE_NUMBER=12
[2025-07-27 04:22:00] Starting ATLAS job with PandaID=6745967390
[2025-07-27 04:22:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 06:02:22]  *** The last 200 lines of the pilot log: ***
[2025-07-27 06:02:22]  lfn=log.45759028._000059.job.log.tgz.1
[2025-07-27 06:02:22]  mtime=0
[2025-07-27 06:02:22]  protocol_id=None
[2025-07-27 06:02:22]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 06:02:22]  replicas=None
[2025-07-27 06:02:22]  scope=mc23_13p6TeV
[2025-07-27 06:02:22]  status=None
[2025-07-27 06:02:22]  status_code=0
[2025-07-27 06:02:22]  storage_token=
[2025-07-27 06:02:22]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745967390/log.45759028._000059.job.log.tgz.1
[2025-07-27 06:02:22]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d2/07/log.45759028._000059.job.log.tgz.1
[2025-07-27 06:02:22]  workdir=None
[2025-07-27 06:02:22] ]
[2025-07-27 06:02:22] 2025-07-27 10:01:41,412 | INFO     | transferring file log.45759028._000059.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745967390/log.45759028._000059.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 06:02:22] 2025-07-27 10:01:41,412 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745967390/log.45759028._000059.job.log.tgz.1 /tmp/boinchome/slots/0/log.45759028._000059.job
[2025-07-27 06:02:22] 2025-07-27 10:01:41,436 | INFO     | adding to output.list: log.45759028._000059.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d2/07/log.45759028._000059.job.log.tg
[2025-07-27 06:02:22] 2025-07-27 10:01:41,437 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 06:02:22] 2025-07-27 10:01:41,437 | INFO     | summary of transferred files:
[2025-07-27 06:02:22] 2025-07-27 10:01:41,437 | INFO     |  -- lfn=log.45759028._000059.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 06:02:22] 2025-07-27 10:01:41,438 | INFO     | stage-out finished correctly
[2025-07-27 06:02:22] 2025-07-27 10:01:41,603 | INFO     | monitor loop #444: job 0:6745967390 is in state 'finished'
[2025-07-27 06:02:22] 2025-07-27 10:01:41,603 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 06:02:22] 2025-07-27 10:01:42,782 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 06:02:22] 2025-07-27 10:01:44,107 | INFO     | monitor loop #445: job 0:6745967390 is in state 'finished'
[2025-07-27 06:02:22] 2025-07-27 10:01:44,107 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 06:02:22] 2025-07-27 10:01:44,240 | INFO     | job 6745967390 has state=finished
[2025-07-27 06:02:22] 2025-07-27 10:01:44,240 | INFO     | preparing for final server update for job 6745967390 in state='finished'
[2025-07-27 06:02:22] 2025-07-27 10:01:44,306 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-27 06:02:22] 2025-07-27 10:01:44,307 | INFO     | this job has now completed (state=finished)
[2025-07-27 06:02:22] 2025-07-27 10:01:44,307 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 06:02:22] 2025-07-27 10:01:44,307 | INFO     | log transfer has been attempted: DONE
[2025-07-27 06:02:22] 2025-07-27 10:01:44,307 | INFO     | job 6745967390 has finished - writing final server update
[2025-07-27 06:02:22] 2025-07-27 10:01:44,307 | INFO     | total number of processed events: 400 (read)
[2025-07-27 06:02:22] 2025-07-27 10:01:44,308 | INFO     | executing command: lscpu
[2025-07-27 06:02:22] 2025-07-27 10:01:44,334 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 06:02:22] 2025-07-27 10:01:46,610 | INFO     | monitor loop #446: job 0:6745967390 is in state 'finished'
[2025-07-27 06:02:22] 2025-07-27 10:01:46,610 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 06:02:22] 2025-07-27 10:01:47,654 | INFO     | PID=22201 has CPU usage=6.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-27 06:02:22] 2025-07-27 10:01:48,990 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-27 06:02:22] 2025-07-27 10:01:48,994 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1718.0
[2025-07-27 06:02:22] 2025-07-27 10:01:48,996 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745967390/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 06:02:22] 2025-07-27 10:01:48,997 | INFO     | extracted standard info from prmon json
[2025-07-27 06:02:22] 2025-07-27 10:01:48,997 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 06:02:22] 2025-07-27 10:01:48,997 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 06:02:22] 2025-07-27 10:01:48,997 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 06:02:22] 2025-07-27 10:01:48,998 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 06:02:22] 2025-07-27 10:01:48,999 | INFO     | fitting pss+swap vs Time
[2025-07-27 06:02:22] 2025-07-27 10:01:49,000 | INFO     | sum of square deviations: 233641590.0
[2025-07-27 06:02:22] 2025-07-27 10:01:49,000 | INFO     | sum of deviations: -16197349520.0
[2025-07-27 06:02:22] 2025-07-27 10:01:49,000 | INFO     | mean x: 1753607615.0
[2025-07-27 06:02:22] 2025-07-27 10:01:49,000 | INFO     | mean y: 2812885.956043956
[2025-07-27 06:02:22] 2025-07-27 10:01:49,000 | INFO     | -- intersect: 121572758806.49438
[2025-07-27 06:02:22] 2025-07-27 10:01:49,000 | INFO     | intersect: 121572758806.49438
[2025-07-27 06:02:22] 2025-07-27 10:01:49,001 | INFO     | chi2: 0.0731180653188466
[2025-07-27 06:02:22] 2025-07-27 10:01:49,001 | INFO     | -- intersect: 121572758806.49438
[2025-07-27 06:02:22] 2025-07-27 10:01:49,001 | INFO     | current memory leak: -69.33 B/s (using 91 data points, chi2=0.07)
[2025-07-27 06:02:22] 2025-07-27 10:01:49,001 | INFO     | could have reported an average CPU frequency of 2128 MHz (7 samples)
[2025-07-27 06:02:22] 2025-07-27 10:01:49,001 | INFO     | ..............................
[2025-07-27 06:02:22] 2025-07-27 10:01:49,001 | INFO     | . Timing measurements:
[2025-07-27 06:02:22] 2025-07-27 10:01:49,002 | INFO     | . get job = 0 s
[2025-07-27 06:02:22] 2025-07-27 10:01:49,002 | INFO     | . initial setup = 2 s
[2025-07-27 06:02:22] 2025-07-27 10:01:49,002 | INFO     | . payload setup = 9 s
[2025-07-27 06:02:22] 2025-07-27 10:01:49,002 | INFO     | . stage-in = 0 s
[2025-07-27 06:02:22] 2025-07-27 10:01:49,002 | INFO     | . payload execution = 5937 s
[2025-07-27 06:02:22] 2025-07-27 10:01:49,002 | INFO     | . stage-out = 0 s
[2025-07-27 06:02:22] 2025-07-27 10:01:49,002 | INFO     | . log creation = 0 s
[2025-07-27 06:02:22] 2025-07-27 10:01:49,002 | INFO     | ..............................
[2025-07-27 06:02:22] 2025-07-27 10:01:49,086 | INFO     | 
[2025-07-27 06:02:22] 2025-07-27 10:01:49,086 | INFO     | job summary report
[2025-07-27 06:02:22] 2025-07-27 10:01:49,086 | INFO     | --------------------------------------------------
[2025-07-27 06:02:22] 2025-07-27 10:01:49,086 | INFO     | PanDA job id: 6745967390
[2025-07-27 06:02:22] 2025-07-27 10:01:49,086 | INFO     | task id: 45759028
[2025-07-27 06:02:22] 2025-07-27 10:01:49,086 | INFO     | errors: (none)
[2025-07-27 06:02:22] 2025-07-27 10:01:49,086 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 06:02:22] 2025-07-27 10:01:49,086 | INFO     | pilot state: finished 
[2025-07-27 06:02:22] 2025-07-27 10:01:49,086 | INFO     | transexitcode: 0
[2025-07-27 06:02:22] 2025-07-27 10:01:49,087 | INFO     | exeerrorcode: 0
[2025-07-27 06:02:22] 2025-07-27 10:01:49,087 | INFO     | exeerrordiag: 
[2025-07-27 06:02:22] 2025-07-27 10:01:49,087 | INFO     | exitcode: 0
[2025-07-27 06:02:22] 2025-07-27 10:01:49,087 | INFO     | exitmsg: OK
[2025-07-27 06:02:22] 2025-07-27 10:01:49,087 | INFO     | cpuconsumptiontime: 66047 s
[2025-07-27 06:02:22] 2025-07-27 10:01:49,087 | INFO     | nevents: 400
[2025-07-27 06:02:22] 2025-07-27 10:01:49,087 | INFO     | neventsw: 0
[2025-07-27 06:02:22] 2025-07-27 10:01:49,087 | INFO     | pid: 28693
[2025-07-27 06:02:22] 2025-07-27 10:01:49,087 | INFO     | pgrp: 28693
[2025-07-27 06:02:22] 2025-07-27 10:01:49,087 | INFO     | corecount: 12
[2025-07-27 06:02:22] 2025-07-27 10:01:49,088 | INFO     | event service: False
[2025-07-27 06:02:22] 2025-07-27 10:01:49,088 | INFO     | sizes: {0: 2397459, 5: 2397721, 11: 2397777, 5950: 2424504, 5952: 2433502, 5953: 2433558, 5959: 2433880}
[2025-07-27 06:02:22] 2025-07-27 10:01:49,088 | INFO     | --------------------------------------------------
[2025-07-27 06:02:22] 2025-07-27 10:01:49,088 | INFO     | 
[2025-07-27 06:02:22] 2025-07-27 10:01:49,088 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 06:02:22] 2025-07-27 10:01:49,110 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 06:02:22] 2025-07-27 10:01:49,111 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 06:02:22] 2025-07-27 10:01:49,111 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 06:02:22] 2025-07-27 10:01:49,111 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 06:02:22] 2025-07-27 10:01:49,111 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 06:02:22] 2025-07-27 10:01:49,111 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 06:02:22] 2025-07-27 10:01:49,112 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 06:02:22] 2025-07-27 10:01:49,112 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 06:02:22] 2025-07-27 10:01:49,112 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 06:02:22] 2025-07-27 10:01:49,112 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 06:02:22] 2025-07-27 10:01:49,112 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 06:02:22] 2025-07-27 10:01:49,112 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 06:02:22] 2025-07-27 10:01:49,113 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 06:02:22] 2025-07-27 10:01:49,113 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 06:02:22] 2025-07-27 10:01:49,113 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 06:02:22] 2025-07-27 10:01:49,113 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 06:02:22] 2025-07-27 10:01:49,113 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 06:02:22] 2025-07-27 10:01:49,114 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 06:02:22] 2025-07-27 10:01:49,114 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 06:02:22] 2025-07-27 10:01:49,114 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 06:02:22] 2025-07-27 10:01:49,114 | INFO     | job 6745967390 has completed (purged errors)
[2025-07-27 06:02:22] 2025-07-27 10:01:49,114 | INFO     | overall cleanup function is called
[2025-07-27 06:02:22] 2025-07-27 10:01:50,123 | INFO     | --- collectZombieJob: --- 10, [28693]
[2025-07-27 06:02:22] 2025-07-27 10:01:50,123 | INFO     | zombie collector waiting for pid 28693
[2025-07-27 06:02:22] 2025-07-27 10:01:50,156 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 06:02:22] 2025-07-27 10:01:50,156 | INFO     | collected zombie processes
[2025-07-27 06:02:22] 2025-07-27 10:01:50,156 | INFO     | will attempt to kill all subprocesses of pid=28693
[2025-07-27 06:02:22] 2025-07-27 10:01:50,259 | INFO     | process IDs to be killed: [28693] (in reverse order)
[2025-07-27 06:02:22] 2025-07-27 10:01:50,312 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 06:02:22] 2025-07-27 10:01:50,313 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 06:02:22] 2025-07-27 10:01:50,316 | INFO     | did not find any defunct processes belonging to 28693
[2025-07-27 06:02:22] 2025-07-27 10:01:50,319 | INFO     | did not find any defunct processes belonging to 28693
[2025-07-27 06:02:22] 2025-07-27 10:01:50,319 | INFO     | ready for new job
[2025-07-27 06:02:22] 2025-07-27 10:01:50,319 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 06:02:22] 2025-07-27 10:01:50,320 | INFO     | ***************************************
[2025-07-27 06:02:22] 2025-07-27 10:01:50,320 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 06:02:22] 2025-07-27 10:01:50,320 | INFO     | ***************************************
[2025-07-27 06:02:22] 2025-07-27 10:01:50,321 | INFO     | 
[2025-07-27 06:02:22] 2025-07-27 10:01:50,321 | INFO     | architecture information:
[2025-07-27 06:02:22] 2025-07-27 10:01:50,322 | INFO     | executing command: cat /etc/os-release
[2025-07-27 06:02:22] 2025-07-27 10:01:50,336 | INFO     | cat /etc/os-release:
[2025-07-27 06:02:22] NAME="CentOS Linux"
[2025-07-27 06:02:22] VERSION="7 (Core)"
[2025-07-27 06:02:22] ID="centos"
[2025-07-27 06:02:22] ID_LIKE="rhel fedora"
[2025-07-27 06:02:22] VERSION_ID="7"
[2025-07-27 06:02:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 06:02:22] ANSI_COLOR="0;31"
[2025-07-27 06:02:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 06:02:22] HOME_URL="https://www.centos.org/"
[2025-07-27 06:02:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 06:02:22] 
[2025-07-27 06:02:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 06:02:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 06:02:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 06:02:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 06:02:22] 
[2025-07-27 06:02:22] 2025-07-27 10:01:50,337 | INFO     | ***************************************
[2025-07-27 06:02:22] 2025-07-27 10:01:50,840 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 06:02:22] 2025-07-27 10:01:50,856 | INFO     | sufficient remaining disk space (29372710912 B)
[2025-07-27 06:02:22] 2025-07-27 10:01:50,857 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 06:02:22] 2025-07-27 10:01:50,857 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 06:02:22] 2025-07-27 10:01:50,857 | INFO     | update_server=False
[2025-07-27 06:02:22] 2025-07-27 10:01:50,857 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 06:02:22] 2025-07-27 10:01:50,858 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 06:02:22] 2025-07-27 10:01:50,858 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 06:02:22] 2025-07-27 10:01:50,858 | INFO     | aborting loop
[2025-07-27 06:02:22] 2025-07-27 10:01:50,862 | INFO     | all data control threads have been joined
[2025-07-27 06:02:22] 2025-07-27 10:01:51,352 | INFO     | all payload control threads have been joined
[2025-07-27 06:02:22] 2025-07-27 10:01:51,863 | INFO     | [job] retrieve thread has finished
[2025-07-27 06:02:22] 2025-07-27 10:01:51,864 | INFO     | [job] queue monitor thread has finished
[2025-07-27 06:02:22] 2025-07-27 10:01:51,864 | INFO     | [job] job monitor thread has finished
[2025-07-27 06:02:22] 2025-07-27 10:01:51,867 | INFO     | [data] control thread has finished
[2025-07-27 06:02:22] 2025-07-27 10:01:52,053 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 06:02:22] 2025-07-27 10:01:52,160 | INFO     | all job control threads have been joined
[2025-07-27 06:02:22] 2025-07-27 10:01:52,186 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 06:02:22] 2025-07-27 10:01:52,191 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 06:02:22] 2025-07-27 10:01:52,357 | INFO     | [payload] control thread has finished
[2025-07-27 06:02:22] 2025-07-27 10:01:52,458 | INFO     | [payload] validate_post thread has finished
[2025-07-27 06:02:22] 2025-07-27 10:01:52,570 | INFO     | [data] copytool_in thread has finished
[2025-07-27 06:02:22] 2025-07-27 10:01:52,913 | INFO     | [payload] failed_post thread has finished
[2025-07-27 06:02:22] 2025-07-27 10:01:53,135 | INFO     | [job] validate thread has finished
[2025-07-27 06:02:22] 2025-07-27 10:01:53,166 | INFO     | [job] control thread has finished
[2025-07-27 06:02:22] 2025-07-27 10:01:53,171 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 06:02:22] 2025-07-27 10:01:53,223 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 06:02:22] 2025-07-27 10:01:53,380 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 06:02:22] 2025-07-27 10:01:54,058 | INFO     | [data] copytool_out thread has finished
[2025-07-27 06:02:22] 2025-07-27 10:01:57,386 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 06:02:22] 2025-07-27 10:01:58,719 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139774197241664)>', '<ExcThread(monitor, started 139773427558144)>']
[2025-07-27 06:02:22] 2025-07-27 10:02:03,738 | INFO     | all workflow threads have been joined
[2025-07-27 06:02:22] 2025-07-27 10:02:03,739 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 06:02:22] 2025-07-27 10:02:03,739 | INFO     | traces error code: 0
[2025-07-27 06:02:22] 2025-07-27 10:02:03,739 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 06:02:22] 2025-07-27 10:02:21,860 | INFO     | PID=22201 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-27 06:02:22] 2025-07-27 10:02:21,861 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 06:02:22] 2025-07-27 10:02:21,861 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 06:02:22] 2025-07-27 10:02:21,861 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 06:02:22] 2025-07-27 10:02:21,861 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 06:02:22] 2025-07-27 10:02:21,861 | INFO     | [monitor] control thread has ended
[2025-07-27 06:02:22] 2025-07-27 10:02:21,952 [wrapper] ==== pilot stdout END ====
[2025-07-27 06:02:22] 2025-07-27 10:02:21,956 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 06:02:22] 2025-07-27 10:02:21,960 [wrapper] pilotpid: 22201
[2025-07-27 06:02:22] 2025-07-27 10:02:21,964 [wrapper] Pilot exit status: 0
[2025-07-27 06:02:22] 2025-07-27 10:02:21,981 [wrapper] pandaids: 6745967390
[2025-07-27 06:02:22] 2025-07-27 10:02:22,025 [wrapper] cleanup supervisor_pilot  5513 22202
[2025-07-27 06:02:22] 2025-07-27 10:02:22,029 [wrapper] Test setup, not cleaning
[2025-07-27 06:02:22] 2025-07-27 10:02:22,033 [wrapper] apfmon messages muted
[2025-07-27 06:02:22] 2025-07-27 10:02:22,037 [wrapper] ==== wrapper stdout END ====
[2025-07-27 06:02:22] 2025-07-27 10:02:22,041 [wrapper] ==== wrapper stderr END ====
[2025-07-27 06:02:22]  *** Error codes and diagnostics ***
[2025-07-27 06:02:22]     "exeErrorCode": 0,
[2025-07-27 06:02:22]     "exeErrorDiag": "",
[2025-07-27 06:02:22]     "pilotErrorCode": 0,
[2025-07-27 06:02:22]     "pilotErrorDiag": "",
[2025-07-27 06:02:22]  *** Listing of results directory ***
[2025-07-27 06:02:22] total 405312
[2025-07-27 06:02:22] -rw-r--r-- 1 boincer umatlas    530466 Jul 26 23:23 pilot3.tar.gz
[2025-07-27 06:02:22] -rw-r--r-- 1 boincer umatlas      5112 Jul 26 23:24 queuedata.json
[2025-07-27 06:02:22] -rwx------ 1 boincer umatlas     36292 Jul 26 23:25 runpilot2-wrapper.sh
[2025-07-27 06:02:22] -rw-r--r-- 1 boincer umatlas       100 Jul 27 04:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 06:02:22] -rwxr-xr-x 1 boincer umatlas      7986 Jul 27 04:21 run_atlas
[2025-07-27 06:02:22] -rw-r--r-- 1 boincer umatlas       105 Jul 27 04:21 job.xml
[2025-07-27 06:02:22] -rw-r--r-- 2 boincer umatlas 237296544 Jul 27 04:21 EVNT.45759023._000003.pool.root.1
[2025-07-27 06:02:22] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 04:21 start_atlas.sh
[2025-07-27 06:02:22] drwxrwx--x 2 boincer umatlas      4096 Jul 27 04:21 shared
[2025-07-27 06:02:22] -rw-r--r-- 2 boincer umatlas    542884 Jul 27 04:21 input.tar.gz
[2025-07-27 06:02:22] -rw-r--r-- 1 boincer umatlas         0 Jul 27 04:21 boinc_lockfile
[2025-07-27 06:02:22] -rw-r--r-- 1 boincer umatlas      2552 Jul 27 04:22 pandaJob.out
[2025-07-27 06:02:22] -rw------- 1 boincer umatlas    980109 Jul 27 04:22 agis_schedconf.cvmfs.json
[2025-07-27 06:02:22] -rw------- 1 boincer umatlas   1593052 Jul 27 04:22 agis_ddmendpoints.agis.ALL.json
[2025-07-27 06:02:22] drwx------ 4 boincer umatlas      4096 Jul 27 04:22 pilot3
[2025-07-27 06:02:22] -rw-r--r-- 1 boincer umatlas      5868 Jul 27 05:56 init_data.xml
[2025-07-27 06:02:22] -rw------- 1 boincer umatlas 172004048 Jul 27 06:01 HITS.45759028._000059.pool.root.1
[2025-07-27 06:02:22] -rw------- 1 boincer umatlas        95 Jul 27 06:01 pilot_heartbeat.json
[2025-07-27 06:02:22] -rw------- 1 boincer umatlas      1049 Jul 27 06:01 memory_monitor_summary.json
[2025-07-27 06:02:22] -rw------- 1 boincer umatlas    372650 Jul 27 06:01 log.45759028._000059.job.log.tgz.1
[2025-07-27 06:02:22] -rw-r--r-- 1 boincer umatlas       530 Jul 27 06:01 boinc_task_state.xml
[2025-07-27 06:02:22] -rw------- 1 boincer umatlas      7843 Jul 27 06:01 heartbeat.json
[2025-07-27 06:02:22] -rw-r--r-- 1 boincer umatlas      8192 Jul 27 06:02 boinc_mmap_file
[2025-07-27 06:02:22] -rw-r--r-- 1 boincer umatlas        27 Jul 27 06:02 wrapper_checkpoint.txt
[2025-07-27 06:02:22] -rw------- 1 boincer umatlas       745 Jul 27 06:02 pilotlog.txt
[2025-07-27 06:02:22] -rw------- 1 boincer umatlas    558719 Jul 27 06:02 log.45759028._000059.job.log.1
[2025-07-27 06:02:22] -rw------- 1 boincer umatlas       357 Jul 27 06:02 output.list
[2025-07-27 06:02:22] -rw-r--r-- 1 boincer umatlas       620 Jul 27 06:02 runtime_log
[2025-07-27 06:02:22] -rw------- 1 boincer umatlas    952320 Jul 27 06:02 result.tar.gz
[2025-07-27 06:02:22] -rw-r--r-- 1 boincer umatlas      8662 Jul 27 06:02 runtime_log.err
[2025-07-27 06:02:22] -rw------- 1 boincer umatlas       659 Jul 27 06:02 Ar6MDm3B7z7n9Rq4apOajLDm4fhM0noT9bVof3QYDmgp1KDmCzfkRm.diag
[2025-07-27 06:02:22] -rw-r--r-- 1 boincer umatlas     21763 Jul 27 06:02 stderr.txt
[2025-07-27 06:02:22] HITS file was successfully produced:
[2025-07-27 06:02:22] -rw------- 1 boincer umatlas 172004048 Jul 27 06:01 shared/HITS.pool.root.1
[2025-07-27 06:02:22]  *** Contents of shared directory: ***
[2025-07-27 06:02:22] total 401196
[2025-07-27 06:02:22] -rw-r--r-- 2 boincer umatlas 237296544 Jul 27 04:21 ATLAS.root_0
[2025-07-27 06:02:22] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 04:21 start_atlas.sh
[2025-07-27 06:02:22] -rw-r--r-- 2 boincer umatlas    542884 Jul 27 04:21 input.tar.gz
[2025-07-27 06:02:22] -rw------- 1 boincer umatlas 172004048 Jul 27 06:01 HITS.pool.root.1
[2025-07-27 06:02:22] -rw------- 1 boincer umatlas    952320 Jul 27 06:02 result.tar.gz
06:02:23 (18514): run_atlas exited; CPU time 65917.241569
06:02:23 (18514): called boinc_finish(0)

</stderr_txt>
]]>

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