Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:45:24 (2040489): wrapper (7.7.26015): starting
05:45:24 (2040489): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 05:45:24] Arguments: --nthreads 12
[2025-07-27 05:45:24] Threads: 12
[2025-07-27 05:45:24] Checking for CVMFS
[2025-07-27 05:45:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 05:45:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 05:45:25] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 05:45:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 05:45:25] 2.13.0.0 1190652 18202 328824 148807 2 105 30895937 32935936 6483 16776704 0 33151059 99.726 57222576 29266 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 05:45:25] CVMFS is ok
[2025-07-27 05:45:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 05:45:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 05:45:25] Further information can be found at the LHC@home message board.
[2025-07-27 05:45:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 05:45:25] Checking for apptainer binary...
[2025-07-27 05:45:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 05:45:25] Running /usr/bin/apptainer --version
[2025-07-27 05:45:25] apptainer version 1.4.1-1.el9
[2025-07-27 05:45:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 05:45:25] c6-1-26-3.aglt2.org
[2025-07-27 05:45:25] apptainer works
[2025-07-27 05:45:25] Set ATHENA_PROC_NUMBER=12
[2025-07-27 05:45:25] Set ATHENA_CORE_NUMBER=12
[2025-07-27 05:45:25] Starting ATLAS job with PandaID=6745967261
[2025-07-27 05:45:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 07:05:16]  *** The last 200 lines of the pilot log: ***
[2025-07-27 07:05:16]  lfn=log.45759557._000105.job.log.tgz.1
[2025-07-27 07:05:16]  mtime=0
[2025-07-27 07:05:16]  protocol_id=None
[2025-07-27 07:05:16]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 07:05:16]  replicas=None
[2025-07-27 07:05:16]  scope=mc23_13p6TeV
[2025-07-27 07:05:16]  status=None
[2025-07-27 07:05:16]  status_code=0
[2025-07-27 07:05:16]  storage_token=
[2025-07-27 07:05:16]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745967261/log.45759557._000105.job.log.tgz.1
[2025-07-27 07:05:16]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/32/86/log.45759557._000105.job.log.tgz.1
[2025-07-27 07:05:16]  workdir=None
[2025-07-27 07:05:16] ]
[2025-07-27 07:05:16] 2025-07-27 11:04:35,895 | INFO     | transferring file log.45759557._000105.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745967261/log.45759557._000105.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 07:05:16] 2025-07-27 11:04:35,895 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745967261/log.45759557._000105.job.log.tgz.1 /tmp/boinchome/slots/0/log.45759557._000105.job
[2025-07-27 07:05:16] 2025-07-27 11:04:35,916 | INFO     | adding to output.list: log.45759557._000105.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/32/86/log.45759557._000105.job.log.tg
[2025-07-27 07:05:16] 2025-07-27 11:04:35,917 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 07:05:16] 2025-07-27 11:04:35,917 | INFO     | summary of transferred files:
[2025-07-27 07:05:16] 2025-07-27 11:04:35,917 | INFO     |  -- lfn=log.45759557._000105.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 07:05:16] 2025-07-27 11:04:35,917 | INFO     | stage-out finished correctly
[2025-07-27 07:05:16] 2025-07-27 11:04:36,008 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 07:05:16] 2025-07-27 11:04:38,247 | INFO     | job 6745967261 has state=finished
[2025-07-27 07:05:16] 2025-07-27 11:04:38,247 | INFO     | preparing for final server update for job 6745967261 in state='finished'
[2025-07-27 07:05:16] 2025-07-27 11:04:38,248 | INFO     | this job has now completed (state=finished)
[2025-07-27 07:05:16] 2025-07-27 11:04:38,248 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 07:05:16] 2025-07-27 11:04:38,248 | INFO     | log transfer has been attempted: DONE
[2025-07-27 07:05:16] 2025-07-27 11:04:38,249 | INFO     | job 6745967261 has finished - writing final server update
[2025-07-27 07:05:16] 2025-07-27 11:04:38,249 | INFO     | total number of processed events: 400 (read)
[2025-07-27 07:05:16] 2025-07-27 11:04:38,250 | INFO     | executing command: lscpu
[2025-07-27 07:05:16] 2025-07-27 11:04:38,311 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 07:05:16] 2025-07-27 11:04:39,174 | WARNING  | process 2057826 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 07:05:16] 2025-07-27 11:04:39,175 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745967261/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 07:05:16] 2025-07-27 11:04:39,437 | INFO     | number of running child processes to parent process 2057826: 1
[2025-07-27 07:05:16] 2025-07-27 11:04:39,437 | INFO     | maximum number of monitored processes: 6
[2025-07-27 07:05:16] 2025-07-27 11:04:41,940 | INFO     | monitor loop #350: job 0:6745967261 is in state 'finished'
[2025-07-27 07:05:16] 2025-07-27 11:04:41,940 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 07:05:16] 2025-07-27 11:04:43,185 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 07:05:16] 2025-07-27 11:04:43,190 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2741.308535714285
[2025-07-27 07:05:16] 2025-07-27 11:04:43,199 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745967261/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 07:05:16] 2025-07-27 11:04:43,200 | INFO     | extracted standard info from prmon json
[2025-07-27 07:05:16] 2025-07-27 11:04:43,201 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 07:05:16] 2025-07-27 11:04:43,201 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 07:05:16] 2025-07-27 11:04:43,201 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 07:05:16] 2025-07-27 11:04:43,201 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 07:05:16] 2025-07-27 11:04:43,202 | INFO     | fitting pss+swap vs Time
[2025-07-27 07:05:16] 2025-07-27 11:04:43,203 | INFO     | sum of square deviations: 110960220.0
[2025-07-27 07:05:16] 2025-07-27 11:04:43,203 | INFO     | sum of deviations: -5010256289.0
[2025-07-27 07:05:16] 2025-07-27 11:04:43,203 | INFO     | mean x: 1753612008.0
[2025-07-27 07:05:16] 2025-07-27 11:04:43,203 | INFO     | mean y: 2438353.4507042253
[2025-07-27 07:05:16] 2025-07-27 11:04:43,203 | INFO     | -- intersect: 79184379336.87628
[2025-07-27 07:05:16] 2025-07-27 11:04:43,204 | INFO     | intersect: 79184379336.87628
[2025-07-27 07:05:16] 2025-07-27 11:04:43,204 | INFO     | chi2: 0.20380844757692282
[2025-07-27 07:05:16] 2025-07-27 11:04:43,204 | INFO     | -- intersect: 79184379336.87628
[2025-07-27 07:05:16] 2025-07-27 11:04:43,204 | INFO     | current memory leak: -45.15 B/s (using 71 data points, chi2=0.20)
[2025-07-27 07:05:16] 2025-07-27 11:04:43,204 | INFO     | could have reported an average CPU frequency of 2720 MHz (6 samples)
[2025-07-27 07:05:16] 2025-07-27 11:04:43,205 | INFO     | ..............................
[2025-07-27 07:05:16] 2025-07-27 11:04:43,205 | INFO     | . Timing measurements:
[2025-07-27 07:05:16] 2025-07-27 11:04:43,205 | INFO     | . get job = 0 s
[2025-07-27 07:05:16] 2025-07-27 11:04:43,205 | INFO     | . initial setup = 3 s
[2025-07-27 07:05:16] 2025-07-27 11:04:43,205 | INFO     | . payload setup = 7 s
[2025-07-27 07:05:16] 2025-07-27 11:04:43,205 | INFO     | . stage-in = 0 s
[2025-07-27 07:05:16] 2025-07-27 11:04:43,205 | INFO     | . payload execution = 4708 s
[2025-07-27 07:05:16] 2025-07-27 11:04:43,205 | INFO     | . stage-out = 0 s
[2025-07-27 07:05:16] 2025-07-27 11:04:43,205 | INFO     | . log creation = 0 s
[2025-07-27 07:05:16] 2025-07-27 11:04:43,205 | INFO     | ..............................
[2025-07-27 07:05:16] 2025-07-27 11:04:43,581 | INFO     | 
[2025-07-27 07:05:16] 2025-07-27 11:04:43,581 | INFO     | job summary report
[2025-07-27 07:05:16] 2025-07-27 11:04:43,581 | INFO     | --------------------------------------------------
[2025-07-27 07:05:16] 2025-07-27 11:04:43,581 | INFO     | PanDA job id: 6745967261
[2025-07-27 07:05:16] 2025-07-27 11:04:43,581 | INFO     | task id: 45759557
[2025-07-27 07:05:16] 2025-07-27 11:04:43,581 | INFO     | errors: (none)
[2025-07-27 07:05:16] 2025-07-27 11:04:43,582 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 07:05:16] 2025-07-27 11:04:43,582 | INFO     | pilot state: finished 
[2025-07-27 07:05:16] 2025-07-27 11:04:43,582 | INFO     | transexitcode: 0
[2025-07-27 07:05:16] 2025-07-27 11:04:43,582 | INFO     | exeerrorcode: 0
[2025-07-27 07:05:16] 2025-07-27 11:04:43,582 | INFO     | exeerrordiag: 
[2025-07-27 07:05:16] 2025-07-27 11:04:43,582 | INFO     | exitcode: 0
[2025-07-27 07:05:16] 2025-07-27 11:04:43,582 | INFO     | exitmsg: OK
[2025-07-27 07:05:16] 2025-07-27 11:04:43,582 | INFO     | cpuconsumptiontime: 49995 s
[2025-07-27 07:05:16] 2025-07-27 11:04:43,582 | INFO     | nevents: 400
[2025-07-27 07:05:16] 2025-07-27 11:04:43,582 | INFO     | neventsw: 0
[2025-07-27 07:05:16] 2025-07-27 11:04:43,582 | INFO     | pid: 2057826
[2025-07-27 07:05:16] 2025-07-27 11:04:43,582 | INFO     | pgrp: 2057826
[2025-07-27 07:05:16] 2025-07-27 11:04:43,582 | INFO     | corecount: 12
[2025-07-27 07:05:16] 2025-07-27 11:04:43,582 | INFO     | event service: False
[2025-07-27 07:05:16] 2025-07-27 11:04:43,582 | INFO     | sizes: {0: 2397249, 1: 2397448, 6: 2397710, 11: 2397738, 4720: 2423836, 4721: 2433018, 4728: 2433156}
[2025-07-27 07:05:16] 2025-07-27 11:04:43,582 | INFO     | --------------------------------------------------
[2025-07-27 07:05:16] 2025-07-27 11:04:43,582 | INFO     | 
[2025-07-27 07:05:16] 2025-07-27 11:04:43,583 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 07:05:16] 2025-07-27 11:04:43,605 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 07:05:16] 2025-07-27 11:04:43,605 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 07:05:16] 2025-07-27 11:04:43,606 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 07:05:16] 2025-07-27 11:04:43,606 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 07:05:16] 2025-07-27 11:04:43,606 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 07:05:16] 2025-07-27 11:04:43,606 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 07:05:16] 2025-07-27 11:04:43,606 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 07:05:16] 2025-07-27 11:04:43,606 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 07:05:16] 2025-07-27 11:04:43,606 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 07:05:16] 2025-07-27 11:04:43,606 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 07:05:16] 2025-07-27 11:04:43,606 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 07:05:16] 2025-07-27 11:04:43,606 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 07:05:16] 2025-07-27 11:04:43,606 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 07:05:16] 2025-07-27 11:04:43,606 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 07:05:16] 2025-07-27 11:04:43,606 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 07:05:16] 2025-07-27 11:04:43,607 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 07:05:16] 2025-07-27 11:04:43,607 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 07:05:16] 2025-07-27 11:04:43,607 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 07:05:16] 2025-07-27 11:04:43,607 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 07:05:16] 2025-07-27 11:04:43,607 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 07:05:16] 2025-07-27 11:04:43,607 | INFO     | job 6745967261 has completed (purged errors)
[2025-07-27 07:05:16] 2025-07-27 11:04:43,607 | INFO     | overall cleanup function is called
[2025-07-27 07:05:16] 2025-07-27 11:04:44,615 | INFO     | --- collectZombieJob: --- 10, [2057826]
[2025-07-27 07:05:16] 2025-07-27 11:04:44,615 | INFO     | zombie collector waiting for pid 2057826
[2025-07-27 07:05:16] 2025-07-27 11:04:44,615 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 07:05:16] 2025-07-27 11:04:44,615 | INFO     | collected zombie processes
[2025-07-27 07:05:16] 2025-07-27 11:04:44,615 | INFO     | will attempt to kill all subprocesses of pid=2057826
[2025-07-27 07:05:16] 2025-07-27 11:04:44,884 | INFO     | process IDs to be killed: [2057826] (in reverse order)
[2025-07-27 07:05:16] 2025-07-27 11:04:44,988 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 07:05:16] 2025-07-27 11:04:44,989 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 07:05:16] 2025-07-27 11:04:45,001 | INFO     | did not find any defunct processes belonging to 2057826
[2025-07-27 07:05:16] 2025-07-27 11:04:45,012 | INFO     | did not find any defunct processes belonging to 2057826
[2025-07-27 07:05:16] 2025-07-27 11:04:45,012 | INFO     | ready for new job
[2025-07-27 07:05:16] 2025-07-27 11:04:45,013 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 07:05:16] 2025-07-27 11:04:45,016 | INFO     | ***************************************
[2025-07-27 07:05:16] 2025-07-27 11:04:45,016 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 07:05:16] 2025-07-27 11:04:45,016 | INFO     | ***************************************
[2025-07-27 07:05:16] 2025-07-27 11:04:45,016 | INFO     | 
[2025-07-27 07:05:16] 2025-07-27 11:04:45,031 | INFO     | architecture information:
[2025-07-27 07:05:16] 2025-07-27 11:04:45,032 | INFO     | executing command: cat /etc/os-release
[2025-07-27 07:05:16] 2025-07-27 11:04:45,048 | INFO     | cat /etc/os-release:
[2025-07-27 07:05:16] NAME="CentOS Linux"
[2025-07-27 07:05:16] VERSION="7 (Core)"
[2025-07-27 07:05:16] ID="centos"
[2025-07-27 07:05:16] ID_LIKE="rhel fedora"
[2025-07-27 07:05:16] VERSION_ID="7"
[2025-07-27 07:05:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 07:05:16] ANSI_COLOR="0;31"
[2025-07-27 07:05:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 07:05:16] HOME_URL="https://www.centos.org/"
[2025-07-27 07:05:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 07:05:16] 
[2025-07-27 07:05:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 07:05:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 07:05:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 07:05:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 07:05:16] 
[2025-07-27 07:05:16] 2025-07-27 11:04:45,049 | INFO     | ***************************************
[2025-07-27 07:05:16] 2025-07-27 11:04:45,552 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 07:05:16] 2025-07-27 11:04:45,571 | INFO     | sufficient remaining disk space (76288098304 B)
[2025-07-27 07:05:16] 2025-07-27 11:04:45,571 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 07:05:16] 2025-07-27 11:04:45,571 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 07:05:16] 2025-07-27 11:04:45,571 | INFO     | update_server=False
[2025-07-27 07:05:16] 2025-07-27 11:04:45,571 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 07:05:16] 2025-07-27 11:04:45,572 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 07:05:16] 2025-07-27 11:04:45,572 | INFO     | aborting loop
[2025-07-27 07:05:16] 2025-07-27 11:04:46,301 | INFO     | all payload control threads have been joined
[2025-07-27 07:05:16] 2025-07-27 11:04:46,507 | INFO     | all data control threads have been joined
[2025-07-27 07:05:16] 2025-07-27 11:04:46,523 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 07:05:16] 2025-07-27 11:04:46,577 | INFO     | [job] job monitor thread has finished
[2025-07-27 07:05:16] 2025-07-27 11:04:46,577 | INFO     | [job] retrieve thread has finished
[2025-07-27 07:05:16] 2025-07-27 11:04:46,595 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 07:05:16] 2025-07-27 11:04:46,605 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 07:05:16] 2025-07-27 11:04:46,612 | INFO     | [payload] failed_post thread has finished
[2025-07-27 07:05:16] 2025-07-27 11:04:46,693 | INFO     | all job control threads have been joined
[2025-07-27 07:05:16] 2025-07-27 11:04:47,306 | INFO     | [payload] control thread has finished
[2025-07-27 07:05:16] 2025-07-27 11:04:47,358 | INFO     | [data] copytool_in thread has finished
[2025-07-27 07:05:16] 2025-07-27 11:04:47,369 | INFO     | [payload] validate_post thread has finished
[2025-07-27 07:05:16] 2025-07-27 11:04:47,512 | INFO     | [data] control thread has finished
[2025-07-27 07:05:16] 2025-07-27 11:04:47,616 | INFO     | [job] validate thread has finished
[2025-07-27 07:05:16] 2025-07-27 11:04:47,668 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 07:05:16] 2025-07-27 11:04:47,698 | INFO     | [job] control thread has finished
[2025-07-27 07:05:16] 2025-07-27 11:04:47,837 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 07:05:16] 2025-07-27 11:04:48,302 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 07:05:16] 2025-07-27 11:04:48,528 | INFO     | [data] copytool_out thread has finished
[2025-07-27 07:05:16] 2025-07-27 11:04:49,307 | INFO     | [job] queue monitor thread has finished
[2025-07-27 07:05:16] 2025-07-27 11:04:50,601 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 07:05:16] 2025-07-27 11:04:56,200 | INFO     | job.realtimelogging is not enabled
[2025-07-27 07:05:16] 2025-07-27 11:04:57,205 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 07:05:16] 2025-07-27 11:04:58,441 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140426210486080)>', '<ExcThread(monitor, started 140425406957312)>']
[2025-07-27 07:05:16] 2025-07-27 11:05:03,466 | INFO     | all workflow threads have been joined
[2025-07-27 07:05:16] 2025-07-27 11:05:03,466 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 07:05:16] 2025-07-27 11:05:03,467 | INFO     | traces error code: 0
[2025-07-27 07:05:16] 2025-07-27 11:05:03,467 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 07:05:16] 2025-07-27 11:05:15,712 | INFO     | PID=2045974 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 07:05:16] 2025-07-27 11:05:15,713 | INFO     | .. there are 10 such processes running
[2025-07-27 07:05:16] 2025-07-27 11:05:15,713 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 07:05:16] 2025-07-27 11:05:15,713 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 07:05:16] 2025-07-27 11:05:15,713 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 07:05:16] 2025-07-27 11:05:15,713 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 07:05:16] 2025-07-27 11:05:15,714 | INFO     | [monitor] control thread has ended
[2025-07-27 07:05:16] 2025-07-27 11:05:15,894 [wrapper] ==== pilot stdout END ====
[2025-07-27 07:05:16] 2025-07-27 11:05:15,897 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 07:05:16] 2025-07-27 11:05:15,900 [wrapper] pilotpid: 2045974
[2025-07-27 07:05:16] 2025-07-27 11:05:15,903 [wrapper] Pilot exit status: 0
[2025-07-27 07:05:16] 2025-07-27 11:05:15,918 [wrapper] pandaids: 6745967261
[2025-07-27 07:05:16] 2025-07-27 11:05:15,980 [wrapper] cleanup supervisor_pilot 2292587 2045975
[2025-07-27 07:05:16] 2025-07-27 11:05:15,985 [wrapper] Test setup, not cleaning
[2025-07-27 07:05:16] 2025-07-27 11:05:15,990 [wrapper] apfmon messages muted
[2025-07-27 07:05:16] 2025-07-27 11:05:15,993 [wrapper] ==== wrapper stdout END ====
[2025-07-27 07:05:16] 2025-07-27 11:05:15,997 [wrapper] ==== wrapper stderr END ====
[2025-07-27 07:05:16]  *** Error codes and diagnostics ***
[2025-07-27 07:05:16]     "exeErrorCode": 0,
[2025-07-27 07:05:16]     "exeErrorDiag": "",
[2025-07-27 07:05:16]     "pilotErrorCode": 0,
[2025-07-27 07:05:16]     "pilotErrorDiag": "",
[2025-07-27 07:05:16]  *** Listing of results directory ***
[2025-07-27 07:05:16] total 412504
[2025-07-27 07:05:16] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 22:38 pilot3.tar.gz
[2025-07-27 07:05:16] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 23:10 queuedata.json
[2025-07-27 07:05:16] -rwx------. 1 boincer umatlas     36292 Jul 26 23:11 runpilot2-wrapper.sh
[2025-07-27 07:05:16] -rw-r--r--. 1 boincer umatlas       100 Jul 27 05:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 07:05:16] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 05:45 run_atlas
[2025-07-27 07:05:16] -rw-r--r--. 1 boincer umatlas       105 Jul 27 05:45 job.xml
[2025-07-27 07:05:16] -rw-r--r--. 2 boincer umatlas 242786384 Jul 27 05:45 EVNT.45759552._000005.pool.root.1
[2025-07-27 07:05:16] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 05:45 start_atlas.sh
[2025-07-27 07:05:16] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 05:45 shared
[2025-07-27 07:05:16] -rw-r--r--. 2 boincer umatlas    542886 Jul 27 05:45 input.tar.gz
[2025-07-27 07:05:16] -rw-r--r--. 1 boincer umatlas         0 Jul 27 05:45 boinc_lockfile
[2025-07-27 07:05:16] -rw-r--r--. 1 boincer umatlas      2561 Jul 27 05:45 pandaJob.out
[2025-07-27 07:05:16] -rw-------. 1 boincer umatlas    980125 Jul 27 05:45 agis_schedconf.cvmfs.json
[2025-07-27 07:05:16] -rw-------. 1 boincer umatlas   1593052 Jul 27 05:45 agis_ddmendpoints.agis.ALL.json
[2025-07-27 07:05:16] drwx------. 4 boincer umatlas      4096 Jul 27 05:45 pilot3
[2025-07-27 07:05:16] -rw-r--r--. 1 boincer umatlas      6842 Jul 27 07:00 init_data.xml
[2025-07-27 07:05:16] -rw-------. 1 boincer umatlas 174085755 Jul 27 07:04 HITS.45759557._000105.pool.root.1
[2025-07-27 07:05:16] -rw-r--r--. 1 boincer umatlas       530 Jul 27 07:04 boinc_task_state.xml
[2025-07-27 07:05:16] -rw-------. 1 boincer umatlas        95 Jul 27 07:04 pilot_heartbeat.json
[2025-07-27 07:05:16] -rw-------. 1 boincer umatlas      1032 Jul 27 07:04 memory_monitor_summary.json
[2025-07-27 07:05:16] -rw-------. 1 boincer umatlas    356029 Jul 27 07:04 log.45759557._000105.job.log.tgz.1
[2025-07-27 07:05:16] -rw-------. 1 boincer umatlas      7807 Jul 27 07:04 heartbeat.json
[2025-07-27 07:05:16] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 07:05 boinc_mmap_file
[2025-07-27 07:05:16] -rw-r--r--. 1 boincer umatlas        27 Jul 27 07:05 wrapper_checkpoint.txt
[2025-07-27 07:05:16] -rw-------. 1 boincer umatlas       823 Jul 27 07:05 pilotlog.txt
[2025-07-27 07:05:16] -rw-------. 1 boincer umatlas    469781 Jul 27 07:05 log.45759557._000105.job.log.1
[2025-07-27 07:05:16] -rw-------. 1 boincer umatlas       357 Jul 27 07:05 output.list
[2025-07-27 07:05:16] -rw-r--r--. 1 boincer umatlas       620 Jul 27 07:05 runtime_log
[2025-07-27 07:05:16] -rw-------. 1 boincer umatlas    849920 Jul 27 07:05 result.tar.gz
[2025-07-27 07:05:16] -rw-r--r--. 1 boincer umatlas      8667 Jul 27 07:05 runtime_log.err
[2025-07-27 07:05:16] -rw-------. 1 boincer umatlas       655 Jul 27 07:05 l4HMDmmy6z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmn3TLDmApCEhn.diag
[2025-07-27 07:05:16] -rw-r--r--. 1 boincer umatlas     21663 Jul 27 07:05 stderr.txt
[2025-07-27 07:05:16] HITS file was successfully produced:
[2025-07-27 07:05:16] -rw-------. 1 boincer umatlas 174085755 Jul 27 07:04 shared/HITS.pool.root.1
[2025-07-27 07:05:16]  *** Contents of shared directory: ***
[2025-07-27 07:05:16] total 408492
[2025-07-27 07:05:16] -rw-r--r--. 2 boincer umatlas 242786384 Jul 27 05:45 ATLAS.root_0
[2025-07-27 07:05:16] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 05:45 start_atlas.sh
[2025-07-27 07:05:16] -rw-r--r--. 2 boincer umatlas    542886 Jul 27 05:45 input.tar.gz
[2025-07-27 07:05:16] -rw-------. 1 boincer umatlas 174085755 Jul 27 07:04 HITS.pool.root.1
[2025-07-27 07:05:16] -rw-------. 1 boincer umatlas    849920 Jul 27 07:05 result.tar.gz
07:05:17 (2040489): run_atlas exited; CPU time 50091.744029
07:05:17 (2040489): called boinc_finish(0)

</stderr_txt>
]]>

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