Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
03:54:59 (25746): wrapper (7.7.26015): starting
03:54:59 (25746): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 03:54:59] Arguments: --nthreads 12
[2025-07-27 03:54:59] Threads: 12
[2025-07-27 03:54:59] Checking for CVMFS
[2025-07-27 03:54:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 03:55:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 03:55:00] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 03:55:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 03:55:00] 2.11.2.0 2998 111682 102724 148804 0 57 14604019 20275201 1 130560 0 38123776 99.971 9706525 10994 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 03:55:00] CVMFS is ok
[2025-07-27 03:55:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 03:55:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 03:55:00] Further information can be found at the LHC@home message board.
[2025-07-27 03:55:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 03:55:00] Checking for apptainer binary...
[2025-07-27 03:55:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 03:55:00] Running /usr/bin/apptainer --version
[2025-07-27 03:55:00] apptainer version 1.3.2-1.el7
[2025-07-27 03:55:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 03:55:01] c-205-25.aglt2.org
[2025-07-27 03:55:01] apptainer works
[2025-07-27 03:55:01] Set ATHENA_PROC_NUMBER=12
[2025-07-27 03:55:01] Set ATHENA_CORE_NUMBER=12
[2025-07-27 03:55:01] Starting ATLAS job with PandaID=6745966349
[2025-07-27 03:55:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 05:29:25]  *** The last 200 lines of the pilot log: ***
[2025-07-27 05:29:25]  lfn=log.45758845._000093.job.log.tgz.1
[2025-07-27 05:29:25]  mtime=0
[2025-07-27 05:29:25]  protocol_id=None
[2025-07-27 05:29:25]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 05:29:25]  replicas=None
[2025-07-27 05:29:25]  scope=mc23_13p6TeV
[2025-07-27 05:29:25]  status=None
[2025-07-27 05:29:25]  status_code=0
[2025-07-27 05:29:25]  storage_token=
[2025-07-27 05:29:25]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745966349/log.45758845._000093.job.log.tgz.1
[2025-07-27 05:29:25]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d5/6e/log.45758845._000093.job.log.tgz.1
[2025-07-27 05:29:25]  workdir=None
[2025-07-27 05:29:25] ]
[2025-07-27 05:29:25] 2025-07-27 09:28:47,075 | INFO     | transferring file log.45758845._000093.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745966349/log.45758845._000093.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 05:29:25] 2025-07-27 09:28:47,076 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745966349/log.45758845._000093.job.log.tgz.1 /tmp/boinchome/slots/0/log.45758845._000093.job
[2025-07-27 05:29:25] 2025-07-27 09:28:47,085 | INFO     | number of running child processes to parent process 3761: 1
[2025-07-27 05:29:25] 2025-07-27 09:28:47,085 | INFO     | maximum number of monitored processes: 6
[2025-07-27 05:29:25] 2025-07-27 09:28:47,097 | INFO     | adding to output.list: log.45758845._000093.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d5/6e/log.45758845._000093.job.log.tg
[2025-07-27 05:29:25] 2025-07-27 09:28:47,098 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 05:29:25] 2025-07-27 09:28:47,098 | INFO     | summary of transferred files:
[2025-07-27 05:29:25] 2025-07-27 09:28:47,098 | INFO     |  -- lfn=log.45758845._000093.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 05:29:25] 2025-07-27 09:28:47,098 | INFO     | stage-out finished correctly
[2025-07-27 05:29:25] 2025-07-27 09:28:47,546 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 05:29:25] 2025-07-27 09:28:48,504 | INFO     | job 6745966349 has state=finished
[2025-07-27 05:29:25] 2025-07-27 09:28:48,505 | INFO     | preparing for final server update for job 6745966349 in state='finished'
[2025-07-27 05:29:25] 2025-07-27 09:28:48,506 | INFO     | this job has now completed (state=finished)
[2025-07-27 05:29:25] 2025-07-27 09:28:48,506 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 05:29:25] 2025-07-27 09:28:48,507 | INFO     | log transfer has been attempted: DONE
[2025-07-27 05:29:25] 2025-07-27 09:28:48,507 | INFO     | job 6745966349 has finished - writing final server update
[2025-07-27 05:29:25] 2025-07-27 09:28:48,507 | INFO     | total number of processed events: 400 (read)
[2025-07-27 05:29:25] 2025-07-27 09:28:48,509 | INFO     | executing command: lscpu
[2025-07-27 05:29:25] 2025-07-27 09:28:48,535 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 05:29:25] 2025-07-27 09:28:49,589 | INFO     | monitor loop #418: job 0:6745966349 is in state 'finished'
[2025-07-27 05:29:25] 2025-07-27 09:28:49,589 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 05:29:25] 2025-07-27 09:28:52,092 | INFO     | monitor loop #419: job 0:6745966349 is in state 'finished'
[2025-07-27 05:29:25] 2025-07-27 09:28:52,092 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 05:29:25] 2025-07-27 09:28:53,208 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-27 05:29:25] 2025-07-27 09:28:53,212 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1740.1666666666667
[2025-07-27 05:29:25] 2025-07-27 09:28:53,215 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745966349/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 05:29:25] 2025-07-27 09:28:53,216 | INFO     | extracted standard info from prmon json
[2025-07-27 05:29:25] 2025-07-27 09:28:53,216 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 05:29:25] 2025-07-27 09:28:53,216 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 05:29:25] 2025-07-27 09:28:53,216 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 05:29:25] 2025-07-27 09:28:53,216 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 05:29:25] 2025-07-27 09:28:53,218 | INFO     | fitting pss+swap vs Time
[2025-07-27 05:29:25] 2025-07-27 09:28:53,219 | INFO     | sum of square deviations: 190403570.0
[2025-07-27 05:29:25] 2025-07-27 09:28:53,219 | INFO     | sum of deviations: -5385760760.000002
[2025-07-27 05:29:25] 2025-07-27 09:28:53,219 | INFO     | mean x: 1753605812.0
[2025-07-27 05:29:25] 2025-07-27 09:28:53,219 | INFO     | mean y: 2731951.776470588
[2025-07-27 05:29:25] 2025-07-27 09:28:53,220 | INFO     | -- intersect: 49605275490.10162
[2025-07-27 05:29:25] 2025-07-27 09:28:53,220 | INFO     | intersect: 49605275490.10162
[2025-07-27 05:29:25] 2025-07-27 09:28:53,220 | INFO     | chi2: 0.08627604070067092
[2025-07-27 05:29:25] 2025-07-27 09:28:53,220 | INFO     | -- intersect: 49605275490.10162
[2025-07-27 05:29:25] 2025-07-27 09:28:53,221 | INFO     | current memory leak: -28.29 B/s (using 85 data points, chi2=0.09)
[2025-07-27 05:29:25] 2025-07-27 09:28:53,221 | INFO     | could have reported an average CPU frequency of 2109 MHz (7 samples)
[2025-07-27 05:29:25] 2025-07-27 09:28:53,221 | INFO     | ..............................
[2025-07-27 05:29:25] 2025-07-27 09:28:53,221 | INFO     | . Timing measurements:
[2025-07-27 05:29:25] 2025-07-27 09:28:53,222 | INFO     | . get job = 0 s
[2025-07-27 05:29:25] 2025-07-27 09:28:53,222 | INFO     | . initial setup = 2 s
[2025-07-27 05:29:25] 2025-07-27 09:28:53,222 | INFO     | . payload setup = 9 s
[2025-07-27 05:29:25] 2025-07-27 09:28:53,222 | INFO     | . stage-in = 0 s
[2025-07-27 05:29:25] 2025-07-27 09:28:53,222 | INFO     | . payload execution = 5581 s
[2025-07-27 05:29:25] 2025-07-27 09:28:53,222 | INFO     | . stage-out = 0 s
[2025-07-27 05:29:25] 2025-07-27 09:28:53,222 | INFO     | . log creation = 0 s
[2025-07-27 05:29:25] 2025-07-27 09:28:53,222 | INFO     | ..............................
[2025-07-27 05:29:25] 2025-07-27 09:28:53,312 | INFO     | 
[2025-07-27 05:29:25] 2025-07-27 09:28:53,312 | INFO     | job summary report
[2025-07-27 05:29:25] 2025-07-27 09:28:53,312 | INFO     | --------------------------------------------------
[2025-07-27 05:29:25] 2025-07-27 09:28:53,312 | INFO     | PanDA job id: 6745966349
[2025-07-27 05:29:25] 2025-07-27 09:28:53,313 | INFO     | task id: 45758845
[2025-07-27 05:29:25] 2025-07-27 09:28:53,313 | INFO     | errors: (none)
[2025-07-27 05:29:25] 2025-07-27 09:28:53,313 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 05:29:25] 2025-07-27 09:28:53,313 | INFO     | pilot state: finished 
[2025-07-27 05:29:25] 2025-07-27 09:28:53,313 | INFO     | transexitcode: 0
[2025-07-27 05:29:25] 2025-07-27 09:28:53,314 | INFO     | exeerrorcode: 0
[2025-07-27 05:29:25] 2025-07-27 09:28:53,314 | INFO     | exeerrordiag: 
[2025-07-27 05:29:25] 2025-07-27 09:28:53,314 | INFO     | exitcode: 0
[2025-07-27 05:29:25] 2025-07-27 09:28:53,315 | INFO     | exitmsg: OK
[2025-07-27 05:29:25] 2025-07-27 09:28:53,315 | INFO     | cpuconsumptiontime: 61441 s
[2025-07-27 05:29:25] 2025-07-27 09:28:53,315 | INFO     | nevents: 400
[2025-07-27 05:29:25] 2025-07-27 09:28:53,315 | INFO     | neventsw: 0
[2025-07-27 05:29:25] 2025-07-27 09:28:53,315 | INFO     | pid: 3761
[2025-07-27 05:29:25] 2025-07-27 09:28:53,315 | INFO     | pgrp: 3761
[2025-07-27 05:29:25] 2025-07-27 09:28:53,316 | INFO     | corecount: 12
[2025-07-27 05:29:25] 2025-07-27 09:28:53,316 | INFO     | event service: False
[2025-07-27 05:29:25] 2025-07-27 09:28:53,316 | INFO     | sizes: {0: 2397292, 1: 2397491, 5: 2397753, 11: 2397809, 5595: 2424391, 5596: 2433389, 5597: 2433573, 5602: 2433767}
[2025-07-27 05:29:25] 2025-07-27 09:28:53,316 | INFO     | --------------------------------------------------
[2025-07-27 05:29:25] 2025-07-27 09:28:53,316 | INFO     | 
[2025-07-27 05:29:25] 2025-07-27 09:28:53,317 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 05:29:25] 2025-07-27 09:28:53,339 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 05:29:25] 2025-07-27 09:28:53,339 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 05:29:25] 2025-07-27 09:28:53,340 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 05:29:25] 2025-07-27 09:28:53,340 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 05:29:25] 2025-07-27 09:28:53,340 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 05:29:25] 2025-07-27 09:28:53,340 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 05:29:25] 2025-07-27 09:28:53,341 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 05:29:25] 2025-07-27 09:28:53,341 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 05:29:25] 2025-07-27 09:28:53,341 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 05:29:25] 2025-07-27 09:28:53,341 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 05:29:25] 2025-07-27 09:28:53,341 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 05:29:25] 2025-07-27 09:28:53,342 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 05:29:25] 2025-07-27 09:28:53,342 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 05:29:25] 2025-07-27 09:28:53,342 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 05:29:25] 2025-07-27 09:28:53,342 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 05:29:25] 2025-07-27 09:28:53,343 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 05:29:25] 2025-07-27 09:28:53,343 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 05:29:25] 2025-07-27 09:28:53,343 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 05:29:25] 2025-07-27 09:28:53,343 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 05:29:25] 2025-07-27 09:28:53,344 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 05:29:25] 2025-07-27 09:28:53,344 | INFO     | job 6745966349 has completed (purged errors)
[2025-07-27 05:29:25] 2025-07-27 09:28:53,344 | INFO     | overall cleanup function is called
[2025-07-27 05:29:25] 2025-07-27 09:28:53,442 | INFO     | PID=29449 has CPU usage=7.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-27 05:29:25] 2025-07-27 09:28:54,353 | INFO     | --- collectZombieJob: --- 10, [3761]
[2025-07-27 05:29:25] 2025-07-27 09:28:54,353 | INFO     | zombie collector waiting for pid 3761
[2025-07-27 05:29:25] 2025-07-27 09:28:54,354 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 05:29:25] 2025-07-27 09:28:54,354 | INFO     | collected zombie processes
[2025-07-27 05:29:25] 2025-07-27 09:28:54,354 | INFO     | will attempt to kill all subprocesses of pid=3761
[2025-07-27 05:29:25] 2025-07-27 09:28:54,447 | INFO     | process IDs to be killed: [3761] (in reverse order)
[2025-07-27 05:29:25] 2025-07-27 09:28:54,496 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 05:29:25] 2025-07-27 09:28:54,496 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 05:29:25] 2025-07-27 09:28:54,500 | INFO     | did not find any defunct processes belonging to 3761
[2025-07-27 05:29:25] 2025-07-27 09:28:54,503 | INFO     | did not find any defunct processes belonging to 3761
[2025-07-27 05:29:25] 2025-07-27 09:28:54,504 | INFO     | ready for new job
[2025-07-27 05:29:25] 2025-07-27 09:28:54,504 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 05:29:25] 2025-07-27 09:28:54,506 | INFO     | ***************************************
[2025-07-27 05:29:25] 2025-07-27 09:28:54,506 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 05:29:25] 2025-07-27 09:28:54,506 | INFO     | ***************************************
[2025-07-27 05:29:25] 2025-07-27 09:28:54,506 | INFO     | 
[2025-07-27 05:29:25] 2025-07-27 09:28:54,507 | INFO     | architecture information:
[2025-07-27 05:29:25] 2025-07-27 09:28:54,507 | INFO     | executing command: cat /etc/os-release
[2025-07-27 05:29:25] 2025-07-27 09:28:54,523 | INFO     | cat /etc/os-release:
[2025-07-27 05:29:25] NAME="CentOS Linux"
[2025-07-27 05:29:25] VERSION="7 (Core)"
[2025-07-27 05:29:25] ID="centos"
[2025-07-27 05:29:25] ID_LIKE="rhel fedora"
[2025-07-27 05:29:25] VERSION_ID="7"
[2025-07-27 05:29:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 05:29:25] ANSI_COLOR="0;31"
[2025-07-27 05:29:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 05:29:25] HOME_URL="https://www.centos.org/"
[2025-07-27 05:29:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 05:29:25] 
[2025-07-27 05:29:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 05:29:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 05:29:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 05:29:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 05:29:25] 
[2025-07-27 05:29:25] 2025-07-27 09:28:54,524 | INFO     | ***************************************
[2025-07-27 05:29:25] 2025-07-27 09:28:55,027 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 05:29:25] 2025-07-27 09:28:55,044 | INFO     | sufficient remaining disk space (29355933696 B)
[2025-07-27 05:29:25] 2025-07-27 09:28:55,044 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 05:29:25] 2025-07-27 09:28:55,045 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 05:29:25] 2025-07-27 09:28:55,045 | INFO     | update_server=False
[2025-07-27 05:29:25] 2025-07-27 09:28:55,045 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 05:29:25] 2025-07-27 09:28:55,046 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 05:29:25] 2025-07-27 09:28:55,202 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 05:29:25] 2025-07-27 09:28:55,599 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 05:29:25] 2025-07-27 09:28:55,599 | INFO     | aborting loop
[2025-07-27 05:29:25] 2025-07-27 09:28:55,716 | INFO     | all data control threads have been joined
[2025-07-27 05:29:25] 2025-07-27 09:28:56,051 | INFO     | [job] retrieve thread has finished
[2025-07-27 05:29:25] 2025-07-27 09:28:56,051 | INFO     | [job] queue monitor thread has finished
[2025-07-27 05:29:25] 2025-07-27 09:28:56,178 | INFO     | [payload] failed_post thread has finished
[2025-07-27 05:29:25] 2025-07-27 09:28:56,305 | INFO     | all payload control threads have been joined
[2025-07-27 05:29:25] 2025-07-27 09:28:56,473 | INFO     | all job control threads have been joined
[2025-07-27 05:29:25] 2025-07-27 09:28:56,518 | INFO     | [job] validate thread has finished
[2025-07-27 05:29:25] 2025-07-27 09:28:56,547 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 05:29:25] 2025-07-27 09:28:56,604 | INFO     | [job] job monitor thread has finished
[2025-07-27 05:29:25] 2025-07-27 09:28:56,636 | INFO     | [payload] validate_post thread has finished
[2025-07-27 05:29:25] 2025-07-27 09:28:56,718 | INFO     | [data] control thread has finished
[2025-07-27 05:29:25] 2025-07-27 09:28:57,003 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 05:29:25] 2025-07-27 09:28:57,109 | INFO     | [data] copytool_in thread has finished
[2025-07-27 05:29:25] 2025-07-27 09:28:57,113 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 05:29:25] 2025-07-27 09:28:57,208 | INFO     | [data] copytool_out thread has finished
[2025-07-27 05:29:25] 2025-07-27 09:28:57,311 | INFO     | [payload] control thread has finished
[2025-07-27 05:29:25] 2025-07-27 09:28:57,478 | INFO     | [job] control thread has finished
[2025-07-27 05:29:25] 2025-07-27 09:28:58,149 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 05:29:25] 2025-07-27 09:29:02,150 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 05:29:25] 2025-07-27 09:29:05,733 | INFO     | job.realtimelogging is not enabled
[2025-07-27 05:29:25] 2025-07-27 09:29:06,734 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 05:29:25] 2025-07-27 09:29:08,540 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139731523254080)>', '<ExcThread(monitor, started 139731207689984)>']
[2025-07-27 05:29:25] 2025-07-27 09:29:13,566 | INFO     | all workflow threads have been joined
[2025-07-27 05:29:25] 2025-07-27 09:29:13,566 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 05:29:25] 2025-07-27 09:29:13,577 | INFO     | traces error code: 0
[2025-07-27 05:29:25] 2025-07-27 09:29:13,578 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 05:29:25] 2025-07-27 09:29:25,615 | INFO     | PID=29449 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-27 05:29:25] 2025-07-27 09:29:25,615 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 05:29:25] 2025-07-27 09:29:25,615 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 05:29:25] 2025-07-27 09:29:25,615 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 05:29:25] 2025-07-27 09:29:25,616 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 05:29:25] 2025-07-27 09:29:25,616 | INFO     | [monitor] control thread has ended
[2025-07-27 05:29:25] 2025-07-27 09:29:25,718 [wrapper] ==== pilot stdout END ====
[2025-07-27 05:29:25] 2025-07-27 09:29:25,722 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 05:29:25] 2025-07-27 09:29:25,725 [wrapper] pilotpid: 29449
[2025-07-27 05:29:25] 2025-07-27 09:29:25,729 [wrapper] Pilot exit status: 0
[2025-07-27 05:29:25] 2025-07-27 09:29:25,744 [wrapper] pandaids: 6745966349
[2025-07-27 05:29:25] 2025-07-27 09:29:25,783 [wrapper] cleanup supervisor_pilot  3112 29450
[2025-07-27 05:29:25] 2025-07-27 09:29:25,788 [wrapper] Test setup, not cleaning
[2025-07-27 05:29:25] 2025-07-27 09:29:25,792 [wrapper] apfmon messages muted
[2025-07-27 05:29:25] 2025-07-27 09:29:25,795 [wrapper] ==== wrapper stdout END ====
[2025-07-27 05:29:25] 2025-07-27 09:29:25,799 [wrapper] ==== wrapper stderr END ====
[2025-07-27 05:29:25]  *** Error codes and diagnostics ***
[2025-07-27 05:29:25]     "exeErrorCode": 0,
[2025-07-27 05:29:25]     "exeErrorDiag": "",
[2025-07-27 05:29:25]     "pilotErrorCode": 0,
[2025-07-27 05:29:25]     "pilotErrorDiag": "",
[2025-07-27 05:29:25]  *** Listing of results directory ***
[2025-07-27 05:29:25] total 416236
[2025-07-27 05:29:25] -rw-r--r-- 1 boincer umatlas    530466 Jul 26 22:38 pilot3.tar.gz
[2025-07-27 05:29:25] -rwx------ 1 boincer umatlas     36292 Jul 26 23:06 runpilot2-wrapper.sh
[2025-07-27 05:29:25] -rw-r--r-- 1 boincer umatlas      5112 Jul 26 23:06 queuedata.json
[2025-07-27 05:29:25] -rw-r--r-- 1 boincer umatlas       100 Jul 27 03:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 05:29:25] -rwxr-xr-x 1 boincer umatlas      7986 Jul 27 03:54 run_atlas
[2025-07-27 05:29:25] -rw-r--r-- 1 boincer umatlas       105 Jul 27 03:54 job.xml
[2025-07-27 05:29:25] -rw-r--r-- 2 boincer umatlas 241824194 Jul 27 03:54 EVNT.45758843._000004.pool.root.1
[2025-07-27 05:29:25] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 03:54 start_atlas.sh
[2025-07-27 05:29:25] drwxrwx--x 2 boincer umatlas      4096 Jul 27 03:54 shared
[2025-07-27 05:29:25] -rw-r--r-- 2 boincer umatlas    542875 Jul 27 03:54 input.tar.gz
[2025-07-27 05:29:25] -rw-r--r-- 1 boincer umatlas         0 Jul 27 03:54 boinc_lockfile
[2025-07-27 05:29:25] -rw-r--r-- 1 boincer umatlas      2556 Jul 27 03:55 pandaJob.out
[2025-07-27 05:29:25] -rw------- 1 boincer umatlas    980125 Jul 27 03:55 agis_schedconf.cvmfs.json
[2025-07-27 05:29:25] -rw------- 1 boincer umatlas   1593052 Jul 27 03:55 agis_ddmendpoints.agis.ALL.json
[2025-07-27 05:29:25] drwx------ 4 boincer umatlas      4096 Jul 27 03:55 pilot3
[2025-07-27 05:29:25] -rw-r--r-- 1 boincer umatlas      5868 Jul 27 05:19 init_data.xml
[2025-07-27 05:29:25] -rw------- 1 boincer umatlas 178701584 Jul 27 05:28 HITS.45758845._000093.pool.root.1
[2025-07-27 05:29:25] -rw-r--r-- 1 boincer umatlas       529 Jul 27 05:28 boinc_task_state.xml
[2025-07-27 05:29:25] -rw------- 1 boincer umatlas        95 Jul 27 05:28 pilot_heartbeat.json
[2025-07-27 05:29:25] -rw------- 1 boincer umatlas      1063 Jul 27 05:28 memory_monitor_summary.json
[2025-07-27 05:29:25] -rw------- 1 boincer umatlas    382832 Jul 27 05:28 log.45758845._000093.job.log.tgz.1
[2025-07-27 05:29:25] -rw------- 1 boincer umatlas      7843 Jul 27 05:28 heartbeat.json
[2025-07-27 05:29:25] -rw-r--r-- 1 boincer umatlas      8192 Jul 27 05:29 boinc_mmap_file
[2025-07-27 05:29:25] -rw-r--r-- 1 boincer umatlas        27 Jul 27 05:29 wrapper_checkpoint.txt
[2025-07-27 05:29:25] -rw------- 1 boincer umatlas       745 Jul 27 05:29 pilotlog.txt
[2025-07-27 05:29:25] -rw------- 1 boincer umatlas    528113 Jul 27 05:29 log.45758845._000093.job.log.1
[2025-07-27 05:29:25] -rw------- 1 boincer umatlas       357 Jul 27 05:29 output.list
[2025-07-27 05:29:25] -rw-r--r-- 1 boincer umatlas       620 Jul 27 05:29 runtime_log
[2025-07-27 05:29:25] -rw------- 1 boincer umatlas    931840 Jul 27 05:29 result.tar.gz
[2025-07-27 05:29:25] -rw------- 1 boincer umatlas       659 Jul 27 05:29 ZMFNDmjt6z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmp1TLDm1qnq6m.diag
[2025-07-27 05:29:25] -rw-r--r-- 1 boincer umatlas      8662 Jul 27 05:29 runtime_log.err
[2025-07-27 05:29:25] -rw-r--r-- 1 boincer umatlas     21717 Jul 27 05:29 stderr.txt
[2025-07-27 05:29:25] HITS file was successfully produced:
[2025-07-27 05:29:25] -rw------- 1 boincer umatlas 178701584 Jul 27 05:28 shared/HITS.pool.root.1
[2025-07-27 05:29:25]  *** Contents of shared directory: ***
[2025-07-27 05:29:25] total 412140
[2025-07-27 05:29:25] -rw-r--r-- 2 boincer umatlas 241824194 Jul 27 03:54 ATLAS.root_0
[2025-07-27 05:29:25] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 03:54 start_atlas.sh
[2025-07-27 05:29:25] -rw-r--r-- 2 boincer umatlas    542875 Jul 27 03:54 input.tar.gz
[2025-07-27 05:29:25] -rw------- 1 boincer umatlas 178701584 Jul 27 05:28 HITS.pool.root.1
[2025-07-27 05:29:25] -rw------- 1 boincer umatlas    931840 Jul 27 05:29 result.tar.gz
05:29:27 (25746): run_atlas exited; CPU time 61398.858454
05:29:27 (25746): called boinc_finish(0)

</stderr_txt>
]]>

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