Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:28:15 (1304239): wrapper (7.7.26015): starting
05:28:15 (1304239): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 05:28:15] Arguments: --nthreads 12
[2025-07-27 05:28:15] Threads: 12
[2025-07-27 05:28:15] Checking for CVMFS
[2025-07-27 05:28:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 05:28:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 05:28:15] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 05:28:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 05:28:15] 2.12.6.0 2624825 18184 336812 148807 3 333 27554163 40960000 9022 16776704 0 56911743 99.791 50635846 31433 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 05:28:15] CVMFS is ok
[2025-07-27 05:28:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 05:28:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 05:28:15] Further information can be found at the LHC@home message board.
[2025-07-27 05:28:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 05:28:15] Checking for apptainer binary...
[2025-07-27 05:28:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 05:28:15] Running /usr/bin/apptainer --version
[2025-07-27 05:28:15] apptainer version 1.4.1-1.el9
[2025-07-27 05:28:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 05:28:15] c6-8-12-1.aglt2.org
[2025-07-27 05:28:15] apptainer works
[2025-07-27 05:28:15] Set ATHENA_PROC_NUMBER=12
[2025-07-27 05:28:15] Set ATHENA_CORE_NUMBER=12
[2025-07-27 05:28:15] Starting ATLAS job with PandaID=6745966258
[2025-07-27 05:28:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 07:07:06]  *** The last 200 lines of the pilot log: ***
[2025-07-27 07:07:06]  protocol_id=None
[2025-07-27 07:07:06]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 07:07:06]  replicas=None
[2025-07-27 07:07:06]  scope=mc23_13p6TeV
[2025-07-27 07:07:06]  status=None
[2025-07-27 07:07:06]  status_code=0
[2025-07-27 07:07:06]  storage_token=
[2025-07-27 07:07:06]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745966258/log.45758845._000002.job.log.tgz.1
[2025-07-27 07:07:06]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e5/2a/log.45758845._000002.job.log.tgz.1
[2025-07-27 07:07:06]  workdir=None
[2025-07-27 07:07:06] ]
[2025-07-27 07:07:06] 2025-07-27 11:06:22,916 | INFO     | transferring file log.45758845._000002.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745966258/log.45758845._000002.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 07:07:06] 2025-07-27 11:06:22,916 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745966258/log.45758845._000002.job.log.tgz.1 /tmp/boinchome/slots/0/log.45758845._000002.job
[2025-07-27 07:07:06] 2025-07-27 11:06:22,939 | INFO     | adding to output.list: log.45758845._000002.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e5/2a/log.45758845._000002.job.log.tg
[2025-07-27 07:07:06] 2025-07-27 11:06:22,940 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 07:07:06] 2025-07-27 11:06:22,941 | INFO     | summary of transferred files:
[2025-07-27 07:07:06] 2025-07-27 11:06:22,941 | INFO     |  -- lfn=log.45758845._000002.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 07:07:06] 2025-07-27 11:06:22,941 | INFO     | stage-out finished correctly
[2025-07-27 07:07:06] 2025-07-27 11:06:23,650 | INFO     | monitor loop #429: job 0:6745966258 is in state 'finished'
[2025-07-27 07:07:06] 2025-07-27 11:06:23,650 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 07:07:06] 2025-07-27 11:06:26,154 | INFO     | monitor loop #430: job 0:6745966258 is in state 'finished'
[2025-07-27 07:07:06] 2025-07-27 11:06:26,154 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 07:07:06] 2025-07-27 11:06:26,357 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 07:07:06] 2025-07-27 11:06:26,834 | INFO     | job 6745966258 has state=finished
[2025-07-27 07:07:06] 2025-07-27 11:06:26,834 | INFO     | preparing for final server update for job 6745966258 in state='finished'
[2025-07-27 07:07:06] 2025-07-27 11:06:26,836 | INFO     | this job has now completed (state=finished)
[2025-07-27 07:07:06] 2025-07-27 11:06:26,836 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 07:07:06] 2025-07-27 11:06:26,836 | INFO     | log transfer has been attempted: DONE
[2025-07-27 07:07:06] 2025-07-27 11:06:26,836 | INFO     | job 6745966258 has finished - writing final server update
[2025-07-27 07:07:06] 2025-07-27 11:06:26,837 | INFO     | total number of processed events: 400 (read)
[2025-07-27 07:07:06] 2025-07-27 11:06:26,838 | INFO     | executing command: lscpu
[2025-07-27 07:07:06] 2025-07-27 11:06:26,903 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 07:07:06] 2025-07-27 11:06:28,658 | INFO     | monitor loop #431: job 0:6745966258 is in state 'finished'
[2025-07-27 07:07:06] 2025-07-27 11:06:28,658 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 07:07:06] 2025-07-27 11:06:31,162 | INFO     | monitor loop #432: job 0:6745966258 is in state 'finished'
[2025-07-27 07:07:06] 2025-07-27 11:06:31,162 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 07:07:06] 2025-07-27 11:06:32,320 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 07:07:06] 2025-07-27 11:06:32,332 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2731.3496071428567
[2025-07-27 07:07:06] 2025-07-27 11:06:32,345 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745966258/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 07:07:06] 2025-07-27 11:06:32,346 | INFO     | extracted standard info from prmon json
[2025-07-27 07:07:06] 2025-07-27 11:06:32,346 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 07:07:06] 2025-07-27 11:06:32,347 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 07:07:06] 2025-07-27 11:06:32,347 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 07:07:06] 2025-07-27 11:06:32,347 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 07:07:06] 2025-07-27 11:06:32,351 | INFO     | fitting pss+swap vs Time
[2025-07-27 07:07:06] 2025-07-27 11:06:32,351 | INFO     | sum of square deviations: 218571540.0
[2025-07-27 07:07:06] 2025-07-27 11:06:32,352 | INFO     | sum of deviations: -18511329192.999996
[2025-07-27 07:07:06] 2025-07-27 11:06:32,352 | INFO     | mean x: 1753611531.0
[2025-07-27 07:07:06] 2025-07-27 11:06:32,352 | INFO     | mean y: 2491676.393258427
[2025-07-27 07:07:06] 2025-07-27 11:06:32,353 | INFO     | -- intersect: 148519907653.70538
[2025-07-27 07:07:06] 2025-07-27 11:06:32,353 | INFO     | intersect: 148519907653.70538
[2025-07-27 07:07:06] 2025-07-27 11:06:32,353 | INFO     | chi2: 0.23302164025599045
[2025-07-27 07:07:06] 2025-07-27 11:06:32,353 | INFO     | -- intersect: 148519907653.70538
[2025-07-27 07:07:06] 2025-07-27 11:06:32,353 | INFO     | current memory leak: -84.69 B/s (using 89 data points, chi2=0.23)
[2025-07-27 07:07:06] 2025-07-27 11:06:32,354 | INFO     | could have reported an average CPU frequency of 2666 MHz (7 samples)
[2025-07-27 07:07:06] 2025-07-27 11:06:32,354 | INFO     | ..............................
[2025-07-27 07:07:06] 2025-07-27 11:06:32,354 | INFO     | . Timing measurements:
[2025-07-27 07:07:06] 2025-07-27 11:06:32,354 | INFO     | . get job = 0 s
[2025-07-27 07:07:06] 2025-07-27 11:06:32,354 | INFO     | . initial setup = 3 s
[2025-07-27 07:07:06] 2025-07-27 11:06:32,355 | INFO     | . payload setup = 9 s
[2025-07-27 07:07:06] 2025-07-27 11:06:32,355 | INFO     | . stage-in = 0 s
[2025-07-27 07:07:06] 2025-07-27 11:06:32,355 | INFO     | . payload execution = 5841 s
[2025-07-27 07:07:06] 2025-07-27 11:06:32,355 | INFO     | . stage-out = 0 s
[2025-07-27 07:07:06] 2025-07-27 11:06:32,355 | INFO     | . log creation = 0 s
[2025-07-27 07:07:06] 2025-07-27 11:06:32,355 | INFO     | ..............................
[2025-07-27 07:07:06] 2025-07-27 11:06:32,831 | INFO     | 
[2025-07-27 07:07:06] 2025-07-27 11:06:32,831 | INFO     | job summary report
[2025-07-27 07:07:06] 2025-07-27 11:06:32,831 | INFO     | --------------------------------------------------
[2025-07-27 07:07:06] 2025-07-27 11:06:32,831 | INFO     | PanDA job id: 6745966258
[2025-07-27 07:07:06] 2025-07-27 11:06:32,831 | INFO     | task id: 45758845
[2025-07-27 07:07:06] 2025-07-27 11:06:32,831 | INFO     | errors: (none)
[2025-07-27 07:07:06] 2025-07-27 11:06:32,831 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 07:07:06] 2025-07-27 11:06:32,831 | INFO     | pilot state: finished 
[2025-07-27 07:07:06] 2025-07-27 11:06:32,831 | INFO     | transexitcode: 0
[2025-07-27 07:07:06] 2025-07-27 11:06:32,831 | INFO     | exeerrorcode: 0
[2025-07-27 07:07:06] 2025-07-27 11:06:32,831 | INFO     | exeerrordiag: 
[2025-07-27 07:07:06] 2025-07-27 11:06:32,832 | INFO     | exitcode: 0
[2025-07-27 07:07:06] 2025-07-27 11:06:32,832 | INFO     | exitmsg: OK
[2025-07-27 07:07:06] 2025-07-27 11:06:32,832 | INFO     | cpuconsumptiontime: 57899 s
[2025-07-27 07:07:06] 2025-07-27 11:06:32,832 | INFO     | nevents: 400
[2025-07-27 07:07:06] 2025-07-27 11:06:32,832 | INFO     | neventsw: 0
[2025-07-27 07:07:06] 2025-07-27 11:06:32,832 | INFO     | pid: 1314518
[2025-07-27 07:07:06] 2025-07-27 11:06:32,832 | INFO     | pgrp: 1314518
[2025-07-27 07:07:06] 2025-07-27 11:06:32,832 | INFO     | corecount: 12
[2025-07-27 07:07:06] 2025-07-27 11:06:32,832 | INFO     | event service: False
[2025-07-27 07:07:06] 2025-07-27 11:06:32,832 | INFO     | sizes: {0: 2397453, 1: 2397481, 6: 2397743, 11: 2397771, 5853: 2424350, 5854: 2424349, 5856: 2433531, 5859: 2433587, 5866: 2433781}
[2025-07-27 07:07:06] 2025-07-27 11:06:32,832 | INFO     | --------------------------------------------------
[2025-07-27 07:07:06] 2025-07-27 11:06:32,832 | INFO     | 
[2025-07-27 07:07:06] 2025-07-27 11:06:32,832 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 07:07:06] 2025-07-27 11:06:32,859 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 07:07:06] 2025-07-27 11:06:32,860 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 07:07:06] 2025-07-27 11:06:32,860 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 07:07:06] 2025-07-27 11:06:32,860 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 07:07:06] 2025-07-27 11:06:32,860 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 07:07:06] 2025-07-27 11:06:32,860 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 07:07:06] 2025-07-27 11:06:32,861 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 07:07:06] 2025-07-27 11:06:32,861 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 07:07:06] 2025-07-27 11:06:32,861 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 07:07:06] 2025-07-27 11:06:32,861 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 07:07:06] 2025-07-27 11:06:32,861 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 07:07:06] 2025-07-27 11:06:32,861 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 07:07:06] 2025-07-27 11:06:32,861 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 07:07:06] 2025-07-27 11:06:32,861 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 07:07:06] 2025-07-27 11:06:32,861 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 07:07:06] 2025-07-27 11:06:32,861 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 07:07:06] 2025-07-27 11:06:32,861 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 07:07:06] 2025-07-27 11:06:32,862 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 07:07:06] 2025-07-27 11:06:32,862 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 07:07:06] 2025-07-27 11:06:32,862 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 07:07:06] 2025-07-27 11:06:32,862 | INFO     | job 6745966258 has completed (purged errors)
[2025-07-27 07:07:06] 2025-07-27 11:06:32,862 | INFO     | overall cleanup function is called
[2025-07-27 07:07:06] 2025-07-27 11:06:33,871 | INFO     | --- collectZombieJob: --- 10, [1314518]
[2025-07-27 07:07:06] 2025-07-27 11:06:33,872 | INFO     | zombie collector waiting for pid 1314518
[2025-07-27 07:07:06] 2025-07-27 11:06:33,872 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 07:07:06] 2025-07-27 11:06:33,872 | INFO     | collected zombie processes
[2025-07-27 07:07:06] 2025-07-27 11:06:33,872 | INFO     | will attempt to kill all subprocesses of pid=1314518
[2025-07-27 07:07:06] 2025-07-27 11:06:34,258 | INFO     | process IDs to be killed: [1314518] (in reverse order)
[2025-07-27 07:07:06] 2025-07-27 11:06:34,373 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 07:07:06] 2025-07-27 11:06:34,374 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 07:07:06] 2025-07-27 11:06:34,387 | INFO     | did not find any defunct processes belonging to 1314518
[2025-07-27 07:07:06] 2025-07-27 11:06:34,398 | INFO     | did not find any defunct processes belonging to 1314518
[2025-07-27 07:07:06] 2025-07-27 11:06:34,398 | INFO     | ready for new job
[2025-07-27 07:07:06] 2025-07-27 11:06:34,398 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 07:07:06] 2025-07-27 11:06:34,400 | INFO     | ***************************************
[2025-07-27 07:07:06] 2025-07-27 11:06:34,400 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 07:07:06] 2025-07-27 11:06:34,401 | INFO     | ***************************************
[2025-07-27 07:07:06] 2025-07-27 11:06:34,401 | INFO     | 
[2025-07-27 07:07:06] 2025-07-27 11:06:34,416 | INFO     | architecture information:
[2025-07-27 07:07:06] 2025-07-27 11:06:34,417 | INFO     | executing command: cat /etc/os-release
[2025-07-27 07:07:06] 2025-07-27 11:06:34,435 | INFO     | cat /etc/os-release:
[2025-07-27 07:07:06] NAME="CentOS Linux"
[2025-07-27 07:07:06] VERSION="7 (Core)"
[2025-07-27 07:07:06] ID="centos"
[2025-07-27 07:07:06] ID_LIKE="rhel fedora"
[2025-07-27 07:07:06] VERSION_ID="7"
[2025-07-27 07:07:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 07:07:06] ANSI_COLOR="0;31"
[2025-07-27 07:07:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 07:07:06] HOME_URL="https://www.centos.org/"
[2025-07-27 07:07:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 07:07:06] 
[2025-07-27 07:07:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 07:07:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 07:07:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 07:07:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 07:07:06] 
[2025-07-27 07:07:06] 2025-07-27 11:06:34,436 | INFO     | ***************************************
[2025-07-27 07:07:06] 2025-07-27 11:06:34,938 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 07:07:06] 2025-07-27 11:06:34,959 | INFO     | sufficient remaining disk space (58572406784 B)
[2025-07-27 07:07:06] 2025-07-27 11:06:34,960 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 07:07:06] 2025-07-27 11:06:34,960 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 07:07:06] 2025-07-27 11:06:34,960 | INFO     | update_server=False
[2025-07-27 07:07:06] 2025-07-27 11:06:34,960 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 07:07:06] 2025-07-27 11:06:34,960 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 07:07:06] 2025-07-27 11:06:34,961 | INFO     | aborting loop
[2025-07-27 07:07:06] 2025-07-27 11:06:35,013 | INFO     | all data control threads have been joined
[2025-07-27 07:07:06] 2025-07-27 11:06:35,735 | INFO     | all payload control threads have been joined
[2025-07-27 07:07:06] 2025-07-27 11:06:35,873 | INFO     | all job control threads have been joined
[2025-07-27 07:07:06] 2025-07-27 11:06:35,965 | INFO     | [job] retrieve thread has finished
[2025-07-27 07:07:06] 2025-07-27 11:06:35,966 | INFO     | [job] job monitor thread has finished
[2025-07-27 07:07:06] 2025-07-27 11:06:35,974 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 07:07:06] 2025-07-27 11:06:35,978 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 07:07:06] 2025-07-27 11:06:36,019 | INFO     | [data] control thread has finished
[2025-07-27 07:07:06] 2025-07-27 11:06:36,051 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 07:07:06] 2025-07-27 11:06:36,138 | INFO     | [data] copytool_in thread has finished
[2025-07-27 07:07:06] 2025-07-27 11:06:36,490 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 07:07:06] 2025-07-27 11:06:36,740 | INFO     | [payload] control thread has finished
[2025-07-27 07:07:06] 2025-07-27 11:06:36,880 | INFO     | [job] control thread has finished
[2025-07-27 07:07:06] 2025-07-27 11:06:36,968 | INFO     | [payload] failed_post thread has finished
[2025-07-27 07:07:06] 2025-07-27 11:06:36,993 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 07:07:06] 2025-07-27 11:06:37,283 | INFO     | [job] validate thread has finished
[2025-07-27 07:07:06] 2025-07-27 11:06:37,498 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 07:07:06] 2025-07-27 11:06:37,554 | INFO     | [payload] validate_post thread has finished
[2025-07-27 07:07:06] 2025-07-27 11:06:38,058 | INFO     | [data] copytool_out thread has finished
[2025-07-27 07:07:06] 2025-07-27 11:06:38,504 | INFO     | [job] queue monitor thread has finished
[2025-07-27 07:07:06] 2025-07-27 11:06:40,999 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 07:07:06] 2025-07-27 11:06:45,430 | INFO     | job.realtimelogging is not enabled
[2025-07-27 07:07:06] 2025-07-27 11:06:46,435 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 07:07:06] 2025-07-27 11:06:47,995 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140285152593728)>', '<ExcThread(monitor, started 140284788709120)>']
[2025-07-27 07:07:06] 2025-07-27 11:06:53,020 | INFO     | all workflow threads have been joined
[2025-07-27 07:07:06] 2025-07-27 11:06:53,021 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 07:07:06] 2025-07-27 11:06:53,021 | INFO     | traces error code: 0
[2025-07-27 07:07:06] 2025-07-27 11:06:53,021 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 07:07:06] 2025-07-27 11:07:06,169 | INFO     | PID=1307982 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 07:07:06] 2025-07-27 11:07:06,170 | INFO     | .. there are 12 such processes running
[2025-07-27 07:07:06] 2025-07-27 11:07:06,172 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 07:07:06] 2025-07-27 11:07:06,172 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 07:07:06] 2025-07-27 11:07:06,172 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 07:07:06] 2025-07-27 11:07:06,173 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 07:07:06] 2025-07-27 11:07:06,173 | INFO     | [monitor] control thread has ended
[2025-07-27 07:07:06] 2025-07-27 11:07:06,404 [wrapper] ==== pilot stdout END ====
[2025-07-27 07:07:06] 2025-07-27 11:07:06,409 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 07:07:06] 2025-07-27 11:07:06,413 [wrapper] pilotpid: 1307982
[2025-07-27 07:07:06] 2025-07-27 11:07:06,416 [wrapper] Pilot exit status: 0
[2025-07-27 07:07:06] 2025-07-27 11:07:06,431 [wrapper] pandaids: 6745966258
[2025-07-27 07:07:06] 2025-07-27 11:07:06,514 [wrapper] cleanup supervisor_pilot 1555720 1307983
[2025-07-27 07:07:06] 2025-07-27 11:07:06,519 [wrapper] Test setup, not cleaning
[2025-07-27 07:07:06] 2025-07-27 11:07:06,525 [wrapper] apfmon messages muted
[2025-07-27 07:07:06] 2025-07-27 11:07:06,530 [wrapper] ==== wrapper stdout END ====
[2025-07-27 07:07:06] 2025-07-27 11:07:06,536 [wrapper] ==== wrapper stderr END ====
[2025-07-27 07:07:06]  *** Error codes and diagnostics ***
[2025-07-27 07:07:06]     "exeErrorCode": 0,
[2025-07-27 07:07:06]     "exeErrorDiag": "",
[2025-07-27 07:07:06]     "pilotErrorCode": 0,
[2025-07-27 07:07:06]     "pilotErrorDiag": "",
[2025-07-27 07:07:06]  *** Listing of results directory ***
[2025-07-27 07:07:06] total 412580
[2025-07-27 07:07:06] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 22:38 pilot3.tar.gz
[2025-07-27 07:07:06] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 23:02 queuedata.json
[2025-07-27 07:07:06] -rwx------. 1 boincer umatlas     36292 Jul 26 23:03 runpilot2-wrapper.sh
[2025-07-27 07:07:06] -rw-r--r--. 1 boincer umatlas       100 Jul 27 05:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 07:07:06] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 05:28 run_atlas
[2025-07-27 07:07:06] -rw-r--r--. 1 boincer umatlas       105 Jul 27 05:28 job.xml
[2025-07-27 07:07:06] -rw-r--r--. 2 boincer umatlas 239568147 Jul 27 05:28 EVNT.45758843._000001.pool.root.1
[2025-07-27 07:07:06] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 05:28 start_atlas.sh
[2025-07-27 07:07:06] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 05:28 shared
[2025-07-27 07:07:06] -rw-r--r--. 2 boincer umatlas    542875 Jul 27 05:28 input.tar.gz
[2025-07-27 07:07:06] -rw-r--r--. 1 boincer umatlas         0 Jul 27 05:28 boinc_lockfile
[2025-07-27 07:07:06] -rw-r--r--. 1 boincer umatlas      2551 Jul 27 05:28 pandaJob.out
[2025-07-27 07:07:06] -rw-------. 1 boincer umatlas    980125 Jul 27 05:28 agis_schedconf.cvmfs.json
[2025-07-27 07:07:06] -rw-------. 1 boincer umatlas   1593052 Jul 27 05:28 agis_ddmendpoints.agis.ALL.json
[2025-07-27 07:07:06] drwx------. 4 boincer umatlas      4096 Jul 27 05:28 pilot3
[2025-07-27 07:07:06] -rw-r--r--. 1 boincer umatlas      6842 Jul 27 07:01 init_data.xml
[2025-07-27 07:07:06] -rw-------. 1 boincer umatlas 177174511 Jul 27 07:05 HITS.45758845._000002.pool.root.1
[2025-07-27 07:07:06] -rw-r--r--. 1 boincer umatlas       529 Jul 27 07:05 boinc_task_state.xml
[2025-07-27 07:07:06] -rw-------. 1 boincer umatlas      1035 Jul 27 07:06 memory_monitor_summary.json
[2025-07-27 07:07:06] -rw-------. 1 boincer umatlas    366924 Jul 27 07:06 log.45758845._000002.job.log.tgz.1
[2025-07-27 07:07:06] -rw-------. 1 boincer umatlas      7802 Jul 27 07:06 heartbeat.json
[2025-07-27 07:07:06] -rw-r--r--. 1 boincer umatlas        27 Jul 27 07:06 wrapper_checkpoint.txt
[2025-07-27 07:07:06] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 07:06 boinc_mmap_file
[2025-07-27 07:07:06] -rw-------. 1 boincer umatlas        95 Jul 27 07:07 pilot_heartbeat.json
[2025-07-27 07:07:06] -rw-------. 1 boincer umatlas       823 Jul 27 07:07 pilotlog.txt
[2025-07-27 07:07:06] -rw-------. 1 boincer umatlas    565204 Jul 27 07:07 log.45758845._000002.job.log.1
[2025-07-27 07:07:06] -rw-------. 1 boincer umatlas       357 Jul 27 07:07 output.list
[2025-07-27 07:07:06] -rw-r--r--. 1 boincer umatlas       620 Jul 27 07:07 runtime_log
[2025-07-27 07:07:06] -rw-------. 1 boincer umatlas    952320 Jul 27 07:07 result.tar.gz
[2025-07-27 07:07:06] -rw-r--r--. 1 boincer umatlas      8667 Jul 27 07:07 runtime_log.err
[2025-07-27 07:07:06] -rw-------. 1 boincer umatlas       655 Jul 27 07:07 iGHNDmnq6z7n9Rq4apOajLDm4fhM0noT9bVof3QYDmzo1KDmx1r3Jo.diag
[2025-07-27 07:07:06] -rw-r--r--. 1 boincer umatlas     21860 Jul 27 07:07 stderr.txt
[2025-07-27 07:07:06] HITS file was successfully produced:
[2025-07-27 07:07:06] -rw-------. 1 boincer umatlas 177174511 Jul 27 07:05 shared/HITS.pool.root.1
[2025-07-27 07:07:06]  *** Contents of shared directory: ***
[2025-07-27 07:07:06] total 408464
[2025-07-27 07:07:06] -rw-r--r--. 2 boincer umatlas 239568147 Jul 27 05:28 ATLAS.root_0
[2025-07-27 07:07:06] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 05:28 start_atlas.sh
[2025-07-27 07:07:06] -rw-r--r--. 2 boincer umatlas    542875 Jul 27 05:28 input.tar.gz
[2025-07-27 07:07:06] -rw-------. 1 boincer umatlas 177174511 Jul 27 07:05 HITS.pool.root.1
[2025-07-27 07:07:06] -rw-------. 1 boincer umatlas    952320 Jul 27 07:07 result.tar.gz
07:07:08 (1304239): run_atlas exited; CPU time 57927.282059
07:07:08 (1304239): called boinc_finish(0)

</stderr_txt>
]]>

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