Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:43:14 (354116): wrapper (7.7.26015): starting
21:43:14 (354116): wrapper: running run_atlas (--nthreads 4)
[2025-07-27 21:43:14] Arguments: --nthreads 4
[2025-07-27 21:43:14] Threads: 4
[2025-07-27 21:43:14] Checking for CVMFS
[2025-07-27 21:43:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 21:43:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 21:43:14] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 21:43:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 21:43:14] 2.9.2.0 3203 1024 84552 148822 2 178 19715647 36864000 0 130560 0 938135 99.992 34508 552 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-07-27 21:43:14] CVMFS is ok
[2025-07-27 21:43:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 21:43:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 21:43:14] Further information can be found at the LHC@home message board.
[2025-07-27 21:43:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 21:43:14] Checking for apptainer binary...
[2025-07-27 21:43:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 21:43:14] Running /usr/bin/apptainer --version
[2025-07-27 21:43:14] apptainer version 1.4.1-1.1
[2025-07-27 21:43:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 21:43:14] thA338
[2025-07-27 21:43:14] apptainer works
[2025-07-27 21:43:14] Set ATHENA_PROC_NUMBER=4
[2025-07-27 21:43:14] Set ATHENA_CORE_NUMBER=4
[2025-07-27 21:43:14] Starting ATLAS job with PandaID=6745502524
[2025-07-27 21:43:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 23:07:25]  *** The last 200 lines of the pilot log: ***
[2025-07-27 23:07:25]  is_altstaged=None
[2025-07-27 23:07:25]  is_tar=False
[2025-07-27 23:07:25]  lfn=log.45743349._044053.job.log.tgz.1
[2025-07-27 23:07:25]  mtime=0
[2025-07-27 23:07:25]  protocol_id=None
[2025-07-27 23:07:25]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 23:07:25]  replicas=None
[2025-07-27 23:07:25]  scope=mc23_13p6TeV
[2025-07-27 23:07:25]  status=None
[2025-07-27 23:07:25]  status_code=0
[2025-07-27 23:07:25]  storage_token=
[2025-07-27 23:07:25]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6745502524/log.45743349._044053.job.log.tgz.1
[2025-07-27 23:07:25]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a4/70/log.45743349._044053.job.log.tgz.1
[2025-07-27 23:07:25]  workdir=None
[2025-07-27 23:07:25] ]
[2025-07-27 23:07:25] 2025-07-27 21:06:44,534 | INFO     | transferring file log.45743349._044053.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6745502524/log.45743349._044053.job.log.tgz.1 to /local/data/boinc/
[2025-07-27 23:07:25] 2025-07-27 21:06:44,534 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6745502524/log.45743349._044053.job.log.tgz.1 /local/data/boinc/slots/0/log.45743349._0440
[2025-07-27 23:07:25] 2025-07-27 21:06:44,552 | INFO     | adding to output.list: log.45743349._044053.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a4/70/log.45743349._044053.job.log.tg
[2025-07-27 23:07:25] 2025-07-27 21:06:44,553 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 23:07:25] 2025-07-27 21:06:44,553 | INFO     | summary of transferred files:
[2025-07-27 23:07:25] 2025-07-27 21:06:44,553 | INFO     |  -- lfn=log.45743349._044053.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 23:07:25] 2025-07-27 21:06:44,553 | INFO     | stage-out finished correctly
[2025-07-27 23:07:25] 2025-07-27 21:06:47,447 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 23:07:25] 2025-07-27 21:06:47,575 | INFO     | job 6745502524 has state=finished
[2025-07-27 23:07:25] 2025-07-27 21:06:47,575 | INFO     | preparing for final server update for job 6745502524 in state='finished'
[2025-07-27 23:07:25] 2025-07-27 21:06:47,576 | INFO     | this job has now completed (state=finished)
[2025-07-27 23:07:25] 2025-07-27 21:06:47,576 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 23:07:25] 2025-07-27 21:06:47,576 | INFO     | log transfer has been attempted: DONE
[2025-07-27 23:07:25] 2025-07-27 21:06:47,576 | INFO     | job 6745502524 has finished - writing final server update
[2025-07-27 23:07:25] 2025-07-27 21:06:47,576 | INFO     | total number of processed events: 400 (read)
[2025-07-27 23:07:25] 2025-07-27 21:06:47,577 | INFO     | executing command: lscpu
[2025-07-27 23:07:25] 2025-07-27 21:06:47,599 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 23:07:25] 2025-07-27 21:06:48,330 | WARNING  | process 364469 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 23:07:25] 2025-07-27 21:06:48,330 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6745502524/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 23:07:25] 2025-07-27 21:06:48,370 | INFO     | number of running child processes to parent process 364469: 1
[2025-07-27 23:07:25] 2025-07-27 21:06:48,370 | INFO     | maximum number of monitored processes: 6
[2025-07-27 23:07:25] 2025-07-27 21:06:50,873 | INFO     | monitor loop #385: job 0:6745502524 is in state 'finished'
[2025-07-27 23:07:25] 2025-07-27 21:06:50,873 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 23:07:25] 2025-07-27 21:06:52,807 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 23:07:25] 2025-07-27 21:06:52,809 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3263.6656250000005
[2025-07-27 23:07:25] 2025-07-27 21:06:52,810 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6745502524/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 23:07:25] 2025-07-27 21:06:52,810 | INFO     | extracted standard info from prmon json
[2025-07-27 23:07:25] 2025-07-27 21:06:52,810 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 23:07:25] 2025-07-27 21:06:52,810 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 23:07:25] 2025-07-27 21:06:52,811 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 23:07:25] 2025-07-27 21:06:52,811 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 23:07:25] 2025-07-27 21:06:52,811 | INFO     | fitting pss+swap vs Time
[2025-07-27 23:07:25] 2025-07-27 21:06:52,811 | INFO     | sum of square deviations: 130793150.0
[2025-07-27 23:07:25] 2025-07-27 21:06:52,812 | INFO     | sum of deviations: -10476465252.0
[2025-07-27 23:07:25] 2025-07-27 21:06:52,812 | INFO     | mean x: 1753647988.0
[2025-07-27 23:07:25] 2025-07-27 21:06:52,812 | INFO     | mean y: 2504333.7066666665
[2025-07-27 23:07:25] 2025-07-27 21:06:52,812 | INFO     | -- intersect: 140468822413.22165
[2025-07-27 23:07:25] 2025-07-27 21:06:52,812 | INFO     | intersect: 140468822413.22165
[2025-07-27 23:07:25] 2025-07-27 21:06:52,812 | INFO     | chi2: 0.07193083304016583
[2025-07-27 23:07:25] 2025-07-27 21:06:52,812 | INFO     | -- intersect: 140468822413.22165
[2025-07-27 23:07:25] 2025-07-27 21:06:52,812 | INFO     | current memory leak: -80.10 B/s (using 75 data points, chi2=0.07)
[2025-07-27 23:07:25] 2025-07-27 21:06:52,812 | INFO     | could have reported an average CPU frequency of 3714 MHz (6 samples)
[2025-07-27 23:07:25] 2025-07-27 21:06:52,812 | INFO     | ..............................
[2025-07-27 23:07:25] 2025-07-27 21:06:52,812 | INFO     | . Timing measurements:
[2025-07-27 23:07:25] 2025-07-27 21:06:52,812 | INFO     | . get job = 0 s
[2025-07-27 23:07:25] 2025-07-27 21:06:52,812 | INFO     | . initial setup = 1 s
[2025-07-27 23:07:25] 2025-07-27 21:06:52,812 | INFO     | . payload setup = 5 s
[2025-07-27 23:07:25] 2025-07-27 21:06:52,812 | INFO     | . stage-in = 0 s
[2025-07-27 23:07:25] 2025-07-27 21:06:52,812 | INFO     | . payload execution = 4977 s
[2025-07-27 23:07:25] 2025-07-27 21:06:52,812 | INFO     | . stage-out = 0 s
[2025-07-27 23:07:25] 2025-07-27 21:06:52,812 | INFO     | . log creation = 0 s
[2025-07-27 23:07:25] 2025-07-27 21:06:52,812 | INFO     | ..............................
[2025-07-27 23:07:25] 2025-07-27 21:06:52,853 | INFO     | 
[2025-07-27 23:07:25] 2025-07-27 21:06:52,854 | INFO     | job summary report
[2025-07-27 23:07:25] 2025-07-27 21:06:52,854 | INFO     | --------------------------------------------------
[2025-07-27 23:07:25] 2025-07-27 21:06:52,854 | INFO     | PanDA job id: 6745502524
[2025-07-27 23:07:25] 2025-07-27 21:06:52,854 | INFO     | task id: 45743349
[2025-07-27 23:07:25] 2025-07-27 21:06:52,854 | INFO     | errors: (none)
[2025-07-27 23:07:25] 2025-07-27 21:06:52,854 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 23:07:25] 2025-07-27 21:06:52,854 | INFO     | pilot state: finished 
[2025-07-27 23:07:25] 2025-07-27 21:06:52,854 | INFO     | transexitcode: 0
[2025-07-27 23:07:25] 2025-07-27 21:06:52,854 | INFO     | exeerrorcode: 0
[2025-07-27 23:07:25] 2025-07-27 21:06:52,854 | INFO     | exeerrordiag: 
[2025-07-27 23:07:25] 2025-07-27 21:06:52,854 | INFO     | exitcode: 0
[2025-07-27 23:07:25] 2025-07-27 21:06:52,854 | INFO     | exitmsg: OK
[2025-07-27 23:07:25] 2025-07-27 21:06:52,854 | INFO     | cpuconsumptiontime: 18930 s
[2025-07-27 23:07:25] 2025-07-27 21:06:52,854 | INFO     | nevents: 400
[2025-07-27 23:07:25] 2025-07-27 21:06:52,854 | INFO     | neventsw: 0
[2025-07-27 23:07:25] 2025-07-27 21:06:52,854 | INFO     | pid: 364469
[2025-07-27 23:07:25] 2025-07-27 21:06:52,854 | INFO     | pgrp: 364469
[2025-07-27 23:07:25] 2025-07-27 21:06:52,854 | INFO     | corecount: 4
[2025-07-27 23:07:25] 2025-07-27 21:06:52,854 | INFO     | event service: False
[2025-07-27 23:07:25] 2025-07-27 21:06:52,855 | INFO     | sizes: {0: 2397427, 3: 2397689, 10: 2397717, 4986: 2424157, 4988: 2433161, 4991: 2433217, 4996: 2433539}
[2025-07-27 23:07:25] 2025-07-27 21:06:52,855 | INFO     | --------------------------------------------------
[2025-07-27 23:07:25] 2025-07-27 21:06:52,855 | INFO     | 
[2025-07-27 23:07:25] 2025-07-27 21:06:52,855 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-07-27 23:07:25] 2025-07-27 21:06:52,874 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 23:07:25] 2025-07-27 21:06:52,874 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 23:07:25] 2025-07-27 21:06:52,874 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 23:07:25] 2025-07-27 21:06:52,874 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 23:07:25] 2025-07-27 21:06:52,874 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 23:07:25] 2025-07-27 21:06:52,874 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 23:07:25] 2025-07-27 21:06:52,874 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 23:07:25] 2025-07-27 21:06:52,874 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 23:07:25] 2025-07-27 21:06:52,874 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 23:07:25] 2025-07-27 21:06:52,874 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 23:07:25] 2025-07-27 21:06:52,874 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 23:07:25] 2025-07-27 21:06:52,874 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 23:07:25] 2025-07-27 21:06:52,874 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 23:07:25] 2025-07-27 21:06:52,875 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 23:07:25] 2025-07-27 21:06:52,875 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 23:07:25] 2025-07-27 21:06:52,875 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 23:07:25] 2025-07-27 21:06:52,875 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 23:07:25] 2025-07-27 21:06:52,875 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 23:07:25] 2025-07-27 21:06:52,875 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 23:07:25] 2025-07-27 21:06:52,875 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 23:07:25] 2025-07-27 21:06:52,875 | INFO     | job 6745502524 has completed (purged errors)
[2025-07-27 23:07:25] 2025-07-27 21:06:52,875 | INFO     | overall cleanup function is called
[2025-07-27 23:07:25] 2025-07-27 21:06:53,882 | INFO     | --- collectZombieJob: --- 10, [364469]
[2025-07-27 23:07:25] 2025-07-27 21:06:53,882 | INFO     | zombie collector waiting for pid 364469
[2025-07-27 23:07:25] 2025-07-27 21:06:53,882 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 23:07:25] 2025-07-27 21:06:53,882 | INFO     | collected zombie processes
[2025-07-27 23:07:25] 2025-07-27 21:06:53,882 | INFO     | will attempt to kill all subprocesses of pid=364469
[2025-07-27 23:07:25] 2025-07-27 21:06:53,926 | INFO     | process IDs to be killed: [364469] (in reverse order)
[2025-07-27 23:07:25] 2025-07-27 21:06:53,960 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 23:07:25] 2025-07-27 21:06:53,960 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 23:07:25] 2025-07-27 21:06:53,962 | INFO     | did not find any defunct processes belonging to 364469
[2025-07-27 23:07:25] 2025-07-27 21:06:53,963 | INFO     | did not find any defunct processes belonging to 364469
[2025-07-27 23:07:25] 2025-07-27 21:06:53,963 | INFO     | ready for new job
[2025-07-27 23:07:25] 2025-07-27 21:06:53,963 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 23:07:25] 2025-07-27 21:06:53,964 | INFO     | ***************************************
[2025-07-27 23:07:25] 2025-07-27 21:06:53,964 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 23:07:25] 2025-07-27 21:06:53,964 | INFO     | ***************************************
[2025-07-27 23:07:25] 2025-07-27 21:06:53,964 | INFO     | 
[2025-07-27 23:07:25] 2025-07-27 21:06:53,964 | INFO     | architecture information:
[2025-07-27 23:07:25] 2025-07-27 21:06:53,964 | INFO     | executing command: cat /etc/os-release
[2025-07-27 23:07:25] 2025-07-27 21:06:53,978 | INFO     | cat /etc/os-release:
[2025-07-27 23:07:25] NAME="CentOS Linux"
[2025-07-27 23:07:25] VERSION="7 (Core)"
[2025-07-27 23:07:25] ID="centos"
[2025-07-27 23:07:25] ID_LIKE="rhel fedora"
[2025-07-27 23:07:25] VERSION_ID="7"
[2025-07-27 23:07:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 23:07:25] ANSI_COLOR="0;31"
[2025-07-27 23:07:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 23:07:25] HOME_URL="https://www.centos.org/"
[2025-07-27 23:07:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 23:07:25] 
[2025-07-27 23:07:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 23:07:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 23:07:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 23:07:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 23:07:25] 
[2025-07-27 23:07:25] 2025-07-27 21:06:53,978 | INFO     | ***************************************
[2025-07-27 23:07:25] 2025-07-27 21:06:54,482 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-07-27 23:07:25] 2025-07-27 21:06:54,500 | INFO     | sufficient remaining disk space (235607687168 B)
[2025-07-27 23:07:25] 2025-07-27 21:06:54,500 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 23:07:25] 2025-07-27 21:06:54,500 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 23:07:25] 2025-07-27 21:06:54,500 | INFO     | update_server=False
[2025-07-27 23:07:25] 2025-07-27 21:06:54,500 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 23:07:25] 2025-07-27 21:06:54,501 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 23:07:25] 2025-07-27 21:06:54,501 | INFO     | aborting loop
[2025-07-27 23:07:25] 2025-07-27 21:06:54,501 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 23:07:25] 2025-07-27 21:06:54,640 | INFO     | all payload control threads have been joined
[2025-07-27 23:07:25] 2025-07-27 21:06:55,017 | INFO     | all job control threads have been joined
[2025-07-27 23:07:25] 2025-07-27 21:06:55,112 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 23:07:25] 2025-07-27 21:06:55,213 | INFO     | all data control threads have been joined
[2025-07-27 23:07:25] 2025-07-27 21:06:55,506 | INFO     | [job] retrieve thread has finished
[2025-07-27 23:07:25] 2025-07-27 21:06:55,506 | INFO     | [job] job monitor thread has finished
[2025-07-27 23:07:25] 2025-07-27 21:06:55,507 | INFO     | [job] queue monitor thread has finished
[2025-07-27 23:07:25] 2025-07-27 21:06:55,646 | INFO     | [payload] control thread has finished
[2025-07-27 23:07:25] 2025-07-27 21:06:55,808 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 23:07:25] 2025-07-27 21:06:55,877 | INFO     | [data] copytool_in thread has finished
[2025-07-27 23:07:25] 2025-07-27 21:06:56,023 | INFO     | [job] control thread has finished
[2025-07-27 23:07:25] 2025-07-27 21:06:56,105 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 23:07:25] 2025-07-27 21:06:56,218 | INFO     | [data] control thread has finished
[2025-07-27 23:07:25] 2025-07-27 21:06:56,348 | INFO     | [payload] failed_post thread has finished
[2025-07-27 23:07:25] 2025-07-27 21:06:56,595 | INFO     | [job] validate thread has finished
[2025-07-27 23:07:25] 2025-07-27 21:06:56,697 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 23:07:25] 2025-07-27 21:06:56,785 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 23:07:25] 2025-07-27 21:06:56,908 | INFO     | [payload] validate_post thread has finished
[2025-07-27 23:07:25] 2025-07-27 21:06:57,118 | INFO     | [data] copytool_out thread has finished
[2025-07-27 23:07:25] 2025-07-27 21:06:57,999 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 23:07:25] 2025-07-27 21:07:02,006 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 23:07:25] 2025-07-27 21:07:03,711 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139992329246528)>', '<ExcThread(monitor, started 139991556544256)>']
[2025-07-27 23:07:25] 2025-07-27 21:07:08,737 | INFO     | all workflow threads have been joined
[2025-07-27 23:07:25] 2025-07-27 21:07:08,737 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 23:07:25] 2025-07-27 21:07:08,737 | INFO     | traces error code: 0
[2025-07-27 23:07:25] 2025-07-27 21:07:08,737 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 23:07:25] 2025-07-27 21:07:25,080 | INFO     | PID=357823 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 23:07:25] 2025-07-27 21:07:25,080 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 23:07:25] 2025-07-27 21:07:25,080 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 23:07:25] 2025-07-27 21:07:25,080 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 23:07:25] 2025-07-27 21:07:25,080 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 23:07:25] 2025-07-27 21:07:25,080 | INFO     | [monitor] control thread has ended
[2025-07-27 23:07:25] 2025-07-27 21:07:25,157 [wrapper] ==== pilot stdout END ====
[2025-07-27 23:07:25] 2025-07-27 21:07:25,161 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 23:07:25] 2025-07-27 21:07:25,165 [wrapper] pilotpid: 357823
[2025-07-27 23:07:25] 2025-07-27 21:07:25,169 [wrapper] Pilot exit status: 0
[2025-07-27 23:07:25] 2025-07-27 21:07:25,180 [wrapper] pandaids: 6745502524
[2025-07-27 23:07:25] 2025-07-27 21:07:25,202 [wrapper] cleanup supervisor_pilot  379615 357824
[2025-07-27 23:07:25] 2025-07-27 21:07:25,207 [wrapper] Test setup, not cleaning
[2025-07-27 23:07:25] 2025-07-27 21:07:25,211 [wrapper] apfmon messages muted
[2025-07-27 23:07:25] 2025-07-27 21:07:25,215 [wrapper] ==== wrapper stdout END ====
[2025-07-27 23:07:25] 2025-07-27 21:07:25,219 [wrapper] ==== wrapper stderr END ====
[2025-07-27 23:07:25]  *** Error codes and diagnostics ***
[2025-07-27 23:07:25]     "exeErrorCode": 0,
[2025-07-27 23:07:25]     "exeErrorDiag": "",
[2025-07-27 23:07:25]     "pilotErrorCode": 0,
[2025-07-27 23:07:25]     "pilotErrorDiag": "",
[2025-07-27 23:07:25]  *** Listing of results directory ***
[2025-07-27 23:07:25] total 360996
[2025-07-27 23:07:25] -rw-r--r-- 1 boinc boinc    530466 Jul 26 22:19 pilot3.tar.gz
[2025-07-27 23:07:25] -rwx------ 1 boinc boinc     36292 Jul 26 22:35 runpilot2-wrapper.sh
[2025-07-27 23:07:25] -rw-r--r-- 1 boinc boinc      5112 Jul 26 22:35 queuedata.json
[2025-07-27 23:07:25] -rw-r--r-- 1 boinc boinc       100 Jul 27 21:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 23:07:25] -rwxr-xr-x 1 boinc boinc      7986 Jul 27 21:43 run_atlas
[2025-07-27 23:07:25] -rw-r--r-- 1 boinc boinc       105 Jul 27 21:43 job.xml
[2025-07-27 23:07:25] -rw-r--r-- 2 boinc boinc 143989069 Jul 27 21:43 EVNT.45743347._002516.pool.root.1
[2025-07-27 23:07:25] -rw-r--r-- 2 boinc boinc    542891 Jul 27 21:43 input.tar.gz
[2025-07-27 23:07:25] -rw-r--r-- 2 boinc boinc     15095 Jul 27 21:43 start_atlas.sh
[2025-07-27 23:07:25] drwxrwx--x 2 boinc boinc      4096 Jul 27 21:43 shared
[2025-07-27 23:07:25] -rw-r--r-- 1 boinc boinc         0 Jul 27 21:43 boinc_setup_complete
[2025-07-27 23:07:25] -rw-r--r-- 1 boinc boinc      6379 Jul 27 21:43 init_data.xml
[2025-07-27 23:07:25] -rw-r--r-- 1 boinc boinc         0 Jul 27 21:43 boinc_lockfile
[2025-07-27 23:07:25] -rw-r--r-- 1 boinc boinc      2562 Jul 27 21:43 pandaJob.out
[2025-07-27 23:07:25] -rw------- 1 boinc boinc    980125 Jul 27 21:43 agis_schedconf.cvmfs.json
[2025-07-27 23:07:25] -rw------- 1 boinc boinc   1593052 Jul 27 21:43 agis_ddmendpoints.agis.ALL.json
[2025-07-27 23:07:25] drwx------ 4 boinc boinc      4096 Jul 27 21:43 pilot3
[2025-07-27 23:07:25] -rw------- 1 boinc boinc 220332294 Jul 27 23:06 HITS.45743349._044053.pool.root.1
[2025-07-27 23:07:25] -rw-r--r-- 1 boinc boinc       529 Jul 27 23:06 boinc_task_state.xml
[2025-07-27 23:07:25] -rw------- 1 boinc boinc      1019 Jul 27 23:06 memory_monitor_summary.json
[2025-07-27 23:07:25] -rw------- 1 boinc boinc    242600 Jul 27 23:06 log.45743349._044053.job.log.tgz.1
[2025-07-27 23:07:25] -rw------- 1 boinc boinc        95 Jul 27 23:06 pilot_heartbeat.json
[2025-07-27 23:07:25] -rw------- 1 boinc boinc      7762 Jul 27 23:06 heartbeat.json
[2025-07-27 23:07:25] -rw-r--r-- 1 boinc boinc      8192 Jul 27 23:06 boinc_mmap_file
[2025-07-27 23:07:25] -rw-r--r-- 1 boinc boinc        27 Jul 27 23:06 wrapper_checkpoint.txt
[2025-07-27 23:07:25] -rw------- 1 boinc boinc       746 Jul 27 23:07 pilotlog.txt
[2025-07-27 23:07:25] -rw------- 1 boinc boinc    486184 Jul 27 23:07 log.45743349._044053.job.log.1
[2025-07-27 23:07:25] -rw------- 1 boinc boinc       357 Jul 27 23:07 output.list
[2025-07-27 23:07:25] -rw-r--r-- 1 boinc boinc       620 Jul 27 23:07 runtime_log
[2025-07-27 23:07:25] -rw------- 1 boinc boinc    747520 Jul 27 23:07 result.tar.gz
[2025-07-27 23:07:25] -rw-r--r-- 1 boinc boinc      8734 Jul 27 23:07 runtime_log.err
[2025-07-27 23:07:25] -rw------- 1 boinc boinc       658 Jul 27 23:07 3v5LDmMn0z7n9Rq4apOajLDm4fhM0noT9bVof3QYDmEQ1KDmiRj8fm.diag
[2025-07-27 23:07:25] -rw-r--r-- 1 boinc boinc     21511 Jul 27 23:07 stderr.txt
[2025-07-27 23:07:25] HITS file was successfully produced:
[2025-07-27 23:07:25] -rw------- 1 boinc boinc 220332294 Jul 27 23:06 shared/HITS.pool.root.1
[2025-07-27 23:07:25]  *** Contents of shared directory: ***
[2025-07-27 23:07:25] total 357076
[2025-07-27 23:07:25] -rw-r--r-- 2 boinc boinc 143989069 Jul 27 21:43 ATLAS.root_0
[2025-07-27 23:07:25] -rw-r--r-- 2 boinc boinc    542891 Jul 27 21:43 input.tar.gz
[2025-07-27 23:07:25] -rw-r--r-- 2 boinc boinc     15095 Jul 27 21:43 start_atlas.sh
[2025-07-27 23:07:25] -rw------- 1 boinc boinc 220332294 Jul 27 23:06 HITS.pool.root.1
[2025-07-27 23:07:25] -rw------- 1 boinc boinc    747520 Jul 27 23:07 result.tar.gz
23:07:26 (354116): run_atlas exited; CPU time 18946.135549
23:07:26 (354116): called boinc_finish(0)

</stderr_txt>
]]>

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