Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
03:36:35 (6681): wrapper (7.7.26015): starting
03:36:35 (6681): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 03:36:35] Arguments: --nthreads 12
[2025-07-27 03:36:35] Threads: 12
[2025-07-27 03:36:35] Checking for CVMFS
[2025-07-27 03:36:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 03:36:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 03:36:35] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 03:36:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 03:36:35] 2.11.2.0 2914 111710 94872 148804 2 57 15456964 20275200 1 130560 0 37474136 99.969 9715296 10651 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 03:36:35] CVMFS is ok
[2025-07-27 03:36:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 03:36:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 03:36:36] Further information can be found at the LHC@home message board.
[2025-07-27 03:36:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 03:36:36] Checking for apptainer binary...
[2025-07-27 03:36:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 03:36:36] Running /usr/bin/apptainer --version
[2025-07-27 03:36:36] apptainer version 1.3.2-1.el7
[2025-07-27 03:36:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 03:36:37] c-205-5.aglt2.org
[2025-07-27 03:36:37] apptainer works
[2025-07-27 03:36:37] Set ATHENA_PROC_NUMBER=12
[2025-07-27 03:36:37] Set ATHENA_CORE_NUMBER=12
[2025-07-27 03:36:37] Starting ATLAS job with PandaID=6746065061
[2025-07-27 03:36:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 05:08:09]  *** The last 200 lines of the pilot log: ***
[2025-07-27 05:08:09]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-07-27 05:08:09]  is_altstaged=None
[2025-07-27 05:08:09]  is_tar=False
[2025-07-27 05:08:09]  lfn=log.45759671._000012.job.log.tgz.1
[2025-07-27 05:08:09]  mtime=0
[2025-07-27 05:08:09]  protocol_id=None
[2025-07-27 05:08:09]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 05:08:09]  replicas=None
[2025-07-27 05:08:09]  scope=mc23_13p6TeV
[2025-07-27 05:08:09]  status=None
[2025-07-27 05:08:09]  status_code=0
[2025-07-27 05:08:09]  storage_token=
[2025-07-27 05:08:09]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6746065061/log.45759671._000012.job.log.tgz.1
[2025-07-27 05:08:09]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b2/89/log.45759671._000012.job.log.tgz.1
[2025-07-27 05:08:09]  workdir=None
[2025-07-27 05:08:09] ]
[2025-07-27 05:08:09] 2025-07-27 09:07:32,354 | INFO     | transferring file log.45759671._000012.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6746065061/log.45759671._000012.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 05:08:09] 2025-07-27 09:07:32,354 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6746065061/log.45759671._000012.job.log.tgz.1 /tmp/boinchome/slots/0/log.45759671._000012.job
[2025-07-27 05:08:09] 2025-07-27 09:07:32,377 | INFO     | adding to output.list: log.45759671._000012.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b2/89/log.45759671._000012.job.log.tg
[2025-07-27 05:08:09] 2025-07-27 09:07:32,378 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 05:08:09] 2025-07-27 09:07:32,379 | INFO     | summary of transferred files:
[2025-07-27 05:08:09] 2025-07-27 09:07:32,379 | INFO     |  -- lfn=log.45759671._000012.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 05:08:09] 2025-07-27 09:07:32,379 | INFO     | stage-out finished correctly
[2025-07-27 05:08:09] 2025-07-27 09:07:32,465 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 05:08:09] 2025-07-27 09:07:32,544 | INFO     | job 6746065061 has state=finished
[2025-07-27 05:08:09] 2025-07-27 09:07:32,544 | INFO     | preparing for final server update for job 6746065061 in state='finished'
[2025-07-27 05:08:09] 2025-07-27 09:07:32,545 | INFO     | this job has now completed (state=finished)
[2025-07-27 05:08:09] 2025-07-27 09:07:32,545 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 05:08:09] 2025-07-27 09:07:32,545 | INFO     | log transfer has been attempted: DONE
[2025-07-27 05:08:09] 2025-07-27 09:07:32,545 | INFO     | job 6746065061 has finished - writing final server update
[2025-07-27 05:08:09] 2025-07-27 09:07:32,546 | INFO     | total number of processed events: 400 (read)
[2025-07-27 05:08:09] 2025-07-27 09:07:32,547 | INFO     | executing command: lscpu
[2025-07-27 05:08:09] 2025-07-27 09:07:32,570 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 05:08:09] 2025-07-27 09:07:33,583 | INFO     | monitor loop #406: job 0:6746065061 is in state 'finished'
[2025-07-27 05:08:09] 2025-07-27 09:07:33,583 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 05:08:09] 2025-07-27 09:07:36,086 | INFO     | monitor loop #407: job 0:6746065061 is in state 'finished'
[2025-07-27 05:08:09] 2025-07-27 09:07:36,086 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 05:08:09] 2025-07-27 09:07:37,603 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-27 05:08:09] 2025-07-27 09:07:37,606 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-07-27 05:08:09] 2025-07-27 09:07:37,609 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6746065061/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 05:08:09] 2025-07-27 09:07:37,609 | INFO     | extracted standard info from prmon json
[2025-07-27 05:08:09] 2025-07-27 09:07:37,609 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 05:08:09] 2025-07-27 09:07:37,609 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 05:08:09] 2025-07-27 09:07:37,610 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 05:08:09] 2025-07-27 09:07:37,610 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 05:08:09] 2025-07-27 09:07:37,611 | INFO     | fitting pss+swap vs Time
[2025-07-27 05:08:09] 2025-07-27 09:07:37,612 | INFO     | sum of square deviations: 170944600.5
[2025-07-27 05:08:09] 2025-07-27 09:07:37,612 | INFO     | sum of deviations: -10700311950.000004
[2025-07-27 05:08:09] 2025-07-27 09:07:37,612 | INFO     | mean x: 1753604617.5
[2025-07-27 05:08:09] 2025-07-27 09:07:37,612 | INFO     | mean y: 2786909.2439024393
[2025-07-27 05:08:09] 2025-07-27 09:07:37,612 | INFO     | -- intersect: 109770023717.70006
[2025-07-27 05:08:09] 2025-07-27 09:07:37,612 | INFO     | intersect: 109770023717.70006
[2025-07-27 05:08:09] 2025-07-27 09:07:37,613 | INFO     | chi2: 0.1060472640418813
[2025-07-27 05:08:09] 2025-07-27 09:07:37,613 | INFO     | -- intersect: 109770023717.70006
[2025-07-27 05:08:09] 2025-07-27 09:07:37,613 | INFO     | current memory leak: -62.60 B/s (using 82 data points, chi2=0.11)
[2025-07-27 05:08:09] 2025-07-27 09:07:37,613 | INFO     | could have reported an average CPU frequency of 2028 MHz (6 samples)
[2025-07-27 05:08:09] 2025-07-27 09:07:37,614 | INFO     | ..............................
[2025-07-27 05:08:09] 2025-07-27 09:07:37,614 | INFO     | . Timing measurements:
[2025-07-27 05:08:09] 2025-07-27 09:07:37,614 | INFO     | . get job = 0 s
[2025-07-27 05:08:09] 2025-07-27 09:07:37,614 | INFO     | . initial setup = 2 s
[2025-07-27 05:08:09] 2025-07-27 09:07:37,614 | INFO     | . payload setup = 9 s
[2025-07-27 05:08:09] 2025-07-27 09:07:37,614 | INFO     | . stage-in = 0 s
[2025-07-27 05:08:09] 2025-07-27 09:07:37,614 | INFO     | . payload execution = 5410 s
[2025-07-27 05:08:09] 2025-07-27 09:07:37,614 | INFO     | . stage-out = 0 s
[2025-07-27 05:08:09] 2025-07-27 09:07:37,614 | INFO     | . log creation = 0 s
[2025-07-27 05:08:09] 2025-07-27 09:07:37,614 | INFO     | ..............................
[2025-07-27 05:08:09] 2025-07-27 09:07:38,104 | INFO     | 
[2025-07-27 05:08:09] 2025-07-27 09:07:38,105 | INFO     | job summary report
[2025-07-27 05:08:09] 2025-07-27 09:07:38,105 | INFO     | --------------------------------------------------
[2025-07-27 05:08:09] 2025-07-27 09:07:38,105 | INFO     | PanDA job id: 6746065061
[2025-07-27 05:08:09] 2025-07-27 09:07:38,105 | INFO     | task id: 45759671
[2025-07-27 05:08:09] 2025-07-27 09:07:38,105 | INFO     | errors: (none)
[2025-07-27 05:08:09] 2025-07-27 09:07:38,105 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 05:08:09] 2025-07-27 09:07:38,106 | INFO     | pilot state: finished 
[2025-07-27 05:08:09] 2025-07-27 09:07:38,106 | INFO     | transexitcode: 0
[2025-07-27 05:08:09] 2025-07-27 09:07:38,106 | INFO     | exeerrorcode: 0
[2025-07-27 05:08:09] 2025-07-27 09:07:38,106 | INFO     | exeerrordiag: 
[2025-07-27 05:08:09] 2025-07-27 09:07:38,106 | INFO     | exitcode: 0
[2025-07-27 05:08:09] 2025-07-27 09:07:38,106 | INFO     | exitmsg: OK
[2025-07-27 05:08:09] 2025-07-27 09:07:38,107 | INFO     | cpuconsumptiontime: 58720 s
[2025-07-27 05:08:09] 2025-07-27 09:07:38,107 | INFO     | nevents: 400
[2025-07-27 05:08:09] 2025-07-27 09:07:38,107 | INFO     | neventsw: 0
[2025-07-27 05:08:09] 2025-07-27 09:07:38,107 | INFO     | pid: 16740
[2025-07-27 05:08:09] 2025-07-27 09:07:38,107 | INFO     | pgrp: 16740
[2025-07-27 05:08:09] 2025-07-27 09:07:38,107 | INFO     | corecount: 12
[2025-07-27 05:08:09] 2025-07-27 09:07:38,107 | INFO     | event service: False
[2025-07-27 05:08:09] 2025-07-27 09:07:38,108 | INFO     | sizes: {0: 2397240, 1: 2397439, 6: 2397701, 11: 2397729, 5423: 2424266, 5426: 2433448, 5431: 2433586}
[2025-07-27 05:08:09] 2025-07-27 09:07:38,108 | INFO     | --------------------------------------------------
[2025-07-27 05:08:09] 2025-07-27 09:07:38,108 | INFO     | 
[2025-07-27 05:08:09] 2025-07-27 09:07:38,108 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 05:08:09] 2025-07-27 09:07:38,133 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 05:08:09] 2025-07-27 09:07:38,134 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 05:08:09] 2025-07-27 09:07:38,134 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 05:08:09] 2025-07-27 09:07:38,134 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 05:08:09] 2025-07-27 09:07:38,134 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 05:08:09] 2025-07-27 09:07:38,134 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 05:08:09] 2025-07-27 09:07:38,135 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 05:08:09] 2025-07-27 09:07:38,135 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 05:08:09] 2025-07-27 09:07:38,135 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 05:08:09] 2025-07-27 09:07:38,135 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 05:08:09] 2025-07-27 09:07:38,135 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 05:08:09] 2025-07-27 09:07:38,135 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 05:08:09] 2025-07-27 09:07:38,136 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 05:08:09] 2025-07-27 09:07:38,136 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 05:08:09] 2025-07-27 09:07:38,136 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 05:08:09] 2025-07-27 09:07:38,136 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 05:08:09] 2025-07-27 09:07:38,136 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 05:08:09] 2025-07-27 09:07:38,136 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 05:08:09] 2025-07-27 09:07:38,137 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 05:08:09] 2025-07-27 09:07:38,137 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 05:08:09] 2025-07-27 09:07:38,137 | INFO     | job 6746065061 has completed (purged errors)
[2025-07-27 05:08:09] 2025-07-27 09:07:38,137 | INFO     | overall cleanup function is called
[2025-07-27 05:08:09] 2025-07-27 09:07:39,145 | INFO     | --- collectZombieJob: --- 10, [16740]
[2025-07-27 05:08:09] 2025-07-27 09:07:39,145 | INFO     | zombie collector waiting for pid 16740
[2025-07-27 05:08:09] 2025-07-27 09:07:39,145 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 05:08:09] 2025-07-27 09:07:39,146 | INFO     | collected zombie processes
[2025-07-27 05:08:09] 2025-07-27 09:07:39,146 | INFO     | will attempt to kill all subprocesses of pid=16740
[2025-07-27 05:08:09] 2025-07-27 09:07:39,239 | INFO     | process IDs to be killed: [16740] (in reverse order)
[2025-07-27 05:08:09] 2025-07-27 09:07:39,295 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 05:08:09] 2025-07-27 09:07:39,295 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 05:08:09] 2025-07-27 09:07:39,299 | INFO     | did not find any defunct processes belonging to 16740
[2025-07-27 05:08:09] 2025-07-27 09:07:39,302 | INFO     | did not find any defunct processes belonging to 16740
[2025-07-27 05:08:09] 2025-07-27 09:07:39,302 | INFO     | ready for new job
[2025-07-27 05:08:09] 2025-07-27 09:07:39,302 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 05:08:09] 2025-07-27 09:07:39,303 | INFO     | ***************************************
[2025-07-27 05:08:09] 2025-07-27 09:07:39,303 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 05:08:09] 2025-07-27 09:07:39,304 | INFO     | ***************************************
[2025-07-27 05:08:09] 2025-07-27 09:07:39,304 | INFO     | 
[2025-07-27 05:08:09] 2025-07-27 09:07:39,304 | INFO     | architecture information:
[2025-07-27 05:08:09] 2025-07-27 09:07:39,305 | INFO     | executing command: cat /etc/os-release
[2025-07-27 05:08:09] 2025-07-27 09:07:39,320 | INFO     | cat /etc/os-release:
[2025-07-27 05:08:09] NAME="CentOS Linux"
[2025-07-27 05:08:09] VERSION="7 (Core)"
[2025-07-27 05:08:09] ID="centos"
[2025-07-27 05:08:09] ID_LIKE="rhel fedora"
[2025-07-27 05:08:09] VERSION_ID="7"
[2025-07-27 05:08:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 05:08:09] ANSI_COLOR="0;31"
[2025-07-27 05:08:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 05:08:09] HOME_URL="https://www.centos.org/"
[2025-07-27 05:08:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 05:08:09] 
[2025-07-27 05:08:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 05:08:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 05:08:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 05:08:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 05:08:09] 
[2025-07-27 05:08:09] 2025-07-27 09:07:39,321 | INFO     | ***************************************
[2025-07-27 05:08:09] 2025-07-27 09:07:39,824 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 05:08:09] 2025-07-27 09:07:39,843 | INFO     | sufficient remaining disk space (29368516608 B)
[2025-07-27 05:08:09] 2025-07-27 09:07:39,844 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 05:08:09] 2025-07-27 09:07:39,844 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 05:08:09] 2025-07-27 09:07:39,844 | INFO     | update_server=False
[2025-07-27 05:08:09] 2025-07-27 09:07:39,845 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 05:08:09] 2025-07-27 09:07:39,845 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 05:08:09] 2025-07-27 09:07:39,845 | INFO     | aborting loop
[2025-07-27 05:08:09] 2025-07-27 09:07:40,297 | INFO     | all data control threads have been joined
[2025-07-27 05:08:09] 2025-07-27 09:07:40,476 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 05:08:09] 2025-07-27 09:07:40,738 | INFO     | all job control threads have been joined
[2025-07-27 05:08:09] 2025-07-27 09:07:40,846 | INFO     | [job] retrieve thread has finished
[2025-07-27 05:08:09] 2025-07-27 09:07:40,850 | INFO     | [job] job monitor thread has finished
[2025-07-27 05:08:09] 2025-07-27 09:07:41,021 | INFO     | [payload] validate_post thread has finished
[2025-07-27 05:08:09] 2025-07-27 09:07:41,091 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 05:08:09] 2025-07-27 09:07:41,100 | INFO     | all payload control threads have been joined
[2025-07-27 05:08:09] 2025-07-27 09:07:41,122 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 05:08:09] 2025-07-27 09:07:41,299 | INFO     | [data] control thread has finished
[2025-07-27 05:08:09] 2025-07-27 09:07:41,379 | INFO     | [data] copytool_in thread has finished
[2025-07-27 05:08:09] 2025-07-27 09:07:41,650 | INFO     | [payload] failed_post thread has finished
[2025-07-27 05:08:09] 2025-07-27 09:07:41,743 | INFO     | [job] control thread has finished
[2025-07-27 05:08:09] 2025-07-27 09:07:41,850 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 05:08:09] 2025-07-27 09:07:42,106 | INFO     | [payload] control thread has finished
[2025-07-27 05:08:09] 2025-07-27 09:07:42,176 | INFO     | [job] validate thread has finished
[2025-07-27 05:08:09] 2025-07-27 09:07:42,480 | INFO     | [data] copytool_out thread has finished
[2025-07-27 05:08:09] 2025-07-27 09:07:42,708 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 05:08:09] 2025-07-27 09:07:43,051 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 05:08:09] 2025-07-27 09:07:43,713 | INFO     | [job] queue monitor thread has finished
[2025-07-27 05:08:09] 2025-07-27 09:07:47,053 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 05:08:09] 2025-07-27 09:07:50,629 | INFO     | job.realtimelogging is not enabled
[2025-07-27 05:08:09] 2025-07-27 09:07:51,634 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 05:08:09] 2025-07-27 09:07:52,582 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140245981615936)>', '<ExcThread(monitor, started 140245009938176)>']
[2025-07-27 05:08:09] 2025-07-27 09:07:57,597 | INFO     | all workflow threads have been joined
[2025-07-27 05:08:09] 2025-07-27 09:07:57,597 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 05:08:09] 2025-07-27 09:07:57,598 | INFO     | traces error code: 0
[2025-07-27 05:08:09] 2025-07-27 09:07:57,598 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 05:08:09] 2025-07-27 09:08:09,551 | INFO     | PID=10271 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-27 05:08:09] 2025-07-27 09:08:09,551 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 05:08:09] 2025-07-27 09:08:09,552 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 05:08:09] 2025-07-27 09:08:09,552 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 05:08:09] 2025-07-27 09:08:09,552 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 05:08:09] 2025-07-27 09:08:09,552 | INFO     | [monitor] control thread has ended
[2025-07-27 05:08:09] 2025-07-27 09:08:09,652 [wrapper] ==== pilot stdout END ====
[2025-07-27 05:08:09] 2025-07-27 09:08:09,655 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 05:08:09] 2025-07-27 09:08:09,659 [wrapper] pilotpid: 10271
[2025-07-27 05:08:09] 2025-07-27 09:08:09,663 [wrapper] Pilot exit status: 0
[2025-07-27 05:08:09] 2025-07-27 09:08:09,679 [wrapper] pandaids: 6746065061
[2025-07-27 05:08:09] 2025-07-27 09:08:09,722 [wrapper] cleanup supervisor_pilot  8746 10272
[2025-07-27 05:08:09] 2025-07-27 09:08:09,726 [wrapper] Test setup, not cleaning
[2025-07-27 05:08:09] 2025-07-27 09:08:09,729 [wrapper] apfmon messages muted
[2025-07-27 05:08:09] 2025-07-27 09:08:09,733 [wrapper] ==== wrapper stdout END ====
[2025-07-27 05:08:09] 2025-07-27 09:08:09,737 [wrapper] ==== wrapper stderr END ====
[2025-07-27 05:08:09]  *** Error codes and diagnostics ***
[2025-07-27 05:08:09]     "exeErrorCode": 0,
[2025-07-27 05:08:09]     "exeErrorDiag": "",
[2025-07-27 05:08:09]     "pilotErrorCode": 0,
[2025-07-27 05:08:09]     "pilotErrorDiag": "",
[2025-07-27 05:08:09]  *** Listing of results directory ***
[2025-07-27 05:08:09] total 402160
[2025-07-27 05:08:09] -rw-r--r-- 1 boincer umatlas    530466 Jul 27 01:07 pilot3.tar.gz
[2025-07-27 05:08:09] -rw-r--r-- 1 boincer umatlas      5112 Jul 27 01:21 queuedata.json
[2025-07-27 05:08:09] -rwx------ 1 boincer umatlas     36292 Jul 27 01:21 runpilot2-wrapper.sh
[2025-07-27 05:08:09] -rw-r--r-- 1 boincer umatlas       100 Jul 27 03:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 05:08:09] -rwxr-xr-x 1 boincer umatlas      7986 Jul 27 03:36 run_atlas
[2025-07-27 05:08:09] -rw-r--r-- 1 boincer umatlas       105 Jul 27 03:36 job.xml
[2025-07-27 05:08:09] -rw-r--r-- 2 boincer umatlas 239226138 Jul 27 03:36 EVNT.45759667._000001.pool.root.1
[2025-07-27 05:08:09] drwxrwx--x 2 boincer umatlas      4096 Jul 27 03:36 shared
[2025-07-27 05:08:09] -rw-r--r-- 2 boincer umatlas    542886 Jul 27 03:36 input.tar.gz
[2025-07-27 05:08:09] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 03:36 start_atlas.sh
[2025-07-27 05:08:09] -rw-r--r-- 1 boincer umatlas         0 Jul 27 03:36 boinc_lockfile
[2025-07-27 05:08:09] -rw-r--r-- 1 boincer umatlas      2555 Jul 27 03:36 pandaJob.out
[2025-07-27 05:08:09] -rw------- 1 boincer umatlas    980125 Jul 27 03:36 agis_schedconf.cvmfs.json
[2025-07-27 05:08:09] -rw------- 1 boincer umatlas   1593052 Jul 27 03:36 agis_ddmendpoints.agis.ALL.json
[2025-07-27 05:08:09] drwx------ 4 boincer umatlas      4096 Jul 27 03:36 pilot3
[2025-07-27 05:08:09] -rw-r--r-- 1 boincer umatlas      5866 Jul 27 05:01 init_data.xml
[2025-07-27 05:08:09] -rw------- 1 boincer umatlas 166952718 Jul 27 05:07 HITS.45759671._000012.pool.root.1
[2025-07-27 05:08:09] -rw-r--r-- 1 boincer umatlas       529 Jul 27 05:07 boinc_task_state.xml
[2025-07-27 05:08:09] -rw------- 1 boincer umatlas      1048 Jul 27 05:07 memory_monitor_summary.json
[2025-07-27 05:08:09] -rw------- 1 boincer umatlas    370110 Jul 27 05:07 log.45759671._000012.job.log.tgz.1
[2025-07-27 05:08:09] -rw------- 1 boincer umatlas      7840 Jul 27 05:07 heartbeat.json
[2025-07-27 05:08:09] -rw-r--r-- 1 boincer umatlas      8192 Jul 27 05:07 boinc_mmap_file
[2025-07-27 05:08:09] -rw-r--r-- 1 boincer umatlas        27 Jul 27 05:07 wrapper_checkpoint.txt
[2025-07-27 05:08:09] -rw------- 1 boincer umatlas        95 Jul 27 05:08 pilot_heartbeat.json
[2025-07-27 05:08:09] -rw------- 1 boincer umatlas       745 Jul 27 05:08 pilotlog.txt
[2025-07-27 05:08:09] -rw------- 1 boincer umatlas    512403 Jul 27 05:08 log.45759671._000012.job.log.1
[2025-07-27 05:08:09] -rw------- 1 boincer umatlas       357 Jul 27 05:08 output.list
[2025-07-27 05:08:09] -rw-r--r-- 1 boincer umatlas       620 Jul 27 05:08 runtime_log
[2025-07-27 05:08:09] -rw------- 1 boincer umatlas    901120 Jul 27 05:08 result.tar.gz
[2025-07-27 05:08:09] -rw------- 1 boincer umatlas       658 Jul 27 05:08 lI8NDm5z8z7n9Rq4apOajLDm4fhM0noT9bVof3QYDmL01KDmJAUgZn.diag
[2025-07-27 05:08:09] -rw-r--r-- 1 boincer umatlas      8657 Jul 27 05:08 runtime_log.err
[2025-07-27 05:08:09] -rw-r--r-- 1 boincer umatlas     21410 Jul 27 05:08 stderr.txt
[2025-07-27 05:08:09] HITS file was successfully produced:
[2025-07-27 05:08:09] -rw------- 1 boincer umatlas 166952718 Jul 27 05:07 shared/HITS.pool.root.1
[2025-07-27 05:08:09]  *** Contents of shared directory: ***
[2025-07-27 05:08:09] total 398088
[2025-07-27 05:08:09] -rw-r--r-- 2 boincer umatlas 239226138 Jul 27 03:36 ATLAS.root_0
[2025-07-27 05:08:09] -rw-r--r-- 2 boincer umatlas    542886 Jul 27 03:36 input.tar.gz
[2025-07-27 05:08:09] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 03:36 start_atlas.sh
[2025-07-27 05:08:09] -rw------- 1 boincer umatlas 166952718 Jul 27 05:07 HITS.pool.root.1
[2025-07-27 05:08:09] -rw------- 1 boincer umatlas    901120 Jul 27 05:08 result.tar.gz
05:08:11 (6681): run_atlas exited; CPU time 58698.101609
05:08:11 (6681): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN