Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
11:28:51 (365571): wrapper (7.7.26015): starting
11:28:51 (365571): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 11:28:51] Arguments: --nthreads 12
[2025-07-27 11:28:51] Threads: 12
[2025-07-27 11:28:51] Checking for CVMFS
[2025-07-27 11:28:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 11:28:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 11:28:51] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 11:28:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 11:28:51] 2.13.1.0 5295 3015 56324 148818 1 57 5278031 6144000 3668 130560 0 12715537 99.915 879583 1008 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-07-27 11:28:51] CVMFS is ok
[2025-07-27 11:28:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 11:28:51] Small home clusters do not require a local http proxy but it is suggested if
[2025-07-27 11:28:51] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-07-27 11:28:51] Further information can be found at the LHC@home message board.
[2025-07-27 11:28:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 11:28:51] Checking for apptainer binary...
[2025-07-27 11:28:51] apptainer is not installed, using version from CVMFS
[2025-07-27 11:28:51] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 11:28:52] XeonFire
[2025-07-27 11:28:52] apptainer works
[2025-07-27 11:28:53] Set ATHENA_PROC_NUMBER=12
[2025-07-27 11:28:53] Set ATHENA_CORE_NUMBER=12
[2025-07-27 11:28:53] Starting ATLAS job with PandaID=6745965977
[2025-07-27 11:28:53] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 12:46:41]  *** The last 200 lines of the pilot log: ***
[2025-07-27 12:46:41]  lfn=log.45758307._000060.job.log.tgz.1
[2025-07-27 12:46:41]  mtime=0
[2025-07-27 12:46:41]  protocol_id=None
[2025-07-27 12:46:41]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 12:46:41]  replicas=None
[2025-07-27 12:46:41]  scope=mc23_13p6TeV
[2025-07-27 12:46:41]  status=None
[2025-07-27 12:46:41]  status_code=0
[2025-07-27 12:46:41]  storage_token=
[2025-07-27 12:46:41]  surl=/var/lib/boinc-client/slots/1/PanDA_Pilot-6745965977/log.45758307._000060.job.log.tgz.1
[2025-07-27 12:46:41]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ca/94/log.45758307._000060.job.log.tgz.1
[2025-07-27 12:46:41]  workdir=None
[2025-07-27 12:46:41] ]
[2025-07-27 12:46:41] 2025-07-27 17:46:02,826 | INFO     | transferring file log.45758307._000060.job.log.tgz.1 from /var/lib/boinc-client/slots/1/PanDA_Pilot-6745965977/log.45758307._000060.job.log.tgz.1 to /var/lib/boinc
[2025-07-27 12:46:41] 2025-07-27 17:46:02,827 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/1/PanDA_Pilot-6745965977/log.45758307._000060.job.log.tgz.1 /var/lib/boinc-client/slots/1/log.457583
[2025-07-27 12:46:41] 2025-07-27 17:46:02,848 | INFO     | adding to output.list: log.45758307._000060.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ca/94/log.45758307._000060.job.log.tg
[2025-07-27 12:46:41] 2025-07-27 17:46:02,849 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 12:46:41] 2025-07-27 17:46:02,849 | INFO     | summary of transferred files:
[2025-07-27 12:46:41] 2025-07-27 17:46:02,849 | INFO     |  -- lfn=log.45758307._000060.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 12:46:41] 2025-07-27 17:46:02,849 | INFO     | stage-out finished correctly
[2025-07-27 12:46:41] 2025-07-27 17:46:03,476 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 12:46:41] 2025-07-27 17:46:03,584 | INFO     | job 6745965977 has state=finished
[2025-07-27 12:46:41] 2025-07-27 17:46:03,584 | INFO     | preparing for final server update for job 6745965977 in state='finished'
[2025-07-27 12:46:41] 2025-07-27 17:46:04,098 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-27 12:46:41] 2025-07-27 17:46:04,099 | INFO     | this job has now completed (state=finished)
[2025-07-27 12:46:41] 2025-07-27 17:46:04,099 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 12:46:41] 2025-07-27 17:46:04,099 | INFO     | log transfer has been attempted: DONE
[2025-07-27 12:46:41] 2025-07-27 17:46:04,100 | INFO     | job 6745965977 has finished - writing final server update
[2025-07-27 12:46:41] 2025-07-27 17:46:04,100 | INFO     | total number of processed events: 400 (read)
[2025-07-27 12:46:41] 2025-07-27 17:46:04,101 | INFO     | executing command: lscpu
[2025-07-27 12:46:41] 2025-07-27 17:46:04,162 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 12:46:41] 2025-07-27 17:46:04,274 | WARNING  | process 376419 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 12:46:41] 2025-07-27 17:46:04,275 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6745965977/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 12:46:41] 2025-07-27 17:46:04,664 | INFO     | number of running child processes to parent process 376419: 1
[2025-07-27 12:46:41] 2025-07-27 17:46:04,665 | INFO     | maximum number of monitored processes: 6
[2025-07-27 12:46:41] 2025-07-27 17:46:07,168 | INFO     | monitor loop #340: job 0:6745965977 is in state 'finished'
[2025-07-27 12:46:41] 2025-07-27 17:46:07,168 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 12:46:41] 2025-07-27 17:46:08,712 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 12:46:41] 2025-07-27 17:46:08,724 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2355.7219687499996
[2025-07-27 12:46:41] 2025-07-27 17:46:08,737 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6745965977/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 12:46:41] 2025-07-27 17:46:08,737 | INFO     | extracted standard info from prmon json
[2025-07-27 12:46:41] 2025-07-27 17:46:08,738 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 12:46:41] 2025-07-27 17:46:08,738 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 12:46:41] 2025-07-27 17:46:08,738 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 12:46:41] 2025-07-27 17:46:08,738 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 12:46:41] 2025-07-27 17:46:08,740 | INFO     | fitting pss+swap vs Time
[2025-07-27 12:46:41] 2025-07-27 17:46:08,741 | INFO     | sum of square deviations: 101843770.0
[2025-07-27 12:46:41] 2025-07-27 17:46:08,741 | INFO     | sum of deviations: -7750075742.000001
[2025-07-27 12:46:41] 2025-07-27 17:46:08,741 | INFO     | mean x: 1753636154.0
[2025-07-27 12:46:41] 2025-07-27 17:46:08,741 | INFO     | mean y: 2814796.5942028984
[2025-07-27 12:46:41] 2025-07-27 17:46:08,742 | INFO     | -- intersect: 133450477009.11421
[2025-07-27 12:46:41] 2025-07-27 17:46:08,742 | INFO     | intersect: 133450477009.11421
[2025-07-27 12:46:41] 2025-07-27 17:46:08,742 | INFO     | chi2: 0.06992128407924295
[2025-07-27 12:46:41] 2025-07-27 17:46:08,742 | INFO     | -- intersect: 133450477009.11421
[2025-07-27 12:46:41] 2025-07-27 17:46:08,742 | INFO     | current memory leak: -76.10 B/s (using 69 data points, chi2=0.07)
[2025-07-27 12:46:41] 2025-07-27 17:46:08,743 | INFO     | could have reported an average CPU frequency of 2438 MHz (6 samples)
[2025-07-27 12:46:41] 2025-07-27 17:46:08,743 | INFO     | ..............................
[2025-07-27 12:46:41] 2025-07-27 17:46:08,743 | INFO     | . Timing measurements:
[2025-07-27 12:46:41] 2025-07-27 17:46:08,743 | INFO     | . get job = 0 s
[2025-07-27 12:46:41] 2025-07-27 17:46:08,743 | INFO     | . initial setup = 3 s
[2025-07-27 12:46:41] 2025-07-27 17:46:08,743 | INFO     | . payload setup = 8 s
[2025-07-27 12:46:41] 2025-07-27 17:46:08,743 | INFO     | . stage-in = 0 s
[2025-07-27 12:46:41] 2025-07-27 17:46:08,743 | INFO     | . payload execution = 4588 s
[2025-07-27 12:46:41] 2025-07-27 17:46:08,744 | INFO     | . stage-out = 0 s
[2025-07-27 12:46:41] 2025-07-27 17:46:08,744 | INFO     | . log creation = 0 s
[2025-07-27 12:46:41] 2025-07-27 17:46:08,744 | INFO     | ..............................
[2025-07-27 12:46:41] 2025-07-27 17:46:08,988 | INFO     | 
[2025-07-27 12:46:41] 2025-07-27 17:46:08,988 | INFO     | job summary report
[2025-07-27 12:46:41] 2025-07-27 17:46:08,988 | INFO     | --------------------------------------------------
[2025-07-27 12:46:41] 2025-07-27 17:46:08,988 | INFO     | PanDA job id: 6745965977
[2025-07-27 12:46:41] 2025-07-27 17:46:08,988 | INFO     | task id: 45758307
[2025-07-27 12:46:41] 2025-07-27 17:46:08,989 | INFO     | errors: (none)
[2025-07-27 12:46:41] 2025-07-27 17:46:08,989 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 12:46:41] 2025-07-27 17:46:08,989 | INFO     | pilot state: finished 
[2025-07-27 12:46:41] 2025-07-27 17:46:08,989 | INFO     | transexitcode: 0
[2025-07-27 12:46:41] 2025-07-27 17:46:08,989 | INFO     | exeerrorcode: 0
[2025-07-27 12:46:41] 2025-07-27 17:46:08,989 | INFO     | exeerrordiag: 
[2025-07-27 12:46:41] 2025-07-27 17:46:08,989 | INFO     | exitcode: 0
[2025-07-27 12:46:41] 2025-07-27 17:46:08,989 | INFO     | exitmsg: OK
[2025-07-27 12:46:41] 2025-07-27 17:46:08,990 | INFO     | cpuconsumptiontime: 49589 s
[2025-07-27 12:46:41] 2025-07-27 17:46:08,990 | INFO     | nevents: 400
[2025-07-27 12:46:41] 2025-07-27 17:46:08,990 | INFO     | neventsw: 0
[2025-07-27 12:46:41] 2025-07-27 17:46:08,990 | INFO     | pid: 376419
[2025-07-27 12:46:41] 2025-07-27 17:46:08,990 | INFO     | pgrp: 376419
[2025-07-27 12:46:41] 2025-07-27 17:46:08,990 | INFO     | corecount: 12
[2025-07-27 12:46:41] 2025-07-27 17:46:08,990 | INFO     | event service: False
[2025-07-27 12:46:41] 2025-07-27 17:46:08,990 | INFO     | sizes: {0: 2397460, 5: 2397722, 11: 2397778, 4601: 2423835, 4602: 2432903, 4608: 2433041}
[2025-07-27 12:46:41] 2025-07-27 17:46:08,990 | INFO     | --------------------------------------------------
[2025-07-27 12:46:41] 2025-07-27 17:46:08,991 | INFO     | 
[2025-07-27 12:46:41] 2025-07-27 17:46:08,991 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/1
[2025-07-27 12:46:41] 2025-07-27 17:46:09,016 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 12:46:41] 2025-07-27 17:46:09,016 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 12:46:41] 2025-07-27 17:46:09,016 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 12:46:41] 2025-07-27 17:46:09,016 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 12:46:41] 2025-07-27 17:46:09,017 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 12:46:41] 2025-07-27 17:46:09,017 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 12:46:41] 2025-07-27 17:46:09,017 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 12:46:41] 2025-07-27 17:46:09,017 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 12:46:41] 2025-07-27 17:46:09,017 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 12:46:41] 2025-07-27 17:46:09,017 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 12:46:41] 2025-07-27 17:46:09,017 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 12:46:41] 2025-07-27 17:46:09,017 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 12:46:41] 2025-07-27 17:46:09,017 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 12:46:41] 2025-07-27 17:46:09,017 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 12:46:41] 2025-07-27 17:46:09,018 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 12:46:41] 2025-07-27 17:46:09,018 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 12:46:41] 2025-07-27 17:46:09,018 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 12:46:41] 2025-07-27 17:46:09,018 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 12:46:41] 2025-07-27 17:46:09,018 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 12:46:41] 2025-07-27 17:46:09,018 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 12:46:41] 2025-07-27 17:46:09,018 | INFO     | job 6745965977 has completed (purged errors)
[2025-07-27 12:46:41] 2025-07-27 17:46:09,018 | INFO     | overall cleanup function is called
[2025-07-27 12:46:41] 2025-07-27 17:46:10,027 | INFO     | --- collectZombieJob: --- 10, [376419]
[2025-07-27 12:46:41] 2025-07-27 17:46:10,027 | INFO     | zombie collector waiting for pid 376419
[2025-07-27 12:46:41] 2025-07-27 17:46:10,028 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 12:46:41] 2025-07-27 17:46:10,028 | INFO     | collected zombie processes
[2025-07-27 12:46:41] 2025-07-27 17:46:10,028 | INFO     | will attempt to kill all subprocesses of pid=376419
[2025-07-27 12:46:41] 2025-07-27 17:46:10,409 | INFO     | process IDs to be killed: [376419] (in reverse order)
[2025-07-27 12:46:41] 2025-07-27 17:46:10,531 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 12:46:41] 2025-07-27 17:46:10,532 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 12:46:41] 2025-07-27 17:46:10,540 | INFO     | did not find any defunct processes belonging to 376419
[2025-07-27 12:46:41] 2025-07-27 17:46:10,548 | INFO     | did not find any defunct processes belonging to 376419
[2025-07-27 12:46:41] 2025-07-27 17:46:10,548 | INFO     | ready for new job
[2025-07-27 12:46:41] 2025-07-27 17:46:10,548 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 12:46:41] 2025-07-27 17:46:10,550 | INFO     | ***************************************
[2025-07-27 12:46:41] 2025-07-27 17:46:10,550 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 12:46:41] 2025-07-27 17:46:10,550 | INFO     | ***************************************
[2025-07-27 12:46:41] 2025-07-27 17:46:10,550 | INFO     | 
[2025-07-27 12:46:41] 2025-07-27 17:46:10,554 | INFO     | architecture information:
[2025-07-27 12:46:41] 2025-07-27 17:46:10,555 | INFO     | executing command: cat /etc/os-release
[2025-07-27 12:46:41] 2025-07-27 17:46:10,572 | INFO     | cat /etc/os-release:
[2025-07-27 12:46:41] NAME="CentOS Linux"
[2025-07-27 12:46:41] VERSION="7 (Core)"
[2025-07-27 12:46:41] ID="centos"
[2025-07-27 12:46:41] ID_LIKE="rhel fedora"
[2025-07-27 12:46:41] VERSION_ID="7"
[2025-07-27 12:46:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 12:46:41] ANSI_COLOR="0;31"
[2025-07-27 12:46:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 12:46:41] HOME_URL="https://www.centos.org/"
[2025-07-27 12:46:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 12:46:41] 
[2025-07-27 12:46:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 12:46:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 12:46:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 12:46:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 12:46:41] 
[2025-07-27 12:46:41] 2025-07-27 17:46:10,572 | INFO     | ***************************************
[2025-07-27 12:46:41] 2025-07-27 17:46:11,075 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/1
[2025-07-27 12:46:41] 2025-07-27 17:46:11,093 | INFO     | sufficient remaining disk space (1818478247936 B)
[2025-07-27 12:46:41] 2025-07-27 17:46:11,094 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 12:46:41] 2025-07-27 17:46:11,094 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 12:46:41] 2025-07-27 17:46:11,094 | INFO     | update_server=False
[2025-07-27 12:46:41] 2025-07-27 17:46:11,094 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 12:46:41] 2025-07-27 17:46:11,095 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 12:46:41] 2025-07-27 17:46:11,095 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 12:46:41] 2025-07-27 17:46:11,095 | INFO     | aborting loop
[2025-07-27 12:46:41] 2025-07-27 17:46:11,544 | INFO     | all payload control threads have been joined
[2025-07-27 12:46:41] 2025-07-27 17:46:11,712 | INFO     | all job control threads have been joined
[2025-07-27 12:46:41] 2025-07-27 17:46:12,013 | INFO     | all data control threads have been joined
[2025-07-27 12:46:41] 2025-07-27 17:46:12,095 | INFO     | [job] retrieve thread has finished
[2025-07-27 12:46:41] 2025-07-27 17:46:12,101 | INFO     | [job] job monitor thread has finished
[2025-07-27 12:46:41] 2025-07-27 17:46:12,320 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 12:46:41] 2025-07-27 17:46:12,488 | INFO     | [data] copytool_in thread has finished
[2025-07-27 12:46:41] 2025-07-27 17:46:12,550 | INFO     | [payload] control thread has finished
[2025-07-27 12:46:41] 2025-07-27 17:46:12,624 | INFO     | [payload] validate_post thread has finished
[2025-07-27 12:46:41] 2025-07-27 17:46:12,717 | INFO     | [job] control thread has finished
[2025-07-27 12:46:41] 2025-07-27 17:46:12,739 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 12:46:41] 2025-07-27 17:46:12,827 | INFO     | [payload] failed_post thread has finished
[2025-07-27 12:46:41] 2025-07-27 17:46:13,018 | INFO     | [data] control thread has finished
[2025-07-27 12:46:41] 2025-07-27 17:46:13,101 | INFO     | [data] copytool_out thread has finished
[2025-07-27 12:46:41] 2025-07-27 17:46:13,204 | INFO     | [job] validate thread has finished
[2025-07-27 12:46:41] 2025-07-27 17:46:13,377 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 12:46:41] 2025-07-27 17:46:13,407 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 12:46:41] 2025-07-27 17:46:13,864 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 12:46:41] 2025-07-27 17:46:14,091 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 12:46:41] 2025-07-27 17:46:14,870 | INFO     | [job] queue monitor thread has finished
[2025-07-27 12:46:41] 2025-07-27 17:46:18,097 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 12:46:41] 2025-07-27 17:46:18,170 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 125598699951936)>', '<ExcThread(monitor, started 125597703456512)>']
[2025-07-27 12:46:41] 2025-07-27 17:46:23,184 | INFO     | all workflow threads have been joined
[2025-07-27 12:46:41] 2025-07-27 17:46:23,184 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 12:46:41] 2025-07-27 17:46:23,184 | INFO     | traces error code: 0
[2025-07-27 12:46:41] 2025-07-27 17:46:23,184 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 12:46:41] 2025-07-27 17:46:41,616 | INFO     | PID=369481 has CPU usage=7.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 12:46:41] 2025-07-27 17:46:41,617 | INFO     | .. there are 5 such processes running
[2025-07-27 12:46:41] 2025-07-27 17:46:41,617 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 12:46:41] 2025-07-27 17:46:41,617 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 12:46:41] 2025-07-27 17:46:41,617 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 12:46:41] 2025-07-27 17:46:41,617 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 12:46:41] 2025-07-27 17:46:41,617 | INFO     | [monitor] control thread has ended
[2025-07-27 12:46:41] 2025-07-27 17:46:41,730 [wrapper] ==== pilot stdout END ====
[2025-07-27 12:46:41] 2025-07-27 17:46:41,733 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 12:46:41] 2025-07-27 17:46:41,736 [wrapper] pilotpid: 369481
[2025-07-27 12:46:41] 2025-07-27 17:46:41,739 [wrapper] Pilot exit status: 0
[2025-07-27 12:46:41] 2025-07-27 17:46:41,758 [wrapper] pandaids: 6745965977
[2025-07-27 12:46:41] 2025-07-27 17:46:41,821 [wrapper] cleanup supervisor_pilot  493987 369482
[2025-07-27 12:46:41] 2025-07-27 17:46:41,824 [wrapper] Test setup, not cleaning
[2025-07-27 12:46:41] 2025-07-27 17:46:41,827 [wrapper] apfmon messages muted
[2025-07-27 12:46:41] 2025-07-27 17:46:41,830 [wrapper] ==== wrapper stdout END ====
[2025-07-27 12:46:41] 2025-07-27 17:46:41,833 [wrapper] ==== wrapper stderr END ====
[2025-07-27 12:46:41]  *** Error codes and diagnostics ***
[2025-07-27 12:46:41]     "exeErrorCode": 0,
[2025-07-27 12:46:41]     "exeErrorDiag": "",
[2025-07-27 12:46:41]     "pilotErrorCode": 0,
[2025-07-27 12:46:41]     "pilotErrorDiag": "",
[2025-07-27 12:46:41]  *** Listing of results directory ***
[2025-07-27 12:46:41] total 408528
[2025-07-27 12:46:41] -rw-r--r-- 1 mark mark    530466 Jul 26 21:22 pilot3.tar.gz
[2025-07-27 12:46:41] -rw-r--r-- 1 mark mark      5112 Jul 26 21:31 queuedata.json
[2025-07-27 12:46:41] -rwx------ 1 mark mark     36292 Jul 26 21:32 runpilot2-wrapper.sh
[2025-07-27 12:46:41] -rw-rw-r-- 1 mark mark       100 Jul 27 11:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 12:46:41] -rwxr-xr-x 1 mark mark      7986 Jul 27 11:28 run_atlas
[2025-07-27 12:46:41] -rw-rw-r-- 1 mark mark       105 Jul 27 11:28 job.xml
[2025-07-27 12:46:41] -rw-r--r-- 2 mark mark 243794340 Jul 27 11:28 EVNT.45758305._000003.pool.root.1
[2025-07-27 12:46:41] -rw-r--r-- 2 mark mark     15095 Jul 27 11:28 start_atlas.sh
[2025-07-27 12:46:41] drwxrwx--x 2 mark mark      4096 Jul 27 11:28 shared
[2025-07-27 12:46:41] -rw-r--r-- 2 mark mark    542866 Jul 27 11:28 input.tar.gz
[2025-07-27 12:46:41] -rw-rw-r-- 1 mark mark      9229 Jul 27 11:28 init_data.xml
[2025-07-27 12:46:41] -rw-rw-r-- 1 mark mark         0 Jul 27 11:28 boinc_setup_complete
[2025-07-27 12:46:41] -rw-rw-r-- 1 mark mark         0 Jul 27 11:28 boinc_lockfile
[2025-07-27 12:46:41] -rw-rw-r-- 1 mark mark      2546 Jul 27 11:28 pandaJob.out
[2025-07-27 12:46:41] -rw------- 1 mark mark    980125 Jul 27 11:29 agis_schedconf.cvmfs.json
[2025-07-27 12:46:41] -rw------- 1 mark mark   1593052 Jul 27 11:29 agis_ddmendpoints.agis.ALL.json
[2025-07-27 12:46:41] drwx------ 4 mark mark      4096 Jul 27 11:29 pilot3
[2025-07-27 12:46:41] -rw------- 1 mark mark 169018534 Jul 27 12:45 HITS.45758307._000060.pool.root.1
[2025-07-27 12:46:41] -rw-rw-r-- 1 mark mark       530 Jul 27 12:45 boinc_task_state.xml
[2025-07-27 12:46:41] -rw------- 1 mark mark        95 Jul 27 12:45 pilot_heartbeat.json
[2025-07-27 12:46:41] -rw------- 1 mark mark      1032 Jul 27 12:45 memory_monitor_summary.json
[2025-07-27 12:46:41] -rw------- 1 mark mark    360350 Jul 27 12:46 log.45758307._000060.job.log.tgz.1
[2025-07-27 12:46:41] -rw------- 1 mark mark      7775 Jul 27 12:46 heartbeat.json
[2025-07-27 12:46:41] -rw-rw-r-- 1 mark mark        27 Jul 27 12:46 wrapper_checkpoint.txt
[2025-07-27 12:46:41] -rw------- 1 mark mark       821 Jul 27 12:46 pilotlog.txt
[2025-07-27 12:46:41] -rw------- 1 mark mark    457709 Jul 27 12:46 log.45758307._000060.job.log.1
[2025-07-27 12:46:41] -rw------- 1 mark mark       357 Jul 27 12:46 output.list
[2025-07-27 12:46:41] -rw-rw-r-- 1 mark mark       620 Jul 27 12:46 runtime_log
[2025-07-27 12:46:41] -rw------- 1 mark mark    839680 Jul 27 12:46 result.tar.gz
[2025-07-27 12:46:41] -rw-rw-r-- 1 mark mark      8716 Jul 27 12:46 runtime_log.err
[2025-07-27 12:46:41] -rw------- 1 mark mark       645 Jul 27 12:46 pBHLDmnM6z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmTxTLDmdosNlm.diag
[2025-07-27 12:46:41] -rw-rw-r-- 1 mark mark     21784 Jul 27 12:46 stderr.txt
[2025-07-27 12:46:41] -rw-rw-r-- 1 mark mark      8192 Jul 27 12:46 boinc_mmap_file
[2025-07-27 12:46:41] HITS file was successfully produced:
[2025-07-27 12:46:41] -rw------- 1 mark mark 169018534 Jul 27 12:45 shared/HITS.pool.root.1
[2025-07-27 12:46:41]  *** Contents of shared directory: ***
[2025-07-27 12:46:41] total 404520
[2025-07-27 12:46:41] -rw-r--r-- 2 mark mark 243794340 Jul 27 11:28 ATLAS.root_0
[2025-07-27 12:46:41] -rw-r--r-- 2 mark mark     15095 Jul 27 11:28 start_atlas.sh
[2025-07-27 12:46:41] -rw-r--r-- 2 mark mark    542866 Jul 27 11:28 input.tar.gz
[2025-07-27 12:46:41] -rw------- 1 mark mark 169018534 Jul 27 12:45 HITS.pool.root.1
[2025-07-27 12:46:41] -rw------- 1 mark mark    839680 Jul 27 12:46 result.tar.gz
12:46:43 (365571): run_atlas exited; CPU time 49737.489551
12:46:43 (365571): called boinc_finish(0)

</stderr_txt>
]]>

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