Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
03:17:18 (32262): wrapper (7.7.26015): starting
03:17:18 (32262): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 03:17:18] Arguments: --nthreads 8
[2025-07-27 03:17:18] Threads: 8
[2025-07-27 03:17:18] Checking for CVMFS
[2025-07-27 03:17:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 03:17:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 03:17:18] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 03:17:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 03:17:19] 2.11.2.0 3023 111644 84352 148804 1 56 15395134 20275200 1 130560 0 28287374 99.962 9361749 10241 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 03:17:19] CVMFS is ok
[2025-07-27 03:17:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 03:17:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 03:17:19] Further information can be found at the LHC@home message board.
[2025-07-27 03:17:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 03:17:19] Checking for apptainer binary...
[2025-07-27 03:17:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 03:17:19] Running /usr/bin/apptainer --version
[2025-07-27 03:17:19] apptainer version 1.3.2-1.el7
[2025-07-27 03:17:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 03:17:20] c-115-4.aglt2.org
[2025-07-27 03:17:20] apptainer works
[2025-07-27 03:17:21] Set ATHENA_PROC_NUMBER=8
[2025-07-27 03:17:21] Set ATHENA_CORE_NUMBER=8
[2025-07-27 03:17:21] Starting ATLAS job with PandaID=6745955723
[2025-07-27 03:17:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 05:47:54]  *** The last 200 lines of the pilot log: ***
[2025-07-27 05:47:54] 2025-07-27 09:47:17,393 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 05:47:54] 2025-07-27 09:47:19,895 | INFO     | monitor loop #667: job 0:6745955723 is in state 'finished'
[2025-07-27 05:47:54] 2025-07-27 09:47:19,896 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 05:47:54] 2025-07-27 09:47:21,397 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-27 05:47:54] 2025-07-27 09:47:21,401 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1712.5
[2025-07-27 05:47:54] 2025-07-27 09:47:21,403 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745955723/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 05:47:54] 2025-07-27 09:47:21,405 | INFO     | extracted standard info from prmon json
[2025-07-27 05:47:54] 2025-07-27 09:47:21,405 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 05:47:54] 2025-07-27 09:47:21,405 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 05:47:54] 2025-07-27 09:47:21,406 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 05:47:54] 2025-07-27 09:47:21,406 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 05:47:54] 2025-07-27 09:47:21,409 | INFO     | fitting pss+swap vs Time
[2025-07-27 05:47:54] 2025-07-27 09:47:21,410 | INFO     | sum of square deviations: 984941258.0
[2025-07-27 05:47:54] 2025-07-27 09:47:21,410 | INFO     | sum of deviations: -12798870794.0
[2025-07-27 05:47:54] 2025-07-27 09:47:21,411 | INFO     | mean x: 1753605142.0
[2025-07-27 05:47:54] 2025-07-27 09:47:21,411 | INFO     | mean y: 2572351.707482993
[2025-07-27 05:47:54] 2025-07-27 09:47:21,411 | INFO     | -- intersect: 22789886269.01322
[2025-07-27 05:47:54] 2025-07-27 09:47:21,411 | INFO     | intersect: 22789886269.01322
[2025-07-27 05:47:54] 2025-07-27 09:47:21,411 | INFO     | chi2: 1.6309338216017466
[2025-07-27 05:47:54] 2025-07-27 09:47:21,412 | INFO     | sum of square deviations: 887813855.5
[2025-07-27 05:47:54] 2025-07-27 09:47:21,413 | INFO     | sum of deviations: -11546841645.999998
[2025-07-27 05:47:54] 2025-07-27 09:47:21,413 | INFO     | mean x: 1753604989.5
[2025-07-27 05:47:54] 2025-07-27 09:47:21,413 | INFO     | mean y: 2574318.436619718
[2025-07-27 05:47:54] 2025-07-27 09:47:21,413 | INFO     | -- intersect: 22809831715.86523
[2025-07-27 05:47:54] 2025-07-27 09:47:21,413 | INFO     | intersect: 22809831715.86523
[2025-07-27 05:47:54] 2025-07-27 09:47:21,413 | INFO     | chi2: 1.630894398633608
[2025-07-27 05:47:54] 2025-07-27 09:47:21,414 | INFO     | current chi2=1.630894398633608 (change=0.0024172021952379736 %)
[2025-07-27 05:47:54] 2025-07-27 09:47:21,414 | INFO     | right removable region: 141
[2025-07-27 05:47:54] 2025-07-27 09:47:21,414 | INFO     | sum of square deviations: 887813855.5
[2025-07-27 05:47:54] 2025-07-27 09:47:21,415 | INFO     | sum of deviations: -34936502977.0
[2025-07-27 05:47:54] 2025-07-27 09:47:21,415 | INFO     | mean x: 1753605294.5
[2025-07-27 05:47:54] 2025-07-27 09:47:21,415 | INFO     | mean y: 2606569.0422535213
[2025-07-27 05:47:54] 2025-07-27 09:47:21,415 | INFO     | -- intersect: 69009004939.8798
[2025-07-27 05:47:54] 2025-07-27 09:47:21,415 | INFO     | intersect: 69009004939.8798
[2025-07-27 05:47:54] 2025-07-27 09:47:21,415 | INFO     | chi2: 0.16811482086498128
[2025-07-27 05:47:54] 2025-07-27 09:47:21,415 | INFO     | current chi2=0.16811482086498128 (change=89.6921126634142 %)
[2025-07-27 05:47:54] 2025-07-27 09:47:21,416 | INFO     | sum of square deviations: 797291228.0
[2025-07-27 05:47:54] 2025-07-27 09:47:21,416 | INFO     | sum of deviations: -35162467777.99999
[2025-07-27 05:47:54] 2025-07-27 09:47:21,416 | INFO     | mean x: 1753605447.0
[2025-07-27 05:47:54] 2025-07-27 09:47:21,417 | INFO     | mean y: 2606857.99270073
[2025-07-27 05:47:54] 2025-07-27 09:47:21,417 | INFO     | -- intersect: 77340840191.04874
[2025-07-27 05:47:54] 2025-07-27 09:47:21,417 | INFO     | intersect: 77340840191.04874
[2025-07-27 05:47:54] 2025-07-27 09:47:21,417 | INFO     | chi2: 0.13259273589660123
[2025-07-27 05:47:54] 2025-07-27 09:47:21,417 | INFO     | current chi2=0.13259273589660123 (change=21.12965697230766 %)
[2025-07-27 05:47:54] 2025-07-27 09:47:21,417 | INFO     | left removable region: 20
[2025-07-27 05:47:54] 2025-07-27 09:47:21,417 | INFO     | sum of square deviations: 549294020.0
[2025-07-27 05:47:54] 2025-07-27 09:47:21,418 | INFO     | sum of deviations: -26493018457.999992
[2025-07-27 05:47:54] 2025-07-27 09:47:21,418 | INFO     | mean x: 1753605569.0
[2025-07-27 05:47:54] 2025-07-27 09:47:21,418 | INFO     | mean y: 2597709.52892562
[2025-07-27 05:47:54] 2025-07-27 09:47:21,418 | INFO     | -- intersect: 84580807222.11125
[2025-07-27 05:47:54] 2025-07-27 09:47:21,419 | INFO     | intersect: 84580807222.11125
[2025-07-27 05:47:54] 2025-07-27 09:47:21,419 | INFO     | chi2: 0.12392627380776497
[2025-07-27 05:47:54] 2025-07-27 09:47:21,419 | INFO     | -- intersect: 84580807222.11125
[2025-07-27 05:47:54] 2025-07-27 09:47:21,419 | INFO     | current memory leak: -48.23 B/s (using 121 data points, chi2=0.12)
[2025-07-27 05:47:54] 2025-07-27 09:47:21,419 | INFO     | could have reported an average CPU frequency of 2141 MHz (8 samples)
[2025-07-27 05:47:54] 2025-07-27 09:47:21,420 | INFO     | ..............................
[2025-07-27 05:47:54] 2025-07-27 09:47:21,420 | INFO     | . Timing measurements:
[2025-07-27 05:47:54] 2025-07-27 09:47:21,420 | INFO     | . get job = 0 s
[2025-07-27 05:47:54] 2025-07-27 09:47:21,420 | INFO     | . initial setup = 2 s
[2025-07-27 05:47:54] 2025-07-27 09:47:21,420 | INFO     | . payload setup = 11 s
[2025-07-27 05:47:54] 2025-07-27 09:47:21,420 | INFO     | . stage-in = 0 s
[2025-07-27 05:47:54] 2025-07-27 09:47:21,420 | INFO     | . payload execution = 8942 s
[2025-07-27 05:47:54] 2025-07-27 09:47:21,420 | INFO     | . stage-out = 0 s
[2025-07-27 05:47:54] 2025-07-27 09:47:21,420 | INFO     | . log creation = 0 s
[2025-07-27 05:47:54] 2025-07-27 09:47:21,421 | INFO     | ..............................
[2025-07-27 05:47:54] 2025-07-27 09:47:21,586 | INFO     | 
[2025-07-27 05:47:54] 2025-07-27 09:47:21,587 | INFO     | job summary report
[2025-07-27 05:47:54] 2025-07-27 09:47:21,587 | INFO     | --------------------------------------------------
[2025-07-27 05:47:54] 2025-07-27 09:47:21,587 | INFO     | PanDA job id: 6745955723
[2025-07-27 05:47:54] 2025-07-27 09:47:21,587 | INFO     | task id: 45759633
[2025-07-27 05:47:54] 2025-07-27 09:47:21,587 | INFO     | errors: (none)
[2025-07-27 05:47:54] 2025-07-27 09:47:21,587 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 05:47:54] 2025-07-27 09:47:21,588 | INFO     | pilot state: finished 
[2025-07-27 05:47:54] 2025-07-27 09:47:21,588 | INFO     | transexitcode: 0
[2025-07-27 05:47:54] 2025-07-27 09:47:21,588 | INFO     | exeerrorcode: 0
[2025-07-27 05:47:54] 2025-07-27 09:47:21,588 | INFO     | exeerrordiag: 
[2025-07-27 05:47:54] 2025-07-27 09:47:21,588 | INFO     | exitcode: 0
[2025-07-27 05:47:54] 2025-07-27 09:47:21,589 | INFO     | exitmsg: OK
[2025-07-27 05:47:54] 2025-07-27 09:47:21,589 | INFO     | cpuconsumptiontime: 67183 s
[2025-07-27 05:47:54] 2025-07-27 09:47:21,589 | INFO     | nevents: 400
[2025-07-27 05:47:54] 2025-07-27 09:47:21,589 | INFO     | neventsw: 0
[2025-07-27 05:47:54] 2025-07-27 09:47:21,589 | INFO     | pid: 11122
[2025-07-27 05:47:54] 2025-07-27 09:47:21,589 | INFO     | pgrp: 11122
[2025-07-27 05:47:54] 2025-07-27 09:47:21,590 | INFO     | corecount: 8
[2025-07-27 05:47:54] 2025-07-27 09:47:21,590 | INFO     | event service: False
[2025-07-27 05:47:54] 2025-07-27 09:47:21,590 | INFO     | sizes: {0: 2397257, 1: 2397512, 7: 2397774, 12: 2397802, 8957: 2425977, 8958: 2434975, 8961: 2435159, 8969: 2435353}
[2025-07-27 05:47:54] 2025-07-27 09:47:21,590 | INFO     | --------------------------------------------------
[2025-07-27 05:47:54] 2025-07-27 09:47:21,590 | INFO     | 
[2025-07-27 05:47:54] 2025-07-27 09:47:21,590 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 05:47:54] 2025-07-27 09:47:21,622 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 05:47:54] 2025-07-27 09:47:21,622 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 05:47:54] 2025-07-27 09:47:21,622 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 05:47:54] 2025-07-27 09:47:21,623 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 05:47:54] 2025-07-27 09:47:21,623 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 05:47:54] 2025-07-27 09:47:21,623 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 05:47:54] 2025-07-27 09:47:21,623 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 05:47:54] 2025-07-27 09:47:21,623 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 05:47:54] 2025-07-27 09:47:21,624 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 05:47:54] 2025-07-27 09:47:21,624 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 05:47:54] 2025-07-27 09:47:21,624 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 05:47:54] 2025-07-27 09:47:21,624 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 05:47:54] 2025-07-27 09:47:21,624 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 05:47:54] 2025-07-27 09:47:21,624 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 05:47:54] 2025-07-27 09:47:21,624 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 05:47:54] 2025-07-27 09:47:21,625 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 05:47:54] 2025-07-27 09:47:21,625 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 05:47:54] 2025-07-27 09:47:21,625 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 05:47:54] 2025-07-27 09:47:21,625 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 05:47:54] 2025-07-27 09:47:21,625 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 05:47:54] 2025-07-27 09:47:21,626 | INFO     | job 6745955723 has completed (purged errors)
[2025-07-27 05:47:54] 2025-07-27 09:47:21,626 | INFO     | overall cleanup function is called
[2025-07-27 05:47:54] 2025-07-27 09:47:21,794 | INFO     | PID=3572 has CPU usage=7.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-07-27 05:47:54] 2025-07-27 09:47:22,634 | INFO     | --- collectZombieJob: --- 10, [11122]
[2025-07-27 05:47:54] 2025-07-27 09:47:22,634 | INFO     | zombie collector waiting for pid 11122
[2025-07-27 05:47:54] 2025-07-27 09:47:22,634 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 05:47:54] 2025-07-27 09:47:22,635 | INFO     | collected zombie processes
[2025-07-27 05:47:54] 2025-07-27 09:47:22,635 | INFO     | will attempt to kill all subprocesses of pid=11122
[2025-07-27 05:47:54] 2025-07-27 09:47:22,717 | INFO     | process IDs to be killed: [11122] (in reverse order)
[2025-07-27 05:47:54] 2025-07-27 09:47:22,773 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 05:47:54] 2025-07-27 09:47:22,773 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 05:47:54] 2025-07-27 09:47:22,777 | INFO     | did not find any defunct processes belonging to 11122
[2025-07-27 05:47:54] 2025-07-27 09:47:22,780 | INFO     | did not find any defunct processes belonging to 11122
[2025-07-27 05:47:54] 2025-07-27 09:47:22,780 | INFO     | ready for new job
[2025-07-27 05:47:54] 2025-07-27 09:47:22,781 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 05:47:54] 2025-07-27 09:47:22,783 | INFO     | ***************************************
[2025-07-27 05:47:54] 2025-07-27 09:47:22,783 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 05:47:54] 2025-07-27 09:47:22,783 | INFO     | ***************************************
[2025-07-27 05:47:54] 2025-07-27 09:47:22,783 | INFO     | 
[2025-07-27 05:47:54] 2025-07-27 09:47:22,784 | INFO     | architecture information:
[2025-07-27 05:47:54] 2025-07-27 09:47:22,784 | INFO     | executing command: cat /etc/os-release
[2025-07-27 05:47:54] 2025-07-27 09:47:22,803 | INFO     | cat /etc/os-release:
[2025-07-27 05:47:54] NAME="CentOS Linux"
[2025-07-27 05:47:54] VERSION="7 (Core)"
[2025-07-27 05:47:54] ID="centos"
[2025-07-27 05:47:54] ID_LIKE="rhel fedora"
[2025-07-27 05:47:54] VERSION_ID="7"
[2025-07-27 05:47:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 05:47:54] ANSI_COLOR="0;31"
[2025-07-27 05:47:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 05:47:54] HOME_URL="https://www.centos.org/"
[2025-07-27 05:47:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 05:47:54] 
[2025-07-27 05:47:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 05:47:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 05:47:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 05:47:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 05:47:54] 
[2025-07-27 05:47:54] 2025-07-27 09:47:22,804 | INFO     | ***************************************
[2025-07-27 05:47:54] 2025-07-27 09:47:23,306 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 05:47:54] 2025-07-27 09:47:23,324 | INFO     | sufficient remaining disk space (18591252480 B)
[2025-07-27 05:47:54] 2025-07-27 09:47:23,325 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 05:47:54] 2025-07-27 09:47:23,325 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 05:47:54] 2025-07-27 09:47:23,325 | INFO     | update_server=False
[2025-07-27 05:47:54] 2025-07-27 09:47:23,326 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 05:47:54] 2025-07-27 09:47:23,326 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 05:47:54] 2025-07-27 09:47:23,350 | INFO     | all data control threads have been joined
[2025-07-27 05:47:54] 2025-07-27 09:47:23,412 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 05:47:54] 2025-07-27 09:47:23,412 | INFO     | aborting loop
[2025-07-27 05:47:54] 2025-07-27 09:47:23,550 | INFO     | all job control threads have been joined
[2025-07-27 05:47:54] 2025-07-27 09:47:23,846 | INFO     | all payload control threads have been joined
[2025-07-27 05:47:54] 2025-07-27 09:47:24,188 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 05:47:54] 2025-07-27 09:47:24,329 | INFO     | [job] queue monitor thread has finished
[2025-07-27 05:47:54] 2025-07-27 09:47:24,331 | INFO     | [job] retrieve thread has finished
[2025-07-27 05:47:54] 2025-07-27 09:47:24,356 | INFO     | [data] control thread has finished
[2025-07-27 05:47:54] 2025-07-27 09:47:24,417 | INFO     | [job] job monitor thread has finished
[2025-07-27 05:47:54] 2025-07-27 09:47:24,436 | INFO     | [data] copytool_in thread has finished
[2025-07-27 05:47:54] 2025-07-27 09:47:24,480 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 05:47:54] 2025-07-27 09:47:24,556 | INFO     | [job] control thread has finished
[2025-07-27 05:47:54] 2025-07-27 09:47:24,567 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 05:47:54] 2025-07-27 09:47:24,757 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 05:47:54] 2025-07-27 09:47:24,852 | INFO     | [payload] control thread has finished
[2025-07-27 05:47:54] 2025-07-27 09:47:25,054 | INFO     | [payload] failed_post thread has finished
[2025-07-27 05:47:54] 2025-07-27 09:47:25,320 | INFO     | [job] validate thread has finished
[2025-07-27 05:47:54] 2025-07-27 09:47:25,573 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 05:47:54] 2025-07-27 09:47:25,595 | INFO     | [payload] validate_post thread has finished
[2025-07-27 05:47:54] 2025-07-27 09:47:25,833 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 05:47:54] 2025-07-27 09:47:26,193 | INFO     | [data] copytool_out thread has finished
[2025-07-27 05:47:54] 2025-07-27 09:47:28,762 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 05:47:54] 2025-07-27 09:47:30,067 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139717764634432)>', '<ExcThread(monitor, started 139716359878400)>']
[2025-07-27 05:47:54] 2025-07-27 09:47:34,336 [wrapper] supervise_pilot (15 min periods counter: 11)
[2025-07-27 05:47:54] 2025-07-27 09:47:35,092 | INFO     | all workflow threads have been joined
[2025-07-27 05:47:54] 2025-07-27 09:47:35,092 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 05:47:54] 2025-07-27 09:47:35,093 | INFO     | traces error code: 0
[2025-07-27 05:47:54] 2025-07-27 09:47:35,093 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 05:47:54] 2025-07-27 09:47:53,990 | INFO     | PID=3572 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-07-27 05:47:54] 2025-07-27 09:47:53,990 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 05:47:54] 2025-07-27 09:47:53,991 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 05:47:54] 2025-07-27 09:47:53,991 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 05:47:54] 2025-07-27 09:47:53,991 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 05:47:54] 2025-07-27 09:47:53,991 | INFO     | [monitor] control thread has ended
[2025-07-27 05:47:54] 2025-07-27 09:47:54,088 [wrapper] ==== pilot stdout END ====
[2025-07-27 05:47:54] 2025-07-27 09:47:54,092 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 05:47:54] 2025-07-27 09:47:54,097 [wrapper] pilotpid: 3572
[2025-07-27 05:47:54] 2025-07-27 09:47:54,101 [wrapper] Pilot exit status: 0
[2025-07-27 05:47:54] 2025-07-27 09:47:54,119 [wrapper] pandaids: 6745955723
[2025-07-27 05:47:54] 2025-07-27 09:47:54,162 [wrapper] cleanup supervisor_pilot 12327 3573
[2025-07-27 05:47:54] 2025-07-27 09:47:54,166 [wrapper] Test setup, not cleaning
[2025-07-27 05:47:54] 2025-07-27 09:47:54,171 [wrapper] apfmon messages muted
[2025-07-27 05:47:54] 2025-07-27 09:47:54,176 [wrapper] ==== wrapper stdout END ====
[2025-07-27 05:47:54] 2025-07-27 09:47:54,181 [wrapper] ==== wrapper stderr END ====
[2025-07-27 05:47:54]  *** Error codes and diagnostics ***
[2025-07-27 05:47:54]     "exeErrorCode": 0,
[2025-07-27 05:47:54]     "exeErrorDiag": "",
[2025-07-27 05:47:54]     "pilotErrorCode": 0,
[2025-07-27 05:47:54]     "pilotErrorDiag": "",
[2025-07-27 05:47:54]  *** Listing of results directory ***
[2025-07-27 05:47:54] total 410352
[2025-07-27 05:47:54] -rw-r--r-- 1 boincer umatlas    530466 Jul 26 21:40 pilot3.tar.gz
[2025-07-27 05:47:54] -rw-r--r-- 1 boincer umatlas      5112 Jul 26 22:19 queuedata.json
[2025-07-27 05:47:54] -rwx------ 1 boincer umatlas     36292 Jul 26 22:20 runpilot2-wrapper.sh
[2025-07-27 05:47:54] -rw-r--r-- 1 boincer umatlas       100 Jul 27 03:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 05:47:54] -rwxr-xr-x 1 boincer umatlas      7986 Jul 27 03:17 run_atlas
[2025-07-27 05:47:54] -rw-r--r-- 1 boincer umatlas       105 Jul 27 03:17 job.xml
[2025-07-27 05:47:54] -rw-r--r-- 2 boincer umatlas 238512134 Jul 27 03:17 EVNT.45759628._000002.pool.root.1
[2025-07-27 05:47:54] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 03:17 start_atlas.sh
[2025-07-27 05:47:54] drwxrwx--x 2 boincer umatlas      4096 Jul 27 03:17 shared
[2025-07-27 05:47:54] -rw-r--r-- 2 boincer umatlas    542885 Jul 27 03:17 input.tar.gz
[2025-07-27 05:47:54] -rw-r--r-- 1 boincer umatlas         0 Jul 27 03:17 boinc_lockfile
[2025-07-27 05:47:54] -rw-r--r-- 1 boincer umatlas      2577 Jul 27 03:17 pandaJob.out
[2025-07-27 05:47:54] -rw------- 1 boincer umatlas    980125 Jul 27 03:17 agis_schedconf.cvmfs.json
[2025-07-27 05:47:54] -rw------- 1 boincer umatlas   1593052 Jul 27 03:17 agis_ddmendpoints.agis.ALL.json
[2025-07-27 05:47:54] drwx------ 4 boincer umatlas      4096 Jul 27 03:17 pilot3
[2025-07-27 05:47:54] -rw-r--r-- 1 boincer umatlas      5823 Jul 27 05:45 init_data.xml
[2025-07-27 05:47:54] -rw------- 1 boincer umatlas 175479497 Jul 27 05:46 HITS.45759633._000046.pool.root.1
[2025-07-27 05:47:54] -rw-r--r-- 1 boincer umatlas       530 Jul 27 05:46 boinc_task_state.xml
[2025-07-27 05:47:54] -rw------- 1 boincer umatlas      1062 Jul 27 05:47 memory_monitor_summary.json
[2025-07-27 05:47:54] -rw------- 1 boincer umatlas    355501 Jul 27 05:47 log.45759633._000046.job.log.tgz.1
[2025-07-27 05:47:54] -rw------- 1 boincer umatlas      7836 Jul 27 05:47 heartbeat.json
[2025-07-27 05:47:54] -rw-r--r-- 1 boincer umatlas      8192 Jul 27 05:47 boinc_mmap_file
[2025-07-27 05:47:54] -rw-r--r-- 1 boincer umatlas        27 Jul 27 05:47 wrapper_checkpoint.txt
[2025-07-27 05:47:54] -rw------- 1 boincer umatlas       744 Jul 27 05:47 pilotlog.txt
[2025-07-27 05:47:54] -rw------- 1 boincer umatlas        95 Jul 27 05:47 pilot_heartbeat.json
[2025-07-27 05:47:54] -rw------- 1 boincer umatlas    813731 Jul 27 05:47 log.45759633._000046.job.log.1
[2025-07-27 05:47:54] -rw------- 1 boincer umatlas       357 Jul 27 05:47 output.list
[2025-07-27 05:47:54] -rw-r--r-- 1 boincer umatlas       620 Jul 27 05:47 runtime_log
[2025-07-27 05:47:54] -rw------- 1 boincer umatlas   1187840 Jul 27 05:47 result.tar.gz
[2025-07-27 05:47:54] -rw-r--r-- 1 boincer umatlas      8655 Jul 27 05:47 runtime_log.err
[2025-07-27 05:47:54] -rw------- 1 boincer umatlas       659 Jul 27 05:47 2kMMDmyA6z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmquTLDm4bjl3m.diag
[2025-07-27 05:47:54] -rw-r--r-- 1 boincer umatlas     21224 Jul 27 05:47 stderr.txt
[2025-07-27 05:47:54] HITS file was successfully produced:
[2025-07-27 05:47:54] -rw------- 1 boincer umatlas 175479497 Jul 27 05:46 shared/HITS.pool.root.1
[2025-07-27 05:47:54]  *** Contents of shared directory: ***
[2025-07-27 05:47:54] total 406004
[2025-07-27 05:47:54] -rw-r--r-- 2 boincer umatlas 238512134 Jul 27 03:17 ATLAS.root_0
[2025-07-27 05:47:54] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 03:17 start_atlas.sh
[2025-07-27 05:47:54] -rw-r--r-- 2 boincer umatlas    542885 Jul 27 03:17 input.tar.gz
[2025-07-27 05:47:54] -rw------- 1 boincer umatlas 175479497 Jul 27 05:46 HITS.pool.root.1
[2025-07-27 05:47:54] -rw------- 1 boincer umatlas   1187840 Jul 27 05:47 result.tar.gz
05:47:55 (32262): run_atlas exited; CPU time 67122.077160
05:47:55 (32262): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN