Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
03:21:34 (13505): wrapper (7.7.26015): starting
03:21:34 (13505): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 03:21:34] Arguments: --nthreads 12
[2025-07-27 03:21:34] Threads: 12
[2025-07-27 03:21:34] Checking for CVMFS
[2025-07-27 03:21:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 03:21:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 03:21:35] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 03:21:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 03:21:35] 2.11.2.0 2979 111695 102380 148804 2 56 15750072 20275200 1 130560 0 37850492 99.971 9506059 10561 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 03:21:35] CVMFS is ok
[2025-07-27 03:21:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 03:21:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 03:21:35] Further information can be found at the LHC@home message board.
[2025-07-27 03:21:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 03:21:35] Checking for apptainer binary...
[2025-07-27 03:21:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 03:21:35] Running /usr/bin/apptainer --version
[2025-07-27 03:21:35] apptainer version 1.3.2-1.el7
[2025-07-27 03:21:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 03:21:36] c-205-7.aglt2.org
[2025-07-27 03:21:36] apptainer works
[2025-07-27 03:21:36] Set ATHENA_PROC_NUMBER=12
[2025-07-27 03:21:36] Set ATHENA_CORE_NUMBER=12
[2025-07-27 03:21:36] Starting ATLAS job with PandaID=6745950269
[2025-07-27 03:21:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 04:59:41]  *** The last 200 lines of the pilot log: ***
[2025-07-27 04:59:41]  replicas=None
[2025-07-27 04:59:41]  scope=mc23_13p6TeV
[2025-07-27 04:59:41]  status=None
[2025-07-27 04:59:41]  status_code=0
[2025-07-27 04:59:41]  storage_token=
[2025-07-27 04:59:41]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745950269/log.45759738._000040.job.log.tgz.1
[2025-07-27 04:59:41]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/de/64/log.45759738._000040.job.log.tgz.1
[2025-07-27 04:59:41]  workdir=None
[2025-07-27 04:59:41] ]
[2025-07-27 04:59:41] 2025-07-27 08:59:02,351 | INFO     | transferring file log.45759738._000040.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745950269/log.45759738._000040.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 04:59:41] 2025-07-27 08:59:02,351 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745950269/log.45759738._000040.job.log.tgz.1 /tmp/boinchome/slots/0/log.45759738._000040.job
[2025-07-27 04:59:41] 2025-07-27 08:59:02,373 | INFO     | adding to output.list: log.45759738._000040.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/de/64/log.45759738._000040.job.log.tg
[2025-07-27 04:59:41] 2025-07-27 08:59:02,374 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 04:59:41] 2025-07-27 08:59:02,374 | INFO     | summary of transferred files:
[2025-07-27 04:59:41] 2025-07-27 08:59:02,375 | INFO     |  -- lfn=log.45759738._000040.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 04:59:41] 2025-07-27 08:59:02,375 | INFO     | stage-out finished correctly
[2025-07-27 04:59:41] 2025-07-27 08:59:03,648 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 04:59:41] 2025-07-27 08:59:03,851 | WARNING  | process 23563 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 04:59:41] 2025-07-27 08:59:03,851 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745950269/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 04:59:41] 2025-07-27 08:59:03,936 | INFO     | number of running child processes to parent process 23563: 1
[2025-07-27 04:59:41] 2025-07-27 08:59:03,936 | INFO     | maximum number of monitored processes: 6
[2025-07-27 04:59:41] 2025-07-27 08:59:04,532 | INFO     | job 6745950269 has state=finished
[2025-07-27 04:59:41] 2025-07-27 08:59:04,532 | INFO     | preparing for final server update for job 6745950269 in state='finished'
[2025-07-27 04:59:41] 2025-07-27 08:59:04,533 | INFO     | this job has now completed (state=finished)
[2025-07-27 04:59:41] 2025-07-27 08:59:04,533 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 04:59:41] 2025-07-27 08:59:04,533 | INFO     | log transfer has been attempted: DONE
[2025-07-27 04:59:41] 2025-07-27 08:59:04,533 | INFO     | job 6745950269 has finished - writing final server update
[2025-07-27 04:59:41] 2025-07-27 08:59:04,534 | INFO     | total number of processed events: 400 (read)
[2025-07-27 04:59:41] 2025-07-27 08:59:04,535 | INFO     | executing command: lscpu
[2025-07-27 04:59:41] 2025-07-27 08:59:04,560 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 04:59:41] 2025-07-27 08:59:06,439 | INFO     | monitor loop #431: job 0:6745950269 is in state 'finished'
[2025-07-27 04:59:41] 2025-07-27 08:59:06,439 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 04:59:41] 2025-07-27 08:59:08,942 | INFO     | monitor loop #432: job 0:6745950269 is in state 'finished'
[2025-07-27 04:59:41] 2025-07-27 08:59:08,942 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 04:59:41] 2025-07-27 08:59:09,235 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-27 04:59:41] 2025-07-27 08:59:09,238 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.8333333333333
[2025-07-27 04:59:41] 2025-07-27 08:59:09,240 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745950269/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 04:59:41] 2025-07-27 08:59:09,240 | INFO     | extracted standard info from prmon json
[2025-07-27 04:59:41] 2025-07-27 08:59:09,240 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 04:59:41] 2025-07-27 08:59:09,240 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 04:59:41] 2025-07-27 08:59:09,241 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 04:59:41] 2025-07-27 08:59:09,241 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 04:59:41] 2025-07-27 08:59:09,243 | INFO     | fitting pss+swap vs Time
[2025-07-27 04:59:41] 2025-07-27 08:59:09,243 | INFO     | sum of square deviations: 218571540.0
[2025-07-27 04:59:41] 2025-07-27 08:59:09,243 | INFO     | sum of deviations: -11770242800.0
[2025-07-27 04:59:41] 2025-07-27 08:59:09,243 | INFO     | mean x: 1753603930.0
[2025-07-27 04:59:41] 2025-07-27 08:59:09,243 | INFO     | mean y: 2846689.0
[2025-07-27 04:59:41] 2025-07-27 08:59:09,244 | INFO     | -- intersect: 94435745094.41089
[2025-07-27 04:59:41] 2025-07-27 08:59:09,244 | INFO     | intersect: 94435745094.41089
[2025-07-27 04:59:41] 2025-07-27 08:59:09,244 | INFO     | chi2: 0.14871933073119323
[2025-07-27 04:59:41] 2025-07-27 08:59:09,244 | INFO     | -- intersect: 94435745094.41089
[2025-07-27 04:59:41] 2025-07-27 08:59:09,244 | INFO     | current memory leak: -53.85 B/s (using 89 data points, chi2=0.15)
[2025-07-27 04:59:41] 2025-07-27 08:59:09,244 | INFO     | could have reported an average CPU frequency of 2133 MHz (7 samples)
[2025-07-27 04:59:41] 2025-07-27 08:59:09,245 | INFO     | ..............................
[2025-07-27 04:59:41] 2025-07-27 08:59:09,245 | INFO     | . Timing measurements:
[2025-07-27 04:59:41] 2025-07-27 08:59:09,245 | INFO     | . get job = 0 s
[2025-07-27 04:59:41] 2025-07-27 08:59:09,245 | INFO     | . initial setup = 2 s
[2025-07-27 04:59:41] 2025-07-27 08:59:09,245 | INFO     | . payload setup = 9 s
[2025-07-27 04:59:41] 2025-07-27 08:59:09,245 | INFO     | . stage-in = 0 s
[2025-07-27 04:59:41] 2025-07-27 08:59:09,245 | INFO     | . payload execution = 5801 s
[2025-07-27 04:59:41] 2025-07-27 08:59:09,245 | INFO     | . stage-out = 0 s
[2025-07-27 04:59:41] 2025-07-27 08:59:09,245 | INFO     | . log creation = 0 s
[2025-07-27 04:59:41] 2025-07-27 08:59:09,246 | INFO     | ..............................
[2025-07-27 04:59:41] 2025-07-27 08:59:09,331 | INFO     | 
[2025-07-27 04:59:41] 2025-07-27 08:59:09,331 | INFO     | job summary report
[2025-07-27 04:59:41] 2025-07-27 08:59:09,331 | INFO     | --------------------------------------------------
[2025-07-27 04:59:41] 2025-07-27 08:59:09,331 | INFO     | PanDA job id: 6745950269
[2025-07-27 04:59:41] 2025-07-27 08:59:09,332 | INFO     | task id: 45759738
[2025-07-27 04:59:41] 2025-07-27 08:59:09,332 | INFO     | errors: (none)
[2025-07-27 04:59:41] 2025-07-27 08:59:09,332 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 04:59:41] 2025-07-27 08:59:09,332 | INFO     | pilot state: finished 
[2025-07-27 04:59:41] 2025-07-27 08:59:09,332 | INFO     | transexitcode: 0
[2025-07-27 04:59:41] 2025-07-27 08:59:09,333 | INFO     | exeerrorcode: 0
[2025-07-27 04:59:41] 2025-07-27 08:59:09,333 | INFO     | exeerrordiag: 
[2025-07-27 04:59:41] 2025-07-27 08:59:09,333 | INFO     | exitcode: 0
[2025-07-27 04:59:41] 2025-07-27 08:59:09,333 | INFO     | exitmsg: OK
[2025-07-27 04:59:41] 2025-07-27 08:59:09,333 | INFO     | cpuconsumptiontime: 62975 s
[2025-07-27 04:59:41] 2025-07-27 08:59:09,333 | INFO     | nevents: 400
[2025-07-27 04:59:41] 2025-07-27 08:59:09,333 | INFO     | neventsw: 0
[2025-07-27 04:59:41] 2025-07-27 08:59:09,334 | INFO     | pid: 23563
[2025-07-27 04:59:41] 2025-07-27 08:59:09,334 | INFO     | pgrp: 23563
[2025-07-27 04:59:41] 2025-07-27 08:59:09,334 | INFO     | corecount: 12
[2025-07-27 04:59:41] 2025-07-27 08:59:09,334 | INFO     | event service: False
[2025-07-27 04:59:41] 2025-07-27 08:59:09,334 | INFO     | sizes: {0: 2397234, 1: 2397489, 6: 2397751, 12: 2397779, 5814: 2424449, 5817: 2433447, 5818: 2433631, 5823: 2433825}
[2025-07-27 04:59:41] 2025-07-27 08:59:09,334 | INFO     | --------------------------------------------------
[2025-07-27 04:59:41] 2025-07-27 08:59:09,335 | INFO     | 
[2025-07-27 04:59:41] 2025-07-27 08:59:09,335 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 04:59:41] 2025-07-27 08:59:09,359 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 04:59:41] 2025-07-27 08:59:09,359 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 04:59:41] 2025-07-27 08:59:09,359 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 04:59:41] 2025-07-27 08:59:09,359 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 04:59:41] 2025-07-27 08:59:09,360 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 04:59:41] 2025-07-27 08:59:09,360 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 04:59:41] 2025-07-27 08:59:09,360 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 04:59:41] 2025-07-27 08:59:09,360 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 04:59:41] 2025-07-27 08:59:09,360 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 04:59:41] 2025-07-27 08:59:09,360 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 04:59:41] 2025-07-27 08:59:09,361 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 04:59:41] 2025-07-27 08:59:09,361 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 04:59:41] 2025-07-27 08:59:09,361 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 04:59:41] 2025-07-27 08:59:09,361 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 04:59:41] 2025-07-27 08:59:09,361 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 04:59:41] 2025-07-27 08:59:09,361 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 04:59:41] 2025-07-27 08:59:09,362 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 04:59:41] 2025-07-27 08:59:09,362 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 04:59:41] 2025-07-27 08:59:09,362 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 04:59:41] 2025-07-27 08:59:09,362 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 04:59:41] 2025-07-27 08:59:09,362 | INFO     | job 6745950269 has completed (purged errors)
[2025-07-27 04:59:41] 2025-07-27 08:59:09,363 | INFO     | overall cleanup function is called
[2025-07-27 04:59:41] 2025-07-27 08:59:10,371 | INFO     | --- collectZombieJob: --- 10, [23563]
[2025-07-27 04:59:41] 2025-07-27 08:59:10,371 | INFO     | zombie collector waiting for pid 23563
[2025-07-27 04:59:41] 2025-07-27 08:59:10,371 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 04:59:41] 2025-07-27 08:59:10,372 | INFO     | collected zombie processes
[2025-07-27 04:59:41] 2025-07-27 08:59:10,372 | INFO     | will attempt to kill all subprocesses of pid=23563
[2025-07-27 04:59:41] 2025-07-27 08:59:10,461 | INFO     | process IDs to be killed: [23563] (in reverse order)
[2025-07-27 04:59:41] 2025-07-27 08:59:10,513 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 04:59:41] 2025-07-27 08:59:10,514 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 04:59:41] 2025-07-27 08:59:10,517 | INFO     | did not find any defunct processes belonging to 23563
[2025-07-27 04:59:41] 2025-07-27 08:59:10,520 | INFO     | did not find any defunct processes belonging to 23563
[2025-07-27 04:59:41] 2025-07-27 08:59:10,520 | INFO     | ready for new job
[2025-07-27 04:59:41] 2025-07-27 08:59:10,520 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 04:59:41] 2025-07-27 08:59:10,521 | INFO     | ***************************************
[2025-07-27 04:59:41] 2025-07-27 08:59:10,521 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 04:59:41] 2025-07-27 08:59:10,521 | INFO     | ***************************************
[2025-07-27 04:59:41] 2025-07-27 08:59:10,521 | INFO     | 
[2025-07-27 04:59:41] 2025-07-27 08:59:10,522 | INFO     | architecture information:
[2025-07-27 04:59:41] 2025-07-27 08:59:10,522 | INFO     | executing command: cat /etc/os-release
[2025-07-27 04:59:41] 2025-07-27 08:59:10,537 | INFO     | cat /etc/os-release:
[2025-07-27 04:59:41] NAME="CentOS Linux"
[2025-07-27 04:59:41] VERSION="7 (Core)"
[2025-07-27 04:59:41] ID="centos"
[2025-07-27 04:59:41] ID_LIKE="rhel fedora"
[2025-07-27 04:59:41] VERSION_ID="7"
[2025-07-27 04:59:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 04:59:41] ANSI_COLOR="0;31"
[2025-07-27 04:59:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 04:59:41] HOME_URL="https://www.centos.org/"
[2025-07-27 04:59:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 04:59:41] 
[2025-07-27 04:59:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 04:59:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 04:59:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 04:59:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 04:59:41] 
[2025-07-27 04:59:41] 2025-07-27 08:59:10,537 | INFO     | ***************************************
[2025-07-27 04:59:41] 2025-07-27 08:59:11,040 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 04:59:41] 2025-07-27 08:59:11,057 | INFO     | sufficient remaining disk space (29358030848 B)
[2025-07-27 04:59:41] 2025-07-27 08:59:11,058 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 04:59:41] 2025-07-27 08:59:11,058 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 04:59:41] 2025-07-27 08:59:11,058 | INFO     | update_server=False
[2025-07-27 04:59:41] 2025-07-27 08:59:11,058 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 04:59:41] 2025-07-27 08:59:11,059 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 04:59:41] 2025-07-27 08:59:11,059 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 04:59:41] 2025-07-27 08:59:11,294 | INFO     | all payload control threads have been joined
[2025-07-27 04:59:41] 2025-07-27 08:59:11,446 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-27 04:59:41] 2025-07-27 08:59:11,446 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-27 04:59:41] 2025-07-27 08:59:11,446 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 04:59:41] 2025-07-27 08:59:11,446 | INFO     | will abort loop
[2025-07-27 04:59:41] 2025-07-27 08:59:11,844 | INFO     | all data control threads have been joined
[2025-07-27 04:59:41] 2025-07-27 08:59:11,903 | INFO     | all job control threads have been joined
[2025-07-27 04:59:41] 2025-07-27 08:59:12,064 | INFO     | [job] retrieve thread has finished
[2025-07-27 04:59:41] 2025-07-27 08:59:12,064 | INFO     | [job] queue monitor thread has finished
[2025-07-27 04:59:41] 2025-07-27 08:59:12,297 | INFO     | [payload] control thread has finished
[2025-07-27 04:59:41] 2025-07-27 08:59:12,452 | INFO     | [job] job monitor thread has finished
[2025-07-27 04:59:41] 2025-07-27 08:59:12,568 | INFO     | [payload] validate_post thread has finished
[2025-07-27 04:59:41] 2025-07-27 08:59:12,849 | INFO     | [data] control thread has finished
[2025-07-27 04:59:41] 2025-07-27 08:59:12,901 | INFO     | [job] validate thread has finished
[2025-07-27 04:59:41] 2025-07-27 08:59:12,908 | INFO     | [job] control thread has finished
[2025-07-27 04:59:41] 2025-07-27 08:59:13,020 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 04:59:41] 2025-07-27 08:59:13,065 | INFO     | [data] copytool_out thread has finished
[2025-07-27 04:59:41] 2025-07-27 08:59:13,156 | INFO     | [payload] failed_post thread has finished
[2025-07-27 04:59:41] 2025-07-27 08:59:13,284 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 04:59:41] 2025-07-27 08:59:13,329 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 04:59:41] 2025-07-27 08:59:13,441 | INFO     | [data] copytool_in thread has finished
[2025-07-27 04:59:41] 2025-07-27 08:59:14,236 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 04:59:41] 2025-07-27 08:59:18,242 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 04:59:41] 2025-07-27 08:59:21,896 | INFO     | job.realtimelogging is not enabled
[2025-07-27 04:59:41] 2025-07-27 08:59:22,901 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 04:59:41] 2025-07-27 08:59:23,934 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140178847663936)>', '<ExcThread(monitor, started 140177666209536)>']
[2025-07-27 04:59:41] 2025-07-27 08:59:28,960 | INFO     | all workflow threads have been joined
[2025-07-27 04:59:41] 2025-07-27 08:59:28,974 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 04:59:41] 2025-07-27 08:59:28,975 | INFO     | traces error code: 0
[2025-07-27 04:59:41] 2025-07-27 08:59:28,975 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 04:59:41] 2025-07-27 08:59:40,496 | INFO     | 5842s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-07-27 04:59:41] 2025-07-27 08:59:41,610 | INFO     | PID=17110 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-27 04:59:41] 2025-07-27 08:59:41,610 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 04:59:41] 2025-07-27 08:59:41,610 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 04:59:41] 2025-07-27 08:59:41,610 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 04:59:41] 2025-07-27 08:59:41,610 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 04:59:41] 2025-07-27 08:59:41,611 | INFO     | [monitor] control thread has ended
[2025-07-27 04:59:41] 2025-07-27 08:59:41,696 [wrapper] ==== pilot stdout END ====
[2025-07-27 04:59:41] 2025-07-27 08:59:41,700 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 04:59:41] 2025-07-27 08:59:41,704 [wrapper] pilotpid: 17110
[2025-07-27 04:59:41] 2025-07-27 08:59:41,708 [wrapper] Pilot exit status: 0
[2025-07-27 04:59:41] 2025-07-27 08:59:41,724 [wrapper] pandaids: 6745950269
[2025-07-27 04:59:41] 2025-07-27 08:59:41,767 [wrapper] cleanup supervisor_pilot 17031 17111
[2025-07-27 04:59:41] 2025-07-27 08:59:41,771 [wrapper] Test setup, not cleaning
[2025-07-27 04:59:41] 2025-07-27 08:59:41,775 [wrapper] apfmon messages muted
[2025-07-27 04:59:41] 2025-07-27 08:59:41,778 [wrapper] ==== wrapper stdout END ====
[2025-07-27 04:59:41] 2025-07-27 08:59:41,782 [wrapper] ==== wrapper stderr END ====
[2025-07-27 04:59:41]  *** Error codes and diagnostics ***
[2025-07-27 04:59:41]     "exeErrorCode": 0,
[2025-07-27 04:59:41]     "exeErrorDiag": "",
[2025-07-27 04:59:41]     "pilotErrorCode": 0,
[2025-07-27 04:59:41]     "pilotErrorDiag": "",
[2025-07-27 04:59:41]  *** Listing of results directory ***
[2025-07-27 04:59:41] total 413700
[2025-07-27 04:59:41] -rw-r--r-- 1 boincer umatlas    530466 Jul 26 21:40 pilot3.tar.gz
[2025-07-27 04:59:41] -rw-r--r-- 1 boincer umatlas      5112 Jul 26 22:14 queuedata.json
[2025-07-27 04:59:41] -rwx------ 1 boincer umatlas     36292 Jul 26 22:15 runpilot2-wrapper.sh
[2025-07-27 04:59:41] -rw-r--r-- 1 boincer umatlas       100 Jul 27 03:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 04:59:41] -rwxr-xr-x 1 boincer umatlas      7986 Jul 27 03:21 run_atlas
[2025-07-27 04:59:41] -rw-r--r-- 1 boincer umatlas       105 Jul 27 03:21 job.xml
[2025-07-27 04:59:41] -rw-r--r-- 2 boincer umatlas 241550743 Jul 27 03:21 EVNT.45759733._000002.pool.root.1
[2025-07-27 04:59:41] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 03:21 start_atlas.sh
[2025-07-27 04:59:41] drwxrwx--x 2 boincer umatlas      4096 Jul 27 03:21 shared
[2025-07-27 04:59:41] -rw-r--r-- 2 boincer umatlas    542880 Jul 27 03:21 input.tar.gz
[2025-07-27 04:59:41] -rw-r--r-- 1 boincer umatlas         0 Jul 27 03:21 boinc_lockfile
[2025-07-27 04:59:41] -rw-r--r-- 1 boincer umatlas      2554 Jul 27 03:21 pandaJob.out
[2025-07-27 04:59:41] -rw------- 1 boincer umatlas    980125 Jul 27 03:21 agis_schedconf.cvmfs.json
[2025-07-27 04:59:41] -rw------- 1 boincer umatlas   1593052 Jul 27 03:21 agis_ddmendpoints.agis.ALL.json
[2025-07-27 04:59:41] drwx------ 4 boincer umatlas      4096 Jul 27 03:21 pilot3
[2025-07-27 04:59:41] -rw-r--r-- 1 boincer umatlas      5867 Jul 27 04:54 init_data.xml
[2025-07-27 04:59:41] -rw------- 1 boincer umatlas 176355207 Jul 27 04:58 HITS.45759738._000040.pool.root.1
[2025-07-27 04:59:41] -rw------- 1 boincer umatlas      1047 Jul 27 04:58 memory_monitor_summary.json
[2025-07-27 04:59:41] -rw------- 1 boincer umatlas    377900 Jul 27 04:59 log.45759738._000040.job.log.tgz.1
[2025-07-27 04:59:41] -rw-r--r-- 1 boincer umatlas       529 Jul 27 04:59 boinc_task_state.xml
[2025-07-27 04:59:41] -rw------- 1 boincer umatlas        95 Jul 27 04:59 pilot_heartbeat.json
[2025-07-27 04:59:41] -rw------- 1 boincer umatlas      7841 Jul 27 04:59 heartbeat.json
[2025-07-27 04:59:41] -rw-r--r-- 1 boincer umatlas      8192 Jul 27 04:59 boinc_mmap_file
[2025-07-27 04:59:41] -rw-r--r-- 1 boincer umatlas        27 Jul 27 04:59 wrapper_checkpoint.txt
[2025-07-27 04:59:41] -rw------- 1 boincer umatlas       860 Jul 27 04:59 pilotlog.txt
[2025-07-27 04:59:41] -rw------- 1 boincer umatlas    545249 Jul 27 04:59 log.45759738._000040.job.log.1
[2025-07-27 04:59:41] -rw------- 1 boincer umatlas       357 Jul 27 04:59 output.list
[2025-07-27 04:59:41] -rw-r--r-- 1 boincer umatlas       620 Jul 27 04:59 runtime_log
[2025-07-27 04:59:41] -rw------- 1 boincer umatlas    942080 Jul 27 04:59 result.tar.gz
[2025-07-27 04:59:41] -rw-r--r-- 1 boincer umatlas      8657 Jul 27 04:59 runtime_log.err
[2025-07-27 04:59:41] -rw------- 1 boincer umatlas       658 Jul 27 04:59 jWAODm155z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmztTLDmCZfvDo.diag
[2025-07-27 04:59:41] -rw-r--r-- 1 boincer umatlas     21869 Jul 27 04:59 stderr.txt
[2025-07-27 04:59:41] HITS file was successfully produced:
[2025-07-27 04:59:41] -rw------- 1 boincer umatlas 176355207 Jul 27 04:58 shared/HITS.pool.root.1
[2025-07-27 04:59:41]  *** Contents of shared directory: ***
[2025-07-27 04:59:41] total 409588
[2025-07-27 04:59:41] -rw-r--r-- 2 boincer umatlas 241550743 Jul 27 03:21 ATLAS.root_0
[2025-07-27 04:59:41] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 03:21 start_atlas.sh
[2025-07-27 04:59:41] -rw-r--r-- 2 boincer umatlas    542880 Jul 27 03:21 input.tar.gz
[2025-07-27 04:59:41] -rw------- 1 boincer umatlas 176355207 Jul 27 04:58 HITS.pool.root.1
[2025-07-27 04:59:41] -rw------- 1 boincer umatlas    942080 Jul 27 04:59 result.tar.gz
04:59:43 (13505): run_atlas exited; CPU time 62950.210304
04:59:43 (13505): called boinc_finish(0)

</stderr_txt>
]]>

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