Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
03:11:38 (255076): wrapper (7.7.26015): starting
03:11:38 (255076): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 03:11:38] Arguments: --nthreads 8
[2025-07-27 03:11:38] Threads: 8
[2025-07-27 03:11:38] Checking for CVMFS
[2025-07-27 03:11:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 03:11:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 03:11:38] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 03:11:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 03:11:38] 2.13.1.0 3153527 8055 138240 148803 1 188 22308934 40960000 11872 16776704 0 109325567 99.999 287680 59047 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 03:11:38] CVMFS is ok
[2025-07-27 03:11:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 03:11:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 03:11:38] Further information can be found at the LHC@home message board.
[2025-07-27 03:11:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 03:11:38] Checking for apptainer binary...
[2025-07-27 03:11:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 03:11:38] Running /usr/bin/apptainer --version
[2025-07-27 03:11:38] apptainer version 1.4.1-1.el9
[2025-07-27 03:11:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 03:11:38] c-208-37.aglt2.org
[2025-07-27 03:11:38] apptainer works
[2025-07-27 03:11:38] Set ATHENA_PROC_NUMBER=8
[2025-07-27 03:11:38] Set ATHENA_CORE_NUMBER=8
[2025-07-27 03:11:38] Starting ATLAS job with PandaID=6745950272
[2025-07-27 03:11:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 04:13:43]  *** The last 200 lines of the pilot log: ***
[2025-07-27 04:13:43]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/aa/cf/log.45759738._000043.job.log.tgz.1
[2025-07-27 04:13:43]  workdir=None
[2025-07-27 04:13:43] ]
[2025-07-27 04:13:43] 2025-07-27 08:13:00,914 | INFO     | transferring file log.45759738._000043.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6745950272/log.45759738._000043.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 04:13:43] 2025-07-27 08:13:00,914 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6745950272/log.45759738._000043.job.log.tgz.1 /tmp/boinchome/slots/1/log.45759738._000043.job
[2025-07-27 04:13:43] 2025-07-27 08:13:00,932 | INFO     | adding to output.list: log.45759738._000043.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/aa/cf/log.45759738._000043.job.log.tg
[2025-07-27 04:13:43] 2025-07-27 08:13:00,932 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 04:13:43] 2025-07-27 08:13:00,933 | INFO     | summary of transferred files:
[2025-07-27 04:13:43] 2025-07-27 08:13:00,933 | INFO     |  -- lfn=log.45759738._000043.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 04:13:43] 2025-07-27 08:13:00,933 | INFO     | stage-out finished correctly
[2025-07-27 04:13:43] 2025-07-27 08:13:04,327 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 04:13:43] 2025-07-27 08:13:07,001 | INFO     | job 6745950272 has state=finished
[2025-07-27 04:13:43] 2025-07-27 08:13:07,001 | INFO     | preparing for final server update for job 6745950272 in state='finished'
[2025-07-27 04:13:43] 2025-07-27 08:13:07,002 | INFO     | this job has now completed (state=finished)
[2025-07-27 04:13:43] 2025-07-27 08:13:07,002 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 04:13:43] 2025-07-27 08:13:07,002 | INFO     | log transfer has been attempted: DONE
[2025-07-27 04:13:43] 2025-07-27 08:13:07,002 | INFO     | job 6745950272 has finished - writing final server update
[2025-07-27 04:13:43] 2025-07-27 08:13:07,002 | INFO     | total number of processed events: 400 (read)
[2025-07-27 04:13:43] 2025-07-27 08:13:07,003 | INFO     | executing command: lscpu
[2025-07-27 04:13:43] 2025-07-27 08:13:07,057 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 04:13:43] 2025-07-27 08:13:07,356 | WARNING  | process 265150 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 04:13:43] 2025-07-27 08:13:07,357 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6745950272/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 04:13:43] 2025-07-27 08:13:07,357 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6745950272/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 04:13:43] 2025-07-27 08:13:07,358 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3497212 B
[2025-07-27 04:13:43] 2025-07-27 08:13:07,358 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15998 B
[2025-07-27 04:13:43] 2025-07-27 08:13:07,358 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-07-27 04:13:43] 2025-07-27 08:13:10,376 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 04:13:43] 2025-07-27 08:13:10,385 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3722.8498046875006
[2025-07-27 04:13:43] 2025-07-27 08:13:10,391 | INFO     | sufficient remaining disk space (164735483904 B)
[2025-07-27 04:13:43] 2025-07-27 08:13:10,392 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-07-27 04:13:43] 2025-07-27 08:13:10,394 | INFO     | size of work directory /tmp/boinchome/slots/1/PanDA_Pilot-6745950272: 3789224 B (within 2537553920 B limit)
[2025-07-27 04:13:43] 2025-07-27 08:13:10,394 | INFO     | pfn file=/tmp/boinchome/slots/1/PanDA_Pilot-6745950272/HITS.45759738._000043.pool.root.1 does not exist (skip from workdir size calculation)
[2025-07-27 04:13:43] 2025-07-27 08:13:10,394 | INFO     | total size of present files: 0 B (workdir size: 3789224 B)
[2025-07-27 04:13:43] 2025-07-27 08:13:10,395 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/1/PanDA_Pilot-6745950272/HITS.45759738._000043.pool.root.1 since it does not exist
[2025-07-27 04:13:43] 2025-07-27 08:13:10,402 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6745950272/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 04:13:43] 2025-07-27 08:13:10,403 | INFO     | extracted standard info from prmon json
[2025-07-27 04:13:43] 2025-07-27 08:13:10,403 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 04:13:43] 2025-07-27 08:13:10,403 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 04:13:43] 2025-07-27 08:13:10,403 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 04:13:43] 2025-07-27 08:13:10,403 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 04:13:43] 2025-07-27 08:13:10,404 | INFO     | fitting pss+swap vs Time
[2025-07-27 04:13:43] 2025-07-27 08:13:10,404 | INFO     | sum of square deviations: 46147842.0
[2025-07-27 04:13:43] 2025-07-27 08:13:10,405 | INFO     | sum of deviations: 503259088.9999998
[2025-07-27 04:13:43] 2025-07-27 08:13:10,405 | INFO     | mean x: 1753602222.0
[2025-07-27 04:13:43] 2025-07-27 08:13:10,405 | INFO     | mean y: 2514631.4905660376
[2025-07-27 04:13:43] 2025-07-27 08:13:10,405 | INFO     | -- intersect: -19121158729.272335
[2025-07-27 04:13:43] 2025-07-27 08:13:10,405 | INFO     | intersect: -19121158729.272335
[2025-07-27 04:13:43] 2025-07-27 08:13:10,405 | INFO     | chi2: 0.00020148936920062085
[2025-07-27 04:13:43] 2025-07-27 08:13:10,405 | INFO     | -- intersect: -19121158729.272335
[2025-07-27 04:13:43] 2025-07-27 08:13:10,405 | INFO     | current memory leak: 10.91 B/s (using 53 data points, chi2=0.00)
[2025-07-27 04:13:43] 2025-07-27 08:13:10,406 | INFO     | could have reported an average CPU frequency of 3729 MHz (6 samples)
[2025-07-27 04:13:43] 2025-07-27 08:13:10,406 | INFO     | ..............................
[2025-07-27 04:13:43] 2025-07-27 08:13:10,406 | INFO     | . Timing measurements:
[2025-07-27 04:13:43] 2025-07-27 08:13:10,406 | INFO     | . get job = 0 s
[2025-07-27 04:13:43] 2025-07-27 08:13:10,406 | INFO     | . initial setup = 2 s
[2025-07-27 04:13:43] 2025-07-27 08:13:10,406 | INFO     | . payload setup = 5 s
[2025-07-27 04:13:43] 2025-07-27 08:13:10,406 | INFO     | . stage-in = 0 s
[2025-07-27 04:13:43] 2025-07-27 08:13:10,406 | INFO     | . payload execution = 3649 s
[2025-07-27 04:13:43] 2025-07-27 08:13:10,406 | INFO     | . stage-out = 0 s
[2025-07-27 04:13:43] 2025-07-27 08:13:10,406 | INFO     | . log creation = 0 s
[2025-07-27 04:13:43] 2025-07-27 08:13:10,406 | INFO     | ..............................
[2025-07-27 04:13:43] 2025-07-27 08:13:10,464 | INFO     | 
[2025-07-27 04:13:43] 2025-07-27 08:13:10,464 | INFO     | job summary report
[2025-07-27 04:13:43] 2025-07-27 08:13:10,464 | INFO     | --------------------------------------------------
[2025-07-27 04:13:43] 2025-07-27 08:13:10,464 | INFO     | PanDA job id: 6745950272
[2025-07-27 04:13:43] 2025-07-27 08:13:10,464 | INFO     | task id: 45759738
[2025-07-27 04:13:43] 2025-07-27 08:13:10,464 | INFO     | errors: (none)
[2025-07-27 04:13:43] 2025-07-27 08:13:10,464 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 04:13:43] 2025-07-27 08:13:10,464 | INFO     | pilot state: finished 
[2025-07-27 04:13:43] 2025-07-27 08:13:10,464 | INFO     | transexitcode: 0
[2025-07-27 04:13:43] 2025-07-27 08:13:10,464 | INFO     | exeerrorcode: 0
[2025-07-27 04:13:43] 2025-07-27 08:13:10,464 | INFO     | exeerrordiag: 
[2025-07-27 04:13:43] 2025-07-27 08:13:10,465 | INFO     | exitcode: 0
[2025-07-27 04:13:43] 2025-07-27 08:13:10,465 | INFO     | exitmsg: OK
[2025-07-27 04:13:43] 2025-07-27 08:13:10,465 | INFO     | cpuconsumptiontime: 27516 s
[2025-07-27 04:13:43] 2025-07-27 08:13:10,465 | INFO     | nevents: 400
[2025-07-27 04:13:43] 2025-07-27 08:13:10,465 | INFO     | neventsw: 0
[2025-07-27 04:13:43] 2025-07-27 08:13:10,465 | INFO     | pid: 265150
[2025-07-27 04:13:43] 2025-07-27 08:13:10,465 | INFO     | pgrp: 265150
[2025-07-27 04:13:43] 2025-07-27 08:13:10,465 | INFO     | corecount: 8
[2025-07-27 04:13:43] 2025-07-27 08:13:10,465 | INFO     | event service: False
[2025-07-27 04:13:43] 2025-07-27 08:13:10,465 | INFO     | sizes: {0: 2397461, 3: 2397723, 11: 2397751, 3658: 2423564, 3659: 2432617, 3662: 2432617, 3669: 2432967}
[2025-07-27 04:13:43] 2025-07-27 08:13:10,465 | INFO     | --------------------------------------------------
[2025-07-27 04:13:43] 2025-07-27 08:13:10,465 | INFO     | 
[2025-07-27 04:13:43] 2025-07-27 08:13:10,465 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-07-27 04:13:43] 2025-07-27 08:13:10,484 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 04:13:43] 2025-07-27 08:13:10,485 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 04:13:43] 2025-07-27 08:13:10,485 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 04:13:43] 2025-07-27 08:13:10,485 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 04:13:43] 2025-07-27 08:13:10,485 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 04:13:43] 2025-07-27 08:13:10,485 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 04:13:43] 2025-07-27 08:13:10,485 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 04:13:43] 2025-07-27 08:13:10,485 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 04:13:43] 2025-07-27 08:13:10,485 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 04:13:43] 2025-07-27 08:13:10,485 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 04:13:43] 2025-07-27 08:13:10,485 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 04:13:43] 2025-07-27 08:13:10,485 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 04:13:43] 2025-07-27 08:13:10,485 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 04:13:43] 2025-07-27 08:13:10,486 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 04:13:43] 2025-07-27 08:13:10,486 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 04:13:43] 2025-07-27 08:13:10,486 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 04:13:43] 2025-07-27 08:13:10,486 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 04:13:43] 2025-07-27 08:13:10,486 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 04:13:43] 2025-07-27 08:13:10,486 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 04:13:43] 2025-07-27 08:13:10,486 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 04:13:43] 2025-07-27 08:13:10,486 | INFO     | job 6745950272 has completed (purged errors)
[2025-07-27 04:13:43] 2025-07-27 08:13:10,486 | INFO     | overall cleanup function is called
[2025-07-27 04:13:43] 2025-07-27 08:13:10,811 | INFO     | number of running child processes to parent process 265150: 1
[2025-07-27 04:13:43] 2025-07-27 08:13:10,811 | INFO     | maximum number of monitored processes: 6
[2025-07-27 04:13:43] 2025-07-27 08:13:10,811 | INFO     | aborting job monitoring since job object (job id=6745950272) has expired
[2025-07-27 04:13:43] 2025-07-27 08:13:11,495 | INFO     | --- collectZombieJob: --- 10, [265150]
[2025-07-27 04:13:43] 2025-07-27 08:13:11,495 | INFO     | zombie collector waiting for pid 265150
[2025-07-27 04:13:43] 2025-07-27 08:13:11,495 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 04:13:43] 2025-07-27 08:13:11,495 | INFO     | collected zombie processes
[2025-07-27 04:13:43] 2025-07-27 08:13:11,495 | INFO     | will attempt to kill all subprocesses of pid=265150
[2025-07-27 04:13:43] 2025-07-27 08:13:11,831 | INFO     | process IDs to be killed: [265150] (in reverse order)
[2025-07-27 04:13:43] 2025-07-27 08:13:11,949 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 04:13:43] 2025-07-27 08:13:11,949 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 04:13:43] 2025-07-27 08:13:11,966 | INFO     | did not find any defunct processes belonging to 265150
[2025-07-27 04:13:43] 2025-07-27 08:13:11,978 | INFO     | did not find any defunct processes belonging to 265150
[2025-07-27 04:13:43] 2025-07-27 08:13:11,979 | INFO     | ready for new job
[2025-07-27 04:13:43] 2025-07-27 08:13:11,979 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 04:13:43] 2025-07-27 08:13:11,980 | INFO     | ***************************************
[2025-07-27 04:13:43] 2025-07-27 08:13:11,980 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 04:13:43] 2025-07-27 08:13:11,980 | INFO     | ***************************************
[2025-07-27 04:13:43] 2025-07-27 08:13:11,980 | INFO     | 
[2025-07-27 04:13:43] 2025-07-27 08:13:11,984 | INFO     | architecture information:
[2025-07-27 04:13:43] 2025-07-27 08:13:11,984 | INFO     | executing command: cat /etc/os-release
[2025-07-27 04:13:43] 2025-07-27 08:13:11,996 | INFO     | cat /etc/os-release:
[2025-07-27 04:13:43] NAME="CentOS Linux"
[2025-07-27 04:13:43] VERSION="7 (Core)"
[2025-07-27 04:13:43] ID="centos"
[2025-07-27 04:13:43] ID_LIKE="rhel fedora"
[2025-07-27 04:13:43] VERSION_ID="7"
[2025-07-27 04:13:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 04:13:43] ANSI_COLOR="0;31"
[2025-07-27 04:13:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 04:13:43] HOME_URL="https://www.centos.org/"
[2025-07-27 04:13:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 04:13:43] 
[2025-07-27 04:13:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 04:13:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 04:13:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 04:13:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 04:13:43] 
[2025-07-27 04:13:43] 2025-07-27 08:13:11,996 | INFO     | ***************************************
[2025-07-27 04:13:43] 2025-07-27 08:13:12,500 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-07-27 04:13:43] 2025-07-27 08:13:12,514 | INFO     | sufficient remaining disk space (164738629632 B)
[2025-07-27 04:13:43] 2025-07-27 08:13:12,514 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 04:13:43] 2025-07-27 08:13:12,515 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 04:13:43] 2025-07-27 08:13:12,515 | INFO     | update_server=False
[2025-07-27 04:13:43] 2025-07-27 08:13:12,515 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 04:13:43] 2025-07-27 08:13:12,515 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 04:13:43] 2025-07-27 08:13:12,515 | INFO     | aborting loop
[2025-07-27 04:13:43] 2025-07-27 08:13:12,557 | INFO     | all payload control threads have been joined
[2025-07-27 04:13:43] 2025-07-27 08:13:12,914 | INFO     | all data control threads have been joined
[2025-07-27 04:13:43] 2025-07-27 08:13:13,302 | INFO     | all job control threads have been joined
[2025-07-27 04:13:43] 2025-07-27 08:13:13,520 | INFO     | [job] retrieve thread has finished
[2025-07-27 04:13:43] 2025-07-27 08:13:13,520 | INFO     | [job] job monitor thread has finished
[2025-07-27 04:13:43] 2025-07-27 08:13:13,562 | INFO     | [payload] control thread has finished
[2025-07-27 04:13:43] 2025-07-27 08:13:13,630 | INFO     | [payload] failed_post thread has finished
[2025-07-27 04:13:43] 2025-07-27 08:13:13,718 | INFO     | [data] copytool_in thread has finished
[2025-07-27 04:13:43] 2025-07-27 08:13:13,919 | INFO     | [data] control thread has finished
[2025-07-27 04:13:43] 2025-07-27 08:13:14,006 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 04:13:43] 2025-07-27 08:13:14,290 | INFO     | [payload] validate_post thread has finished
[2025-07-27 04:13:43] 2025-07-27 08:13:14,307 | INFO     | [job] control thread has finished
[2025-07-27 04:13:43] 2025-07-27 08:13:14,364 | INFO     | [job] validate thread has finished
[2025-07-27 04:13:43] 2025-07-27 08:13:14,548 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 04:13:43] 2025-07-27 08:13:14,708 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 04:13:43] 2025-07-27 08:13:14,719 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 04:13:43] 2025-07-27 08:13:14,888 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 04:13:43] 2025-07-27 08:13:15,473 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 04:13:43] 2025-07-27 08:13:16,012 | INFO     | [data] copytool_out thread has finished
[2025-07-27 04:13:43] 2025-07-27 08:13:16,477 | INFO     | [job] queue monitor thread has finished
[2025-07-27 04:13:43] 2025-07-27 08:13:18,894 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 04:13:43] 2025-07-27 08:13:22,707 | INFO     | job.realtimelogging is not enabled
[2025-07-27 04:13:43] 2025-07-27 08:13:23,712 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 04:13:43] 2025-07-27 08:13:23,852 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139695278696256)>', '<ExcThread(monitor, started 139694272669440)>']
[2025-07-27 04:13:43] 2025-07-27 08:13:28,870 | INFO     | all workflow threads have been joined
[2025-07-27 04:13:43] 2025-07-27 08:13:28,870 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 04:13:43] 2025-07-27 08:13:28,870 | INFO     | traces error code: 0
[2025-07-27 04:13:43] 2025-07-27 08:13:28,870 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 04:13:43] 2025-07-27 08:13:42,107 | INFO     | 3686s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-07-27 04:13:43] 2025-07-27 08:13:43,522 | INFO     | PID=258686 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 04:13:43] 2025-07-27 08:13:43,522 | INFO     | .. there are 15 such processes running
[2025-07-27 04:13:43] 2025-07-27 08:13:43,522 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 04:13:43] 2025-07-27 08:13:43,522 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 04:13:43] 2025-07-27 08:13:43,522 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 04:13:43] 2025-07-27 08:13:43,522 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 04:13:43] 2025-07-27 08:13:43,522 | INFO     | [monitor] control thread has ended
[2025-07-27 04:13:43] 2025-07-27 08:13:43,599 [wrapper] ==== pilot stdout END ====
[2025-07-27 04:13:43] 2025-07-27 08:13:43,601 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 04:13:43] 2025-07-27 08:13:43,603 [wrapper] pilotpid: 258686
[2025-07-27 04:13:43] 2025-07-27 08:13:43,604 [wrapper] Pilot exit status: 0
[2025-07-27 04:13:43] 2025-07-27 08:13:43,612 [wrapper] pandaids: 6745950272
[2025-07-27 04:13:43] 2025-07-27 08:13:43,690 [wrapper] cleanup supervisor_pilot  593176 258687
[2025-07-27 04:13:43] 2025-07-27 08:13:43,692 [wrapper] Test setup, not cleaning
[2025-07-27 04:13:43] 2025-07-27 08:13:43,694 [wrapper] apfmon messages muted
[2025-07-27 04:13:43] 2025-07-27 08:13:43,696 [wrapper] ==== wrapper stdout END ====
[2025-07-27 04:13:43] 2025-07-27 08:13:43,698 [wrapper] ==== wrapper stderr END ====
[2025-07-27 04:13:43]  *** Error codes and diagnostics ***
[2025-07-27 04:13:43]     "exeErrorCode": 0,
[2025-07-27 04:13:43]     "exeErrorDiag": "",
[2025-07-27 04:13:43]     "pilotErrorCode": 0,
[2025-07-27 04:13:43]     "pilotErrorDiag": "",
[2025-07-27 04:13:43]  *** Listing of results directory ***
[2025-07-27 04:13:43] total 406792
[2025-07-27 04:13:43] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 21:40 pilot3.tar.gz
[2025-07-27 04:13:43] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 22:14 queuedata.json
[2025-07-27 04:13:43] -rwx------. 1 boincer umatlas     36292 Jul 26 22:15 runpilot2-wrapper.sh
[2025-07-27 04:13:43] -rw-r--r--. 1 boincer umatlas       100 Jul 27 03:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 04:13:43] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 03:11 run_atlas
[2025-07-27 04:13:43] -rw-r--r--. 1 boincer umatlas       105 Jul 27 03:11 job.xml
[2025-07-27 04:13:43] -rw-r--r--. 2 boincer umatlas 241550743 Jul 27 03:11 EVNT.45759733._000002.pool.root.1
[2025-07-27 04:13:43] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 03:11 start_atlas.sh
[2025-07-27 04:13:43] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 03:11 shared
[2025-07-27 04:13:43] -rw-r--r--. 2 boincer umatlas    542878 Jul 27 03:11 input.tar.gz
[2025-07-27 04:13:43] -rw-r--r--. 1 boincer umatlas         0 Jul 27 03:11 boinc_lockfile
[2025-07-27 04:13:43] -rw-r--r--. 1 boincer umatlas      2554 Jul 27 03:11 pandaJob.out
[2025-07-27 04:13:43] -rw-------. 1 boincer umatlas    980125 Jul 27 03:11 agis_schedconf.cvmfs.json
[2025-07-27 04:13:43] -rw-------. 1 boincer umatlas   1593052 Jul 27 03:11 agis_ddmendpoints.agis.ALL.json
[2025-07-27 04:13:43] drwx------. 4 boincer umatlas      4096 Jul 27 03:11 pilot3
[2025-07-27 04:13:43] -rw-------. 1 boincer umatlas 169770317 Jul 27 04:12 HITS.45759738._000043.pool.root.1
[2025-07-27 04:13:43] -rw-r--r--. 1 boincer umatlas       529 Jul 27 04:12 boinc_task_state.xml
[2025-07-27 04:13:43] -rw-r--r--. 1 boincer umatlas      7174 Jul 27 04:12 init_data.xml
[2025-07-27 04:13:43] -rw-------. 1 boincer umatlas      1027 Jul 27 04:12 memory_monitor_summary.json
[2025-07-27 04:13:43] -rw-------. 1 boincer umatlas    303149 Jul 27 04:13 log.45759738._000043.job.log.tgz.1
[2025-07-27 04:13:43] -rw-------. 1 boincer umatlas        95 Jul 27 04:13 pilot_heartbeat.json
[2025-07-27 04:13:43] -rw-------. 1 boincer umatlas      7755 Jul 27 04:13 heartbeat.json
[2025-07-27 04:13:43] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 04:13 boinc_mmap_file
[2025-07-27 04:13:43] -rw-r--r--. 1 boincer umatlas        27 Jul 27 04:13 wrapper_checkpoint.txt
[2025-07-27 04:13:43] -rw-------. 1 boincer umatlas       937 Jul 27 04:13 pilotlog.txt
[2025-07-27 04:13:43] -rw-------. 1 boincer umatlas    376354 Jul 27 04:13 log.45759738._000043.job.log.1
[2025-07-27 04:13:43] -rw-------. 1 boincer umatlas       357 Jul 27 04:13 output.list
[2025-07-27 04:13:43] -rw-r--r--. 1 boincer umatlas       620 Jul 27 04:13 runtime_log
[2025-07-27 04:13:43] -rw-------. 1 boincer umatlas    696320 Jul 27 04:13 result.tar.gz
[2025-07-27 04:13:43] -rw-r--r--. 1 boincer umatlas      8660 Jul 27 04:13 runtime_log.err
[2025-07-27 04:13:43] -rw-------. 1 boincer umatlas       652 Jul 27 04:13 DzGODm155z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm2tTLDmRIHoQm.diag
[2025-07-27 04:13:43] -rw-r--r--. 1 boincer umatlas     22582 Jul 27 04:13 stderr.txt
[2025-07-27 04:13:43] HITS file was successfully produced:
[2025-07-27 04:13:43] -rw-------. 1 boincer umatlas 169770317 Jul 27 04:12 shared/HITS.pool.root.1
[2025-07-27 04:13:43]  *** Contents of shared directory: ***
[2025-07-27 04:13:43] total 402920
[2025-07-27 04:13:43] -rw-r--r--. 2 boincer umatlas 241550743 Jul 27 03:11 ATLAS.root_0
[2025-07-27 04:13:43] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 03:11 start_atlas.sh
[2025-07-27 04:13:43] -rw-r--r--. 2 boincer umatlas    542878 Jul 27 03:11 input.tar.gz
[2025-07-27 04:13:43] -rw-------. 1 boincer umatlas 169770317 Jul 27 04:12 HITS.pool.root.1
[2025-07-27 04:13:43] -rw-------. 1 boincer umatlas    696320 Jul 27 04:13 result.tar.gz
04:13:45 (255076): run_atlas exited; CPU time 27587.967240
04:13:45 (255076): called boinc_finish(0)

</stderr_txt>
]]>

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