Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-28 12:10:38 (14896): Detected: vboxwrapper 26206
2025-07-28 12:10:38 (14896): Detected: BOINC client v8.0.2
2025-07-28 12:10:39 (14896): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-07-28 12:10:39 (14896): Successfully copied 'init_data.xml' to the shared directory.
2025-07-28 12:10:40 (14896): Create VM. (boinc_dd206eaf7fac608e, slot#0)
2025-07-28 12:10:41 (14896): Setting Memory Size for VM. (4800MB)
2025-07-28 12:10:41 (14896): Setting CPU Count for VM. (8)
2025-07-28 12:10:41 (14896): Setting Chipset Options for VM.
2025-07-28 12:10:41 (14896): Setting Graphics Controller Options for VM.
2025-07-28 12:10:42 (14896): Setting Boot Options for VM.
2025-07-28 12:10:42 (14896): Setting Network Configuration for NAT.
2025-07-28 12:10:42 (14896): Enabling VM Network Access.
2025-07-28 12:10:42 (14896): Disabling USB Support for VM.
2025-07-28 12:10:43 (14896): Disabling COM Port Support for VM.
2025-07-28 12:10:43 (14896): Disabling LPT Port Support for VM.
2025-07-28 12:10:43 (14896): Disabling Audio Support for VM.
2025-07-28 12:10:43 (14896): Disabling Clipboard Support for VM.
2025-07-28 12:10:44 (14896): Disabling Drag and Drop Support for VM.
2025-07-28 12:10:44 (14896): Adding storage controller(s) to VM.
2025-07-28 12:10:44 (14896): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-28 12:10:47 (14896): Adding VirtualBox Guest Additions to VM.
2025-07-28 12:10:47 (14896): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-28 12:10:48 (14896): forwarding host port 61335 to guest port 80
2025-07-28 12:10:48 (14896): Enabling remote desktop for VM.
2025-07-28 12:10:48 (14896): Required extension pack not installed, remote desktop not enabled.
2025-07-28 12:10:48 (14896): Enabling shared directory for VM.
2025-07-28 12:10:49 (14896): Starting VM using VBoxManage interface. (boinc_dd206eaf7fac608e, slot#0)
2025-07-28 12:10:55 (14896): Successfully started VM. (PID = '640')
2025-07-28 12:10:55 (14896): Reporting VM Process ID to BOINC.
2025-07-28 12:10:55 (14896): Guest Log: BIOS: VirtualBox 7.0.6
2025-07-28 12:10:55 (14896): Guest Log: CPUID EDX: 0x178bfbff
2025-07-28 12:10:55 (14896): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-07-28 12:10:55 (14896): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-28 12:10:55 (14896): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-28 12:10:55 (14896): Detected: Web Application Enabled (http://localhost:61335)
2025-07-28 12:10:55 (14896): Preference change detected
2025-07-28 12:10:55 (14896): Setting CPU throttle for VM. (75%)
2025-07-28 12:10:55 (14896): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-28 12:10:57 (14896): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-28 12:10:57 (14896): Guest Log: BIOS: Booting from Hard Disk...
2025-07-28 12:11:00 (14896): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-28 12:11:00 (14896): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-28 12:11:00 (14896): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-28 12:11:00 (14896): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-28 12:11:00 (14896): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-28 12:11:00 (14896): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-28 12:11:00 (14896): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-28 12:11:00 (14896): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-28 12:11:00 (14896): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-28 12:11:00 (14896): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-28 12:11:00 (14896): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-28 12:11:00 (14896): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-28 12:11:00 (14896): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-28 12:11:00 (14896): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-28 12:11:00 (14896): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-28 12:11:00 (14896): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-28 12:11:00 (14896): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-28 12:11:00 (14896): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-28 12:11:00 (14896): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-28 12:11:00 (14896): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-28 12:11:00 (14896): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-28 12:11:00 (14896): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-28 12:11:00 (14896): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-28 12:11:00 (14896): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-28 12:11:00 (14896): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-28 12:11:00 (14896): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-28 12:11:00 (14896): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-28 12:11:00 (14896): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-28 12:11:00 (14896): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-28 12:11:00 (14896): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-28 12:11:00 (14896): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-28 12:11:00 (14896): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-28 12:11:08 (14896): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-28 12:11:08 (14896): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-28 12:11:17 (14896): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-28 12:11:17 (14896): Guest Log: 00:00:00.000110 main     Log opened 2025-07-28T12:11:14.738268000Z
2025-07-28 12:11:17 (14896): Guest Log: 00:00:00.000196 main     OS Product: Linux
2025-07-28 12:11:17 (14896): Guest Log: 00:00:00.000228 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-28 12:11:17 (14896): Guest Log: 00:00:00.000255 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-28 12:11:17 (14896): Guest Log: 00:00:00.000283 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-28 12:11:17 (14896): Guest Log: 00:00:00.000284 main     Process ID: 1365
2025-07-28 12:11:17 (14896): Guest Log: 00:00:00.000285 main     Package type: LINUX_64BITS_GENERIC
2025-07-28 12:11:17 (14896): Guest Log: 00:00:00.001716 main     5.2.32 r132073 started. Verbose level = 0
2025-07-28 12:11:17 (14896): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-28 12:11:17 (14896): Guest Log: [INFO] Mounting shared directory
2025-07-28 12:11:18 (14896): Guest Log: [INFO] Checking for init_data.xml
2025-07-28 12:11:21 (14896): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-28 12:11:21 (14896): Guest Log: [INFO] Detected branch: prod
2025-07-28 12:11:21 (14896): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-28 12:11:21 (14896): Guest Log: Copying input files
2025-07-28 12:11:22 (14896): Guest Log: Copied input files into RunAtlas.
2025-07-28 12:11:23 (14896): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-07-28 12:11:23 (14896): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-07-28 12:11:23 (14896): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-07-28 12:11:23 (14896): Guest Log: Further information can be found at the LHC@home message board.
2025-07-28 12:11:27 (14896): Guest Log: 00:00:10.005011 timesync vgsvcTimeSyncWorker: Radical guest time change: -10 787 959 408 000ns (GuestNow=1 753 693 886 782 720 000 ns GuestLast=1 753 704 674 742 128 000 ns fSetTimeLastLoop=true )
2025-07-28 12:11:31 (14896): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-28 12:11:31 (14896): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-28 12:11:31 (14896): Guest Log: 2.6.3.0 1641 0 32216 148841 4 1 3117619 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-07-28 12:11:34 (14896): Guest Log: copied the webapp to /var/www
2025-07-28 12:11:34 (14896): Guest Log: ATHENA_PROC_NUMBER=8
2025-07-28 12:11:34 (14896): Guest Log: ATHENA_CORE_NUMBER=8
2025-07-28 12:11:34 (14896): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-28 12:11:34 (14896): Guest Log:  *** Starting ATLAS job. (PandaID=6745950267 taskID=45759738) ***
2025-07-28 13:20:44 (14896): VM state change detected. (old = 'running', new = 'paused')
2025-07-28 13:21:04 (14896): VM state change detected. (old = 'paused', new = 'running')
2025-07-28 13:51:27 (14896): Status Report: Elapsed Time: '6000.000000'
2025-07-28 13:51:27 (14896): Status Report: CPU Time: '7458.562500'
2025-07-28 15:31:38 (14896): Status Report: Elapsed Time: '12000.000000'
2025-07-28 15:31:38 (14896): Status Report: CPU Time: '14623.593750'
2025-07-28 15:46:48 (14896): Guest Log:  *** Job finished ***
2025-07-28 15:46:48 (14896): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-28 15:46:49 (14896): Guest Log: 2025-07-28 12:46:20,990 | INFO     | [payload] failed_post thread has finished
2025-07-28 15:46:49 (14896): Guest Log: 2025-07-28 12:46:21,070 | INFO     | [data] copytool_out thread has finished
2025-07-28 15:46:49 (14896): Guest Log: 2025-07-28 12:46:22,669 | INFO     | [data] queue_monitor thread has finished
2025-07-28 15:46:49 (14896): Guest Log: 2025-07-28 12:46:23,871 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140264186939200)>', '<ExcThread(monitor, started 140263213225728)>']
2025-07-28 15:46:49 (14896): Guest Log: 2025-07-28 12:46:24,664 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-28 15:46:49 (14896): Guest Log: 2025-07-28 12:46:24,665 | INFO     | [monitor] control thread has ended
2025-07-28 15:46:49 (14896): Guest Log: 2025-07-28 12:46:28,877 | INFO     | all workflow threads have been joined
2025-07-28 15:46:49 (14896): Guest Log: 2025-07-28 12:46:28,878 | INFO     | end of generic workflow (traces error code: 0)
2025-07-28 15:46:49 (14896): Guest Log: 2025-07-28 12:46:28,879 | INFO     | traces error code: 0
2025-07-28 15:46:49 (14896): Guest Log: 2025-07-28 12:46:28,880 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-28 15:46:49 (14896): Guest Log: 2025-07-28 12:46:29,103 [wrapper] ==== pilot stdout END ====
2025-07-28 15:46:49 (14896): Guest Log: 2025-07-28 12:46:29,107 [wrapper] ==== wrapper stdout RESUME ====
2025-07-28 15:46:49 (14896): Guest Log: 2025-07-28 12:46:29,110 [wrapper] pilotpid: 5992
2025-07-28 15:46:49 (14896): Guest Log: 2025-07-28 12:46:29,114 [wrapper] Pilot exit status: 0
2025-07-28 15:46:49 (14896): Guest Log: 2025-07-28 12:46:29,178 [wrapper] pandaids: 6745950267
2025-07-28 15:46:49 (14896): Guest Log: 2025-07-28 12:46:29,245 [wrapper] cleanup supervisor_pilot 11714 5993
2025-07-28 15:46:49 (14896): Guest Log: 2025-07-28 12:46:29,250 [wrapper] Test setup, not cleaning
2025-07-28 15:46:49 (14896): Guest Log: 2025-07-28 12:46:29,255 [wrapper] apfmon messages muted
2025-07-28 15:46:49 (14896): Guest Log: 2025-07-28 12:46:29,259 [wrapper] ==== wrapper stdout END ====
2025-07-28 15:46:49 (14896): Guest Log: 2025-07-28 12:46:29,264 [wrapper] ==== wrapper stderr END ====
2025-07-28 15:46:49 (14896): Guest Log:  *** Error codes and diagnostics ***
2025-07-28 15:46:49 (14896): Guest Log:     "exeErrorCode": 0,
2025-07-28 15:46:49 (14896): Guest Log:     "exeErrorDiag": "",
2025-07-28 15:46:49 (14896): Guest Log:     "pilotErrorCode": 0,
2025-07-28 15:46:49 (14896): Guest Log:     "pilotErrorDiag": "",
2025-07-28 15:46:49 (14896): Guest Log:  *** Listing of results directory ***
2025-07-28 15:46:49 (14896): Guest Log: total 176232
2025-07-28 15:46:49 (14896): Guest Log: -rw-r--r--. 1 atlas atlas    530466 Jul 27 01:40 pilot3.tar.gz
2025-07-28 15:46:49 (14896): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Jul 27 02:14 queuedata.json
2025-07-28 15:46:49 (14896): Guest Log: -rwx------. 1 atlas atlas     36292 Jul 27 02:15 runpilot2-wrapper.sh
2025-07-28 15:46:49 (14896): Guest Log: -rwxr-xr-x. 1 atlas atlas      8106 Jul 28 09:11 init_data.xml
2025-07-28 15:46:49 (14896): Guest Log: -rwxr-xr-x. 1 atlas atlas    542878 Jul 28 09:11 input.tar.gz
2025-07-28 15:46:49 (14896): Guest Log: -rwxr-xr-x. 1 atlas atlas     15095 Jul 28 09:11 start_atlas.sh
2025-07-28 15:46:49 (14896): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jul 28 09:11 EVNT.45759733._000002.pool.root.1 -> /data/./ATLAS.root_0
2025-07-28 15:46:49 (14896): Guest Log: -rw-r--r--. 1 atlas atlas      2554 Jul 28 09:11 pandaJob.out
2025-07-28 15:46:49 (14896): Guest Log: -rw-------. 1 atlas atlas    978452 Jul 28 09:12 agis_schedconf.cvmfs.json
2025-07-28 15:46:49 (14896): Guest Log: drwx------. 4 atlas atlas      4096 Jul 28 09:12 pilot3
2025-07-28 15:46:49 (14896): Guest Log: -rw-------. 1 atlas atlas 173829818 Jul 28 12:45 HITS.45759738._000038.pool.root.1
2025-07-28 15:46:49 (14896): Guest Log: -rw-------. 1 atlas atlas        95 Jul 28 12:45 pilot_heartbeat.json
2025-07-28 15:46:49 (14896): Guest Log: -rw-------. 1 atlas atlas      1033 Jul 28 12:45 memory_monitor_summary.json
2025-07-28 15:46:49 (14896): Guest Log: -rw-------. 1 atlas atlas   1593052 Jul 28 12:45 agis_ddmendpoints.agis.ALL.json
2025-07-28 15:46:49 (14896): Guest Log: -rw-------. 1 atlas atlas    373066 Jul 28 12:46 log.45759738._000038.job.log.tgz.1
2025-07-28 15:46:49 (14896): Guest Log: -rw-------. 1 atlas atlas      7816 Jul 28 12:46 heartbeat.json
2025-07-28 15:46:49 (14896): Guest Log: -rw-------. 1 atlas atlas      4540 Jul 28 12:46 pilotlog.txt
2025-07-28 15:46:49 (14896): Guest Log: -rw-------. 1 atlas atlas   1043686 Jul 28 12:46 log.45759738._000038.job.log.1
2025-07-28 15:46:49 (14896): Guest Log: -rw-------. 1 atlas atlas       357 Jul 28 12:46 output.list
2025-07-28 15:46:49 (14896): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jul 28 12:46 runtime_log
2025-07-28 15:46:49 (14896): Guest Log: -rw-------. 1 atlas atlas   1433600 Jul 28 12:46 result.tar.gz
2025-07-28 15:46:49 (14896): Guest Log: -rw-------. 1 atlas atlas       658 Jul 28 12:46 uq7NDm155z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmxtTLDmLChEwn.diag
2025-07-28 15:46:49 (14896): Guest Log: -rw-r--r--. 1 atlas atlas      8597 Jul 28 12:46 runtime_log.err
2025-07-28 15:46:49 (14896): Guest Log: Looking for outputfile HITS.45759738._000038.pool.root.1
2025-07-28 15:46:49 (14896): Guest Log: HITS file was successfully produced
2025-07-28 15:46:49 (14896): Guest Log: -rw-------. 1 atlas atlas 173829818 Jul 28 12:45 /home/atlas/RunAtlas/HITS.45759738._000038.pool.root.1
2025-07-28 15:46:49 (14896): Guest Log: Successfully finished the ATLAS job!
2025-07-28 15:46:49 (14896): Guest Log: Copying the results back to the shared directory!
2025-07-28 15:46:49 (14896): Guest Log:  *** Contents of shared directory: ***
2025-07-28 15:46:50 (14896): Guest Log: total 407604
2025-07-28 15:46:50 (14896): Guest Log: -rwxrwxrwx. 1 root root 241550743 Jul 28 09:10 ATLAS.root_0
2025-07-28 15:46:50 (14896): Guest Log: -rwxrwxrwx. 1 root root 173829818 Jul 28  2025 HITS.pool.root.1
2025-07-28 15:46:50 (14896): Guest Log: -rwxrwxrwx. 1 root root      8106 Jul 28 09:10 init_data.xml
2025-07-28 15:46:50 (14896): Guest Log: -rwxrwxrwx. 1 root root    542878 Jul 27 07:38 input.tar.gz
2025-07-28 15:46:50 (14896): Guest Log: -rwxrwxrwx. 1 root root   1433600 Jul 28  2025 result.tar.gz
2025-07-28 15:46:50 (14896): Guest Log: -rwxrwxrwx. 1 root root     15095 Jul 27 07:38 start_atlas.sh
2025-07-28 15:46:50 (14896): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-28 15:46:50 (14896): VM Completion File Detected.
2025-07-28 15:46:50 (14896): Powering off VM.
2025-07-28 15:46:50 (14896): Successfully stopped VM.
2025-07-28 15:46:50 (14896): Deregistering VM. (boinc_dd206eaf7fac608e, slot#0)
2025-07-28 15:46:50 (14896): Removing network bandwidth throttle group from VM.
2025-07-28 15:46:51 (14896): Removing VM from VirtualBox.
15:46:56 (14896): called boinc_finish(0)

</stderr_txt>
]]>

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