Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-27 09:28:04 (65976): Detected: vboxwrapper 26206
2025-07-27 09:28:04 (65976): Detected: BOINC client v8.2.5
2025-07-27 09:28:04 (65976): Detected: VirtualBox VboxManage Interface (Version: 7.1.8)
2025-07-27 09:28:05 (65976): Successfully copied 'init_data.xml' to the shared directory.
2025-07-27 09:28:06 (65976): Create VM. (boinc_66a312498d30c3f4, slot#27)
2025-07-27 09:28:06 (65976): Setting Memory Size for VM. (4096MB)
2025-07-27 09:28:06 (65976): Setting CPU Count for VM. (1)
2025-07-27 09:28:07 (65976): Setting Chipset Options for VM.
2025-07-27 09:28:07 (65976): Setting Graphics Controller Options for VM.
2025-07-27 09:28:07 (65976): Setting Boot Options for VM.
2025-07-27 09:28:07 (65976): Setting Network Configuration for NAT.
2025-07-27 09:28:08 (65976): Enabling VM Network Access.
2025-07-27 09:28:08 (65976): Disabling USB Support for VM.
2025-07-27 09:28:08 (65976): Disabling COM Port Support for VM.
2025-07-27 09:28:08 (65976): Disabling LPT Port Support for VM.
2025-07-27 09:28:09 (65976): Disabling Audio Support for VM.
2025-07-27 09:28:09 (65976): Disabling Clipboard Support for VM.
2025-07-27 09:28:09 (65976): Disabling Drag and Drop Support for VM.
2025-07-27 09:28:09 (65976): Adding storage controller(s) to VM.
2025-07-27 09:28:10 (65976): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-27 09:28:10 (65976): Adding VirtualBox Guest Additions to VM.
2025-07-27 09:28:10 (65976): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-27 09:28:11 (65976): forwarding host port 58436 to guest port 80
2025-07-27 09:28:11 (65976): Enabling remote desktop for VM.
2025-07-27 09:28:11 (65976): Required extension pack not installed, remote desktop not enabled.
2025-07-27 09:28:11 (65976): Enabling shared directory for VM.
2025-07-27 09:28:12 (65976): Starting VM using VBoxManage interface. (boinc_66a312498d30c3f4, slot#27)
2025-07-27 09:28:16 (65976): Successfully started VM. (PID = '75792')
2025-07-27 09:28:16 (65976): Reporting VM Process ID to BOINC.
2025-07-27 09:28:16 (65976): Guest Log: BIOS: VirtualBox 7.1.8
2025-07-27 09:28:16 (65976): Guest Log: CPUID EDX: 0x178bfbff
2025-07-27 09:28:16 (65976): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-07-27 09:28:16 (65976): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-27 09:28:16 (65976): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-27 09:28:16 (65976): Detected: Web Application Enabled (http://localhost:58436)
2025-07-27 09:28:16 (65976): Preference change detected
2025-07-27 09:28:16 (65976): Setting CPU throttle for VM. (100%)
2025-07-27 09:28:17 (65976): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-27 09:28:18 (65976): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-27 09:28:18 (65976): Guest Log: BIOS: Booting from Hard Disk...
2025-07-27 09:28:20 (65976): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-27 09:28:20 (65976): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-27 09:28:20 (65976): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-27 09:28:20 (65976): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-27 09:28:20 (65976): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-27 09:28:20 (65976): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-27 09:28:20 (65976): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-27 09:28:20 (65976): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-27 09:28:20 (65976): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-27 09:28:20 (65976): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-27 09:28:20 (65976): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-27 09:28:20 (65976): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-27 09:28:20 (65976): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-27 09:28:20 (65976): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-27 09:28:20 (65976): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-27 09:28:20 (65976): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-27 09:28:20 (65976): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-27 09:28:20 (65976): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-27 09:28:20 (65976): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-27 09:28:20 (65976): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-27 09:28:20 (65976): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-27 09:28:20 (65976): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-27 09:28:20 (65976): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-27 09:28:20 (65976): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-27 09:28:20 (65976): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-27 09:28:20 (65976): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-27 09:28:20 (65976): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-27 09:28:20 (65976): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-27 09:28:20 (65976): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-27 09:28:20 (65976): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-27 09:28:20 (65976): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-27 09:28:20 (65976): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-27 09:28:23 (65976): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-27 09:28:23 (65976): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-27 09:28:28 (65976): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-27 09:28:28 (65976): Guest Log: 00:00:00.000120 main     Log opened 2025-07-27T09:28:26.685705000Z
2025-07-27 09:28:28 (65976): Guest Log: 00:00:00.000221 main     OS Product: Linux
2025-07-27 09:28:28 (65976): Guest Log: 00:00:00.000239 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-27 09:28:28 (65976): Guest Log: 00:00:00.000255 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-27 09:28:28 (65976): Guest Log: 00:00:00.000271 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-27 09:28:28 (65976): Guest Log: 00:00:00.000271 main     Process ID: 1244
2025-07-27 09:28:28 (65976): Guest Log: 00:00:00.000272 main     Package type: LINUX_64BITS_GENERIC
2025-07-27 09:28:28 (65976): Guest Log: 00:00:00.001154 main     5.2.32 r132073 started. Verbose level = 0
2025-07-27 09:28:28 (65976): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-27 09:28:28 (65976): Guest Log: [INFO] Mounting shared directory
2025-07-27 09:28:28 (65976): Guest Log: [INFO] Checking for init_data.xml
2025-07-27 09:28:30 (65976): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-27 09:28:30 (65976): Guest Log: [INFO] Detected branch: prod
2025-07-27 09:28:30 (65976): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-27 09:28:30 (65976): Guest Log: Copying input files
2025-07-27 09:28:31 (65976): Guest Log: Copied input files into RunAtlas.
2025-07-27 09:28:31 (65976): Guest Log: Detected user-configured HTTP proxy at http://192.168.1.179:3128 - will set in /etc/cvmfs/default.local
2025-07-27 09:28:37 (65976): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-27 09:28:37 (65976): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-27 09:28:37 (65976): Guest Log: 2.6.3.0 1513 0 31544 148804 4 1 3117619 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.1.179:3128 1
2025-07-27 09:28:38 (65976): Guest Log: copied the webapp to /var/www
2025-07-27 09:28:38 (65976): Guest Log: core_number=1
2025-07-27 09:28:38 (65976): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-27 09:28:38 (65976): Guest Log:  *** Starting ATLAS job. (PandaID=6745950265 taskID=45759738) ***
2025-07-27 09:28:38 (65976): Guest Log: 00:00:10.020202 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 312 665 000ns (GuestNow=1 753 601 318 386 049 000 ns GuestLast=1 753 608 506 698 714 000 ns fSetTimeLastLoop=true )
2025-07-27 11:08:19 (65976): Status Report: Elapsed Time: '6000.000000'
2025-07-27 11:08:19 (65976): Status Report: CPU Time: '5796.250000'
2025-07-27 12:48:22 (65976): Status Report: Elapsed Time: '12000.000000'
2025-07-27 12:48:22 (65976): Status Report: CPU Time: '11771.625000'
2025-07-27 14:28:25 (65976): Status Report: Elapsed Time: '18000.000000'
2025-07-27 14:28:25 (65976): Status Report: CPU Time: '17747.343750'
2025-07-27 16:08:27 (65976): Status Report: Elapsed Time: '24000.000000'
2025-07-27 16:08:27 (65976): Status Report: CPU Time: '23723.687500'
2025-07-27 17:48:30 (65976): Status Report: Elapsed Time: '30000.000000'
2025-07-27 17:48:30 (65976): Status Report: CPU Time: '29697.968750'
2025-07-27 18:48:10 (65976): Guest Log:  *** Job finished ***
2025-07-27 18:48:10 (65976): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-27 18:48:10 (65976): Guest Log: 2025-07-27 16:47:43,819 | INFO     | [data] queue_monitor thread has finished
2025-07-27 18:48:10 (65976): Guest Log: 2025-07-27 16:47:49,469 | INFO     | job.realtimelogging is not enabled
2025-07-27 18:48:10 (65976): Guest Log: 2025-07-27 16:47:50,470 | INFO     | [payload] run_realtimelog thread has finished
2025-07-27 18:48:10 (65976): Guest Log: 2025-07-27 16:47:51,760 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139812713518912)>', '<ExcThread(monitor, started 139812409415424)>']
2025-07-27 18:48:10 (65976): Guest Log: 2025-07-27 16:47:52,048 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-27 18:48:10 (65976): Guest Log: 2025-07-27 16:47:52,048 | INFO     | [monitor] control thread has ended
2025-07-27 18:48:10 (65976): Guest Log: 2025-07-27 16:47:56,765 | INFO     | all workflow threads have been joined
2025-07-27 18:48:10 (65976): Guest Log: 2025-07-27 16:47:56,766 | INFO     | end of generic workflow (traces error code: 0)
2025-07-27 18:48:10 (65976): Guest Log: 2025-07-27 16:47:56,766 | INFO     | traces error code: 0
2025-07-27 18:48:10 (65976): Guest Log: 2025-07-27 16:47:56,766 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-27 18:48:10 (65976): Guest Log: 2025-07-27 16:47:56,834 [wrapper] ==== pilot stdout END ====
2025-07-27 18:48:10 (65976): Guest Log: 2025-07-27 16:47:56,836 [wrapper] ==== wrapper stdout RESUME ====
2025-07-27 18:48:10 (65976): Guest Log: 2025-07-27 16:47:56,838 [wrapper] pilotpid: 5758
2025-07-27 18:48:10 (65976): Guest Log: 2025-07-27 16:47:56,839 [wrapper] Pilot exit status: 0
2025-07-27 18:48:10 (65976): Guest Log: 2025-07-27 16:47:56,880 [wrapper] pandaids: 6745950265
2025-07-27 18:48:10 (65976): Guest Log: 2025-07-27 16:47:56,890 [wrapper] cleanup supervisor_pilot 11387 5759
2025-07-27 18:48:10 (65976): Guest Log: 2025-07-27 16:47:56,891 [wrapper] Test setup, not cleaning
2025-07-27 18:48:10 (65976): Guest Log: 2025-07-27 16:47:56,893 [wrapper] apfmon messages muted
2025-07-27 18:48:10 (65976): Guest Log: 2025-07-27 16:47:56,895 [wrapper] ==== wrapper stdout END ====
2025-07-27 18:48:10 (65976): Guest Log: 2025-07-27 16:47:56,896 [wrapper] ==== wrapper stderr END ====
2025-07-27 18:48:10 (65976): Guest Log:  *** Error codes and diagnostics ***
2025-07-27 18:48:10 (65976): Guest Log:     "exeErrorCode": 0,
2025-07-27 18:48:10 (65976): Guest Log:     "exeErrorDiag": "",
2025-07-27 18:48:10 (65976): Guest Log:     "pilotErrorCode": 0,
2025-07-27 18:48:10 (65976): Guest Log:     "pilotErrorDiag": "",
2025-07-27 18:48:10 (65976): Guest Log:  *** Listing of results directory ***
2025-07-27 18:48:10 (65976): Guest Log: total 178680
2025-07-27 18:48:10 (65976): Guest Log: -rw-r--r--. 1 atlas atlas    530466 Jul 27 01:40 pilot3.tar.gz
2025-07-27 18:48:10 (65976): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Jul 27 02:14 queuedata.json
2025-07-27 18:48:10 (65976): Guest Log: -rwx------. 1 atlas atlas     36292 Jul 27 02:15 runpilot2-wrapper.sh
2025-07-27 18:48:10 (65976): Guest Log: -rwxr-xr-x. 1 atlas atlas      9452 Jul 27 07:28 init_data.xml
2025-07-27 18:48:10 (65976): Guest Log: -rwxr-xr-x. 1 atlas atlas    542880 Jul 27 07:28 input.tar.gz
2025-07-27 18:48:10 (65976): Guest Log: -rwxr-xr-x. 1 atlas atlas     15095 Jul 27 07:28 start_atlas.sh
2025-07-27 18:48:10 (65976): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jul 27 07:28 EVNT.45759733._000002.pool.root.1 -> /data/./ATLAS.root_0
2025-07-27 18:48:10 (65976): Guest Log: -rw-r--r--. 1 atlas atlas      2554 Jul 27 07:28 pandaJob.out
2025-07-27 18:48:10 (65976): Guest Log: -rw-------. 1 atlas atlas    980125 Jul 27 07:28 agis_schedconf.cvmfs.json
2025-07-27 18:48:10 (65976): Guest Log: drwx------. 4 atlas atlas      4096 Jul 27 07:28 pilot3
2025-07-27 18:48:10 (65976): Guest Log: -rw-------. 1 atlas atlas        95 Jul 27 16:46 pilot_heartbeat.json
2025-07-27 18:48:10 (65976): Guest Log: -rw-------. 1 atlas atlas 172314391 Jul 27 16:47 HITS.45759738._000036.pool.root.1
2025-07-27 18:48:10 (65976): Guest Log: -rw-------. 1 atlas atlas      1022 Jul 27 16:47 memory_monitor_summary.json
2025-07-27 18:48:10 (65976): Guest Log: -rw-------. 1 atlas atlas   1593052 Jul 27 16:47 agis_ddmendpoints.agis.ALL.json
2025-07-27 18:48:10 (65976): Guest Log: -rw-------. 1 atlas atlas    459149 Jul 27 16:47 log.45759738._000036.job.log.tgz.1
2025-07-27 18:48:10 (65976): Guest Log: -rw-------. 1 atlas atlas      7761 Jul 27 16:47 heartbeat.json
2025-07-27 18:48:10 (65976): Guest Log: -rw-------. 1 atlas atlas      4798 Jul 27 16:47 pilotlog.txt
2025-07-27 18:48:10 (65976): Guest Log: -rw-------. 1 atlas atlas   2964166 Jul 27 16:47 log.45759738._000036.job.log.1
2025-07-27 18:48:10 (65976): Guest Log: -rw-------. 1 atlas atlas       357 Jul 27 16:47 output.list
2025-07-27 18:48:10 (65976): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jul 27 16:47 runtime_log
2025-07-27 18:48:10 (65976): Guest Log: -rw-------. 1 atlas atlas   3440640 Jul 27 16:47 result.tar.gz
2025-07-27 18:48:10 (65976): Guest Log: -rw-r--r--. 1 atlas atlas      8466 Jul 27 16:47 runtime_log.err
2025-07-27 18:48:10 (65976): Guest Log: -rw-------. 1 atlas atlas       658 Jul 27 16:47 L34NDm155z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmvtTLDm6Oc4Gn.diag
2025-07-27 18:48:10 (65976): Guest Log: Looking for outputfile HITS.45759738._000036.pool.root.1
2025-07-27 18:48:10 (65976): Guest Log: HITS file was successfully produced
2025-07-27 18:48:10 (65976): Guest Log: -rw-------. 1 atlas atlas 172314391 Jul 27 16:47 /home/atlas/RunAtlas/HITS.45759738._000036.pool.root.1
2025-07-27 18:48:11 (65976): Guest Log: Successfully finished the ATLAS job!
2025-07-27 18:48:11 (65976): Guest Log: Copying the results back to the shared directory!
2025-07-27 18:48:11 (65976): Guest Log:  *** Contents of shared directory: ***
2025-07-27 18:48:11 (65976): Guest Log: total 408088
2025-07-27 18:48:11 (65976): Guest Log: -rwxrwxrwx. 1 root root 241550743 Jul 27 07:28 ATLAS.root_0
2025-07-27 18:48:11 (65976): Guest Log: -rwxrwxrwx. 1 root root 172314391 Jul 27  2025 HITS.pool.root.1
2025-07-27 18:48:11 (65976): Guest Log: -rwxrwxrwx. 1 root root      9452 Jul 27 07:28 init_data.xml
2025-07-27 18:48:11 (65976): Guest Log: -rwxrwxrwx. 1 root root    542880 Jul 27 07:27 input.tar.gz
2025-07-27 18:48:11 (65976): Guest Log: -rwxrwxrwx. 1 root root   3440640 Jul 27  2025 result.tar.gz
2025-07-27 18:48:11 (65976): Guest Log: -rwxrwxrwx. 1 root root     15095 Jul 27 07:27 start_atlas.sh
2025-07-27 18:48:11 (65976): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-27 18:48:11 (65976): VM Completion File Detected.
2025-07-27 18:48:11 (65976): Powering off VM.
2025-07-27 18:48:11 (65976): Successfully stopped VM.
2025-07-27 18:48:11 (65976): Deregistering VM. (boinc_66a312498d30c3f4, slot#27)
2025-07-27 18:48:11 (65976): Removing network bandwidth throttle group from VM.
2025-07-27 18:48:11 (65976): Removing VM from VirtualBox.
18:48:17 (65976): called boinc_finish(0)

</stderr_txt>
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