Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
03:00:08 (531078): wrapper (7.7.26015): starting
03:00:08 (531078): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 03:00:08] Arguments: --nthreads 8
[2025-07-27 03:00:08] Threads: 8
[2025-07-27 03:00:08] Checking for CVMFS
[2025-07-27 03:00:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 03:00:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 03:00:10] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 03:00:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 03:00:12] 2.12.6.0 3074763 99524 710724 148803 3 184 32438715 32935936 26708 16776704 2 194743708 99.662 225369991 6976 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 03:00:12] CVMFS is ok
[2025-07-27 03:00:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 03:00:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 03:00:12] Further information can be found at the LHC@home message board.
[2025-07-27 03:00:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 03:00:12] Checking for apptainer binary...
[2025-07-27 03:00:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 03:00:12] Running /usr/bin/apptainer --version
[2025-07-27 03:00:13] apptainer version 1.4.1-1.el9
[2025-07-27 03:00:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 03:00:14] c6-12-25-1.aglt2.org
[2025-07-27 03:00:14] apptainer works
[2025-07-27 03:00:14] Set ATHENA_PROC_NUMBER=8
[2025-07-27 03:00:14] Set ATHENA_CORE_NUMBER=8
[2025-07-27 03:00:14] Starting ATLAS job with PandaID=6746024548
[2025-07-27 03:00:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
07:30:53 (1151294): wrapper (7.7.26015): starting
07:30:53 (1151294): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 07:30:53] Arguments: --nthreads 8
[2025-07-27 07:30:53] Threads: 8
[2025-07-27 07:30:53] This job has been restarted, cleaning up previous attempt
[2025-07-27 07:30:53] Checking for CVMFS
[2025-07-27 07:30:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 07:30:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 07:30:55] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 07:30:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 07:30:57] 2.12.6.0 3074763 99795 719356 148811 1 335 32545496 32935936 25544 16776704 2 195059785 99.662 225382990 6975 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 07:30:57] CVMFS is ok
[2025-07-27 07:30:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 07:30:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 07:30:57] Further information can be found at the LHC@home message board.
[2025-07-27 07:30:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 07:30:57] Checking for apptainer binary...
[2025-07-27 07:30:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 07:30:57] Running /usr/bin/apptainer --version
[2025-07-27 07:30:58] apptainer version 1.4.1-1.el9
[2025-07-27 07:30:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 07:30:59] c6-12-25-1.aglt2.org
[2025-07-27 07:30:59] apptainer works
[2025-07-27 07:30:59] Set ATHENA_PROC_NUMBER=8
[2025-07-27 07:30:59] Set ATHENA_CORE_NUMBER=8
[2025-07-27 07:30:59] Starting ATLAS job with PandaID=6746024548
[2025-07-27 07:30:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 00:27:06]  *** The last 200 lines of the pilot log: ***
[2025-07-28 00:27:06] 2025-07-28 04:26:24,254 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 00:27:06] 2025-07-28 04:26:25,526 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-28 00:27:06] 2025-07-28 04:26:25,823 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 999.9995624999996
[2025-07-28 00:27:06] 2025-07-28 04:26:26,120 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6746024548/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 00:27:06] 2025-07-28 04:26:26,122 | INFO     | extracted standard info from prmon json
[2025-07-28 00:27:06] 2025-07-28 04:26:26,141 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 00:27:06] 2025-07-28 04:26:26,142 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 00:27:06] 2025-07-28 04:26:26,155 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 00:27:06] 2025-07-28 04:26:26,156 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 00:27:06] 2025-07-28 04:26:26,389 | INFO     | fitting pss+swap vs Time
[2025-07-28 00:27:06] 2025-07-28 04:26:26,397 | INFO     | sum of square deviations: 303618924351.027
[2025-07-28 00:27:06] 2025-07-28 04:26:26,515 | INFO     | sum of deviations: 809146992148.3497
[2025-07-28 00:27:06] 2025-07-28 04:26:26,517 | INFO     | mean x: 1753646428.1903324
[2025-07-28 00:27:06] 2025-07-28 04:26:26,517 | INFO     | mean y: 2030118.4531722055
[2025-07-28 00:27:06] 2025-07-28 04:26:26,517 | INFO     | -- intersect: -4671452391.554624
[2025-07-28 00:27:06] 2025-07-28 04:26:26,517 | INFO     | intersect: -4671452391.554624
[2025-07-28 00:27:06] 2025-07-28 04:26:26,524 | INFO     | chi2: 6.368328506016299
[2025-07-28 00:27:06] 2025-07-28 04:26:26,532 | INFO     | sum of square deviations: 299055678558.8422
[2025-07-28 00:27:06] 2025-07-28 04:26:26,642 | INFO     | sum of deviations: 909237427402.9503
[2025-07-28 00:27:06] 2025-07-28 04:26:26,647 | INFO     | mean x: 1753646275.6912956
[2025-07-28 00:27:06] 2025-07-28 04:26:26,647 | INFO     | mean y: 2033453.7965587045
[2025-07-28 00:27:06] 2025-07-28 04:26:26,648 | INFO     | -- intersect: -5329685495.55818
[2025-07-28 00:27:06] 2025-07-28 04:26:26,648 | INFO     | intersect: -5329685495.55818
[2025-07-28 00:27:06] 2025-07-28 04:26:26,655 | INFO     | chi2: 5.038889067031844
[2025-07-28 00:27:06] 2025-07-28 04:26:26,655 | INFO     | current chi2=5.038889067031844 (change=20.87579869236495 %)
[2025-07-28 00:27:06] 2025-07-28 04:26:26,656 | INFO     | right removable region: 987
[2025-07-28 00:27:06] 2025-07-28 04:26:26,663 | INFO     | sum of square deviations: 299055259668.907
[2025-07-28 00:27:06] 2025-07-28 04:26:26,768 | INFO     | sum of deviations: 583095472393.6194
[2025-07-28 00:27:06] 2025-07-28 04:26:26,769 | INFO     | mean x: 1753646580.6963563
[2025-07-28 00:27:06] 2025-07-28 04:26:26,769 | INFO     | mean y: 2037667.9220647772
[2025-07-28 00:27:06] 2025-07-28 04:26:26,769 | INFO     | -- intersect: -3417207934.093715
[2025-07-28 00:27:06] 2025-07-28 04:26:26,769 | INFO     | intersect: -3417207934.093715
[2025-07-28 00:27:06] 2025-07-28 04:26:26,777 | INFO     | chi2: 3.5370859650643762
[2025-07-28 00:27:06] 2025-07-28 04:26:26,778 | INFO     | current chi2=3.5370859650643762 (change=44.45817357375936 %)
[2025-07-28 00:27:06] 2025-07-28 04:26:26,785 | INFO     | sum of square deviations: 294537669631.51984
[2025-07-28 00:27:06] 2025-07-28 04:26:26,847 | INFO     | monitor loop #2379: job 0:6746024548 is in state 'finished'
[2025-07-28 00:27:06] 2025-07-28 04:26:26,847 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 00:27:06] 2025-07-28 04:26:26,899 | INFO     | sum of deviations: 473725213698.9238
[2025-07-28 00:27:06] 2025-07-28 04:26:26,904 | INFO     | mean x: 1753646733.200407
[2025-07-28 00:27:06] 2025-07-28 04:26:26,904 | INFO     | mean y: 2041359.6907426247
[2025-07-28 00:27:06] 2025-07-28 04:26:26,905 | INFO     | -- intersect: -2818469424.1322055
[2025-07-28 00:27:06] 2025-07-28 04:26:26,905 | INFO     | intersect: -2818469424.1322055
[2025-07-28 00:27:06] 2025-07-28 04:26:26,912 | INFO     | chi2: 2.953669126182323
[2025-07-28 00:27:06] 2025-07-28 04:26:26,913 | INFO     | current chi2=2.953669126182323 (change=16.494279320447188 %)
[2025-07-28 00:27:06] 2025-07-28 04:26:26,913 | INFO     | left removable region: 20
[2025-07-28 00:27:06] 2025-07-28 04:26:26,921 | INFO     | sum of square deviations: 280388505634.668
[2025-07-28 00:27:06] 2025-07-28 04:26:27,026 | INFO     | sum of deviations: 441823286006.1899
[2025-07-28 00:27:06] 2025-07-28 04:26:27,027 | INFO     | mean x: 1753646855.196484
[2025-07-28 00:27:06] 2025-07-28 04:26:27,028 | INFO     | mean y: 2049502.4674250258
[2025-07-28 00:27:06] 2025-07-28 04:26:27,028 | INFO     | -- intersect: -2761266398.459196
[2025-07-28 00:27:06] 2025-07-28 04:26:27,033 | INFO     | intersect: -2761266398.459196
[2025-07-28 00:27:06] 2025-07-28 04:26:27,041 | INFO     | chi2: 1.141062125319011
[2025-07-28 00:27:06] 2025-07-28 04:26:27,042 | INFO     | -- intersect: -2761266398.459196
[2025-07-28 00:27:06] 2025-07-28 04:26:27,042 | INFO     | current memory leak: 1.58 B/s (using 967 data points, chi2=1.14)
[2025-07-28 00:27:06] 2025-07-28 04:26:27,045 | INFO     | could have reported an average CPU frequency of 999 MHz (36 samples)
[2025-07-28 00:27:06] 2025-07-28 04:26:27,046 | INFO     | ..............................
[2025-07-28 00:27:06] 2025-07-28 04:26:27,046 | INFO     | . Timing measurements:
[2025-07-28 00:27:06] 2025-07-28 04:26:27,047 | INFO     | . get job = 0 s
[2025-07-28 00:27:06] 2025-07-28 04:26:27,047 | INFO     | . initial setup = 6 s
[2025-07-28 00:27:06] 2025-07-28 04:26:27,047 | INFO     | . payload setup = 72 s
[2025-07-28 00:27:06] 2025-07-28 04:26:27,047 | INFO     | . stage-in = 0 s
[2025-07-28 00:27:06] 2025-07-28 04:26:27,047 | INFO     | . payload execution = 60593 s
[2025-07-28 00:27:06] 2025-07-28 04:26:27,047 | INFO     | . stage-out = 12 s
[2025-07-28 00:27:06] 2025-07-28 04:26:27,048 | INFO     | . log creation = 1 s
[2025-07-28 00:27:06] 2025-07-28 04:26:27,048 | INFO     | ..............................
[2025-07-28 00:27:06] 2025-07-28 04:26:27,863 | INFO     | 
[2025-07-28 00:27:06] 2025-07-28 04:26:27,863 | INFO     | job summary report
[2025-07-28 00:27:06] 2025-07-28 04:26:27,864 | INFO     | --------------------------------------------------
[2025-07-28 00:27:06] 2025-07-28 04:26:27,864 | INFO     | PanDA job id: 6746024548
[2025-07-28 00:27:06] 2025-07-28 04:26:27,864 | INFO     | task id: 45758492
[2025-07-28 00:27:06] 2025-07-28 04:26:27,864 | INFO     | errors: (none)
[2025-07-28 00:27:06] 2025-07-28 04:26:27,865 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 00:27:06] 2025-07-28 04:26:27,865 | INFO     | pilot state: finished 
[2025-07-28 00:27:06] 2025-07-28 04:26:27,865 | INFO     | transexitcode: 0
[2025-07-28 00:27:06] 2025-07-28 04:26:27,865 | INFO     | exeerrorcode: 0
[2025-07-28 00:27:06] 2025-07-28 04:26:27,865 | INFO     | exeerrordiag: 
[2025-07-28 00:27:06] 2025-07-28 04:26:27,866 | INFO     | exitcode: 0
[2025-07-28 00:27:06] 2025-07-28 04:26:27,866 | INFO     | exitmsg: OK
[2025-07-28 00:27:06] 2025-07-28 04:26:27,871 | INFO     | cpuconsumptiontime: 210880 s
[2025-07-28 00:27:06] 2025-07-28 04:26:27,872 | INFO     | nevents: 400
[2025-07-28 00:27:06] 2025-07-28 04:26:27,872 | INFO     | neventsw: 0
[2025-07-28 00:27:06] 2025-07-28 04:26:27,872 | INFO     | pid: 1187059
[2025-07-28 00:27:06] 2025-07-28 04:26:27,873 | INFO     | pgrp: 1187059
[2025-07-28 00:27:06] 2025-07-28 04:26:27,873 | INFO     | corecount: 8
[2025-07-28 00:27:06] 2025-07-28 04:26:27,873 | INFO     | event service: False
[2025-07-28 00:27:06] 2025-07-28 04:26:27,873 | INFO     | sizes: {0: 2396636, 1: 2397321, 3: 2397349, 4: 2397349, 5: 2397520, 6: 2397576, 18: 2397732, 29: 2397760, 40: 2397788, 46: 2398078, 51: 2398106, 60676: 2447214, 60
[2025-07-28 00:27:06] 2025-07-28 04:26:27,873 | INFO     | --------------------------------------------------
[2025-07-28 00:27:06] 2025-07-28 04:26:27,874 | INFO     | 
[2025-07-28 00:27:06] 2025-07-28 04:26:27,874 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-07-28 00:27:06] 2025-07-28 04:26:28,177 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 00:27:06] 2025-07-28 04:26:28,178 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 00:27:06] 2025-07-28 04:26:28,178 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 00:27:06] 2025-07-28 04:26:28,178 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 00:27:06] 2025-07-28 04:26:28,198 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 00:27:06] 2025-07-28 04:26:28,198 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 00:27:06] 2025-07-28 04:26:28,199 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 00:27:06] 2025-07-28 04:26:28,199 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 00:27:06] 2025-07-28 04:26:28,199 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 00:27:06] 2025-07-28 04:26:28,199 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 00:27:06] 2025-07-28 04:26:28,200 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 00:27:06] 2025-07-28 04:26:28,200 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 00:27:06] 2025-07-28 04:26:28,200 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 00:27:06] 2025-07-28 04:26:28,200 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 00:27:06] 2025-07-28 04:26:28,201 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 00:27:06] 2025-07-28 04:26:28,201 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 00:27:06] 2025-07-28 04:26:28,250 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 00:27:06] 2025-07-28 04:26:28,250 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 00:27:06] 2025-07-28 04:26:28,251 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 00:27:06] 2025-07-28 04:26:28,251 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 00:27:06] 2025-07-28 04:26:28,251 | INFO     | job 6746024548 has completed (purged errors)
[2025-07-28 00:27:06] 2025-07-28 04:26:28,252 | INFO     | overall cleanup function is called
[2025-07-28 00:27:06] 2025-07-28 04:26:29,274 | INFO     | --- collectZombieJob: --- 10, [1187059]
[2025-07-28 00:27:06] 2025-07-28 04:26:29,277 | INFO     | zombie collector waiting for pid 1187059
[2025-07-28 00:27:06] 2025-07-28 04:26:29,277 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 00:27:06] 2025-07-28 04:26:29,278 | INFO     | collected zombie processes
[2025-07-28 00:27:06] 2025-07-28 04:26:29,278 | INFO     | will attempt to kill all subprocesses of pid=1187059
[2025-07-28 00:27:06] 2025-07-28 04:26:35,920 | INFO     | process IDs to be killed: [1187059] (in reverse order)
[2025-07-28 00:27:06] 2025-07-28 04:26:36,892 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 00:27:06] 2025-07-28 04:26:36,893 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 00:27:06] 2025-07-28 04:26:36,977 | INFO     | did not find any defunct processes belonging to 1187059
[2025-07-28 00:27:06] 2025-07-28 04:26:37,178 | INFO     | did not find any defunct processes belonging to 1187059
[2025-07-28 00:27:06] 2025-07-28 04:26:37,178 | INFO     | ready for new job
[2025-07-28 00:27:06] 2025-07-28 04:26:37,179 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 00:27:06] 2025-07-28 04:26:37,206 | INFO     | ***************************************
[2025-07-28 00:27:06] 2025-07-28 04:26:37,216 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 00:27:06] 2025-07-28 04:26:37,217 | INFO     | ***************************************
[2025-07-28 00:27:06] 2025-07-28 04:26:37,217 | INFO     | 
[2025-07-28 00:27:06] 2025-07-28 04:26:37,282 | INFO     | architecture information:
[2025-07-28 00:27:06] 2025-07-28 04:26:37,301 | INFO     | executing command: cat /etc/os-release
[2025-07-28 00:27:06] 2025-07-28 04:26:37,521 | INFO     | cat /etc/os-release:
[2025-07-28 00:27:06] NAME="CentOS Linux"
[2025-07-28 00:27:06] VERSION="7 (Core)"
[2025-07-28 00:27:06] ID="centos"
[2025-07-28 00:27:06] ID_LIKE="rhel fedora"
[2025-07-28 00:27:06] VERSION_ID="7"
[2025-07-28 00:27:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 00:27:06] ANSI_COLOR="0;31"
[2025-07-28 00:27:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 00:27:06] HOME_URL="https://www.centos.org/"
[2025-07-28 00:27:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 00:27:06] 
[2025-07-28 00:27:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 00:27:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 00:27:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 00:27:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 00:27:06] 
[2025-07-28 00:27:06] 2025-07-28 04:26:37,522 | INFO     | ***************************************
[2025-07-28 00:27:06] 2025-07-28 04:26:38,026 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-07-28 00:27:06] 2025-07-28 04:26:38,241 | INFO     | sufficient remaining disk space (75590795264 B)
[2025-07-28 00:27:06] 2025-07-28 04:26:38,242 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 00:27:06] 2025-07-28 04:26:38,242 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 00:27:06] 2025-07-28 04:26:38,242 | INFO     | update_server=False
[2025-07-28 00:27:06] 2025-07-28 04:26:38,243 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 00:27:06] 2025-07-28 04:26:38,243 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 00:27:06] 2025-07-28 04:26:38,256 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 00:27:06] 2025-07-28 04:26:38,257 | INFO     | aborting loop
[2025-07-28 00:27:06] 2025-07-28 04:26:38,385 | INFO     | all data control threads have been joined
[2025-07-28 00:27:06] 2025-07-28 04:26:38,587 | INFO     | all payload control threads have been joined
[2025-07-28 00:27:06] 2025-07-28 04:26:38,607 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 00:27:06] 2025-07-28 04:26:39,249 | INFO     | [job] retrieve thread has finished
[2025-07-28 00:27:06] 2025-07-28 04:26:39,264 | INFO     | [job] job monitor thread has finished
[2025-07-28 00:27:06] 2025-07-28 04:26:39,392 | INFO     | [data] control thread has finished
[2025-07-28 00:27:06] 2025-07-28 04:26:39,593 | INFO     | [payload] control thread has finished
[2025-07-28 00:27:06] 2025-07-28 04:26:39,636 | INFO     | all job control threads have been joined
[2025-07-28 00:27:06] 2025-07-28 04:26:39,658 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 00:27:06] 2025-07-28 04:26:39,666 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 00:27:06] 2025-07-28 04:26:39,874 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 00:27:06] 2025-07-28 04:26:39,909 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 00:27:06] 2025-07-28 04:26:39,982 | INFO     | [payload] validate_post thread has finished
[2025-07-28 00:27:06] 2025-07-28 04:26:39,992 | INFO     | [payload] failed_post thread has finished
[2025-07-28 00:27:06] 2025-07-28 04:26:40,161 | INFO     | [job] validate thread has finished
[2025-07-28 00:27:06] 2025-07-28 04:26:40,176 | INFO     | [data] copytool_in thread has finished
[2025-07-28 00:27:06] 2025-07-28 04:26:40,252 | INFO     | [data] copytool_out thread has finished
[2025-07-28 00:27:06] 2025-07-28 04:26:40,642 | INFO     | [job] control thread has finished
[2025-07-28 00:27:06] 2025-07-28 04:26:41,118 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 00:27:06] 2025-07-28 04:26:42,125 | INFO     | [job] queue monitor thread has finished
[2025-07-28 00:27:06] 2025-07-28 04:26:42,617 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 00:27:06] 2025-07-28 04:26:43,926 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140134719268672)>', '<ExcThread(monitor, started 140133567293184)>']
[2025-07-28 00:27:06] 2025-07-28 04:26:48,952 | INFO     | all workflow threads have been joined
[2025-07-28 00:27:06] 2025-07-28 04:26:48,953 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 00:27:06] 2025-07-28 04:26:48,954 | INFO     | traces error code: 0
[2025-07-28 00:27:06] 2025-07-28 04:26:48,955 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 00:27:06] 2025-07-28 04:27:03,828 | INFO     | PID=1163856 has CPU usage=9.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 00:27:06] 2025-07-28 04:27:03,844 | INFO     | .. there are 22 such processes running
[2025-07-28 00:27:06] 2025-07-28 04:27:03,847 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 00:27:06] 2025-07-28 04:27:03,848 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 00:27:06] 2025-07-28 04:27:03,848 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 00:27:06] 2025-07-28 04:27:03,849 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 00:27:06] 2025-07-28 04:27:03,849 | CRITICAL | thread 'MainThread' is not alive
[2025-07-28 00:27:06] 2025-07-28 04:27:03,850 | INFO     | [monitor] control thread has ended
[2025-07-28 00:27:06] 2025-07-28 04:27:04,647 [wrapper] ==== pilot stdout END ====
[2025-07-28 00:27:06] 2025-07-28 04:27:04,708 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 00:27:06] 2025-07-28 04:27:04,776 [wrapper] pilotpid: 1163856
[2025-07-28 00:27:06] 2025-07-28 04:27:04,820 [wrapper] Pilot exit status: 0
[2025-07-28 00:27:06] 2025-07-28 04:27:05,014 [wrapper] pandaids: 6746024548 6746024548
[2025-07-28 00:27:06] 2025-07-28 04:27:05,398 [wrapper] cleanup supervisor_pilot 4161351 1163857
[2025-07-28 00:27:06] 2025-07-28 04:27:05,419 [wrapper] Test setup, not cleaning
[2025-07-28 00:27:06] 2025-07-28 04:27:05,452 [wrapper] apfmon messages muted
[2025-07-28 00:27:06] 2025-07-28 04:27:05,468 [wrapper] ==== wrapper stdout END ====
[2025-07-28 00:27:06] 2025-07-28 04:27:05,511 [wrapper] ==== wrapper stderr END ====
[2025-07-28 00:27:06]  *** Error codes and diagnostics ***
[2025-07-28 00:27:06]     "exeErrorCode": 0,
[2025-07-28 00:27:06]     "exeErrorDiag": "",
[2025-07-28 00:27:06]     "pilotErrorCode": 0,
[2025-07-28 00:27:06]     "pilotErrorDiag": "",
[2025-07-28 00:27:06]  *** Listing of results directory ***
[2025-07-28 00:27:06] total 561772
[2025-07-28 00:27:06] drwx------. 4 boincer umatlas      4096 Jun 17 06:04 pilot3
[2025-07-28 00:27:06] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 00:45 pilot3.tar.gz
[2025-07-28 00:27:06] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 00:47 queuedata.json
[2025-07-28 00:27:06] -rwx------. 1 boincer umatlas     36292 Jul 27 00:47 runpilot2-wrapper.sh
[2025-07-28 00:27:06] -rw-r--r--. 1 boincer umatlas       100 Jul 27 03:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 00:27:06] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 03:00 run_atlas
[2025-07-28 00:27:06] -rw-r--r--. 1 boincer umatlas       105 Jul 27 03:00 job.xml
[2025-07-28 00:27:06] -rw-r--r--. 3 boincer umatlas 203363675 Jul 27 03:00 EVNT.45758490._000005.pool.root.1
[2025-07-28 00:27:06] -rw-r--r--. 3 boincer umatlas 203363675 Jul 27 03:00 ATLAS.root_0
[2025-07-28 00:27:06] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 03:00 shared
[2025-07-28 00:27:06] -rw-r--r--. 2 boincer umatlas    542872 Jul 27 03:00 input.tar.gz
[2025-07-28 00:27:06] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 03:00 start_atlas.sh
[2025-07-28 00:27:06] -rw-r--r--. 1 boincer umatlas         0 Jul 27 03:00 boinc_lockfile
[2025-07-28 00:27:06] -rw-r--r--. 1 boincer umatlas      2553 Jul 27 07:30 pandaJob.out
[2025-07-28 00:27:06] -rw-------. 1 boincer umatlas    980109 Jul 27 07:32 agis_schedconf.cvmfs.json
[2025-07-28 00:27:06] -rw-r--r--. 1 boincer umatlas      6859 Jul 28 00:22 init_data.xml
[2025-07-28 00:27:06] -rw-------. 1 boincer umatlas 155992962 Jul 28 00:22 HITS.45758492._000118.pool.root.1
[2025-07-28 00:27:06] -rw-r--r--. 1 boincer umatlas       532 Jul 28 00:22 boinc_task_state.xml
[2025-07-28 00:27:06] -rw-------. 1 boincer umatlas      1055 Jul 28 00:25 memory_monitor_summary.json
[2025-07-28 00:27:06] -rw-------. 1 boincer umatlas   1593052 Jul 28 00:25 agis_ddmendpoints.agis.ALL.json
[2025-07-28 00:27:06] -rw-------. 1 boincer umatlas    722208 Jul 28 00:25 log.45758492._000118.job.log.tgz.1
[2025-07-28 00:27:06] -rw-------. 1 boincer umatlas      7829 Jul 28 00:26 heartbeat.json
[2025-07-28 00:27:06] -rw-r--r--. 1 boincer umatlas      8192 Jul 28 00:27 boinc_mmap_file
[2025-07-28 00:27:06] -rw-r--r--. 1 boincer umatlas        29 Jul 28 00:27 wrapper_checkpoint.txt
[2025-07-28 00:27:06] -rw-------. 1 boincer umatlas        96 Jul 28 00:27 pilot_heartbeat.json
[2025-07-28 00:27:06] -rw-------. 1 boincer umatlas       893 Jul 28 00:27 pilotlog.txt
[2025-07-28 00:27:06] -rw-------. 1 boincer umatlas   3601246 Jul 28 00:27 log.45758492._000118.job.log.1
[2025-07-28 00:27:06] -rw-------. 1 boincer umatlas       357 Jul 28 00:27 output.list
[2025-07-28 00:27:06] -rw-r--r--. 1 boincer umatlas       620 Jul 28 00:27 runtime_log
[2025-07-28 00:27:06] -rw-------. 1 boincer umatlas   4341760 Jul 28 00:27 result.tar.gz
[2025-07-28 00:27:06] -rw-r--r--. 1 boincer umatlas      8756 Jul 28 00:27 runtime_log.err
[2025-07-28 00:27:06] -rw-------. 1 boincer umatlas       787 Jul 28 00:27 6KqMDmBT8z7n9Rq4apOajLDm4fhM0noT9bVof3QYDm8x1KDmZQqfsm.diag
[2025-07-28 00:27:06] -rw-r--r--. 1 boincer umatlas     23416 Jul 28 00:27 stderr.txt
[2025-07-28 00:27:06] HITS file was successfully produced:
[2025-07-28 00:27:07] -rw-------. 1 boincer umatlas 155992962 Jul 28 00:22 shared/HITS.pool.root.1
[2025-07-28 00:27:07]  *** Contents of shared directory: ***
[2025-07-28 00:27:07] total 355736
[2025-07-28 00:27:07] -rw-r--r--. 3 boincer umatlas 203363675 Jul 27 03:00 ATLAS.root_0
[2025-07-28 00:27:07] -rw-r--r--. 2 boincer umatlas    542872 Jul 27 03:00 input.tar.gz
[2025-07-28 00:27:07] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 03:00 start_atlas.sh
[2025-07-28 00:27:07] -rw-------. 1 boincer umatlas 155992962 Jul 28 00:22 HITS.pool.root.1
[2025-07-28 00:27:07] -rw-------. 1 boincer umatlas   4341760 Jul 28 00:27 result.tar.gz
00:27:09 (1151294): run_atlas exited; CPU time 216633.432087
00:27:09 (1151294): called boinc_finish(0)

</stderr_txt>
]]>

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